Wall clock time and date at job start Tue Mar 31 2020 22:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00470 * 2 1 4 4 C 1.52999 * 109.47725 * 184.79504 * 3 2 1 5 5 C 1.52996 * 109.47162 * 184.85121 * 4 3 2 6 6 C 1.50694 * 110.43495 * 300.07736 * 5 4 3 7 7 O 1.21287 * 119.99796 * 121.43451 * 6 5 4 8 8 N 1.34775 * 120.00506 * 301.15875 * 6 5 4 9 9 C 1.46927 * 120.62875 * 355.43277 * 8 6 5 10 10 C 1.52761 * 109.00726 * 233.58178 * 9 8 6 11 11 C 1.53032 * 109.38392 * 305.58693 * 10 9 8 12 12 C 1.53040 * 109.54069 * 61.23980 * 11 10 9 13 13 H 1.08999 * 109.49529 * 58.58669 * 12 11 10 14 14 N 1.46502 * 109.50111 * 178.68365 * 12 11 10 15 15 C 1.46503 * 119.99468 * 59.83581 * 14 12 11 16 16 C 1.36933 * 119.99844 * 239.84209 * 14 12 11 17 17 H 1.07998 * 120.00259 * 320.13531 * 16 14 12 18 18 C 1.38814 * 119.99940 * 140.14333 * 16 14 12 19 19 N 1.31617 * 119.99797 * 161.68356 * 18 16 14 20 20 Si 1.86800 * 120.00176 * 341.68910 * 18 16 14 21 21 H 1.48496 * 109.47567 * 95.35099 * 20 18 16 22 22 H 1.48494 * 109.47307 * 215.35947 * 20 18 16 23 23 H 1.48507 * 109.46686 * 335.35543 * 20 18 16 24 24 C 1.46922 * 120.63529 * 175.70571 * 8 6 5 25 25 C 1.54883 * 110.59955 * 62.70135 * 5 4 3 26 26 C 1.54893 * 102.75149 * 156.67291 * 25 5 4 27 27 C 1.54266 * 104.19259 * 322.05705 * 26 25 5 28 28 C 1.53869 * 106.60013 * 23.60885 * 27 26 25 29 29 H 1.08998 * 109.47055 * 304.80072 * 1 2 3 30 30 H 1.08999 * 109.47516 * 64.80005 * 1 2 3 31 31 H 1.08999 * 109.47565 * 184.80915 * 1 2 3 32 32 H 1.09008 * 109.46421 * 64.79485 * 3 2 1 33 33 H 1.09005 * 109.47346 * 304.80111 * 3 2 1 34 34 H 1.09002 * 109.46378 * 64.84805 * 4 3 2 35 35 H 1.09004 * 109.46852 * 304.85748 * 4 3 2 36 36 H 1.09005 * 109.58457 * 353.41240 * 9 8 6 37 37 H 1.08998 * 109.59186 * 113.83814 * 9 8 6 38 38 H 1.09006 * 109.56255 * 185.54485 * 10 9 8 39 39 H 1.09003 * 109.36052 * 65.50102 * 10 9 8 40 40 H 1.09003 * 109.45721 * 301.21932 * 11 10 9 41 41 H 1.08998 * 109.46333 * 181.26116 * 11 10 9 42 42 H 1.09007 * 109.46792 * 86.26869 * 15 14 12 43 43 H 1.09004 * 109.46655 * 206.26278 * 15 14 12 44 44 H 1.08993 * 109.47691 * 326.26624 * 15 14 12 45 45 H 0.97008 * 119.99944 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.59251 * 246.16070 * 24 8 6 47 47 H 1.09005 * 109.58368 * 6.58944 * 24 8 6 48 48 H 1.09007 * 110.75790 * 274.98501 * 25 5 4 49 49 H 1.09001 * 110.75922 * 38.35694 * 25 5 4 50 50 H 1.08997 * 110.48503 * 203.37405 * 26 25 5 51 51 H 1.08999 * 110.48353 * 80.73224 * 26 25 5 52 52 H 1.08998 * 110.02913 * 264.32034 * 27 26 25 53 53 H 1.09000 * 110.03070 * 142.89157 * 27 26 25 54 54 H 1.08999 * 110.03149 * 240.71527 * 28 27 26 55 55 H 1.09003 * 110.03576 * 119.28531 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5309 1.1867 -0.1206 5 6 4.1620 2.5751 0.0009 6 6 3.6516 3.4822 -1.0888 7 8 3.0832 4.5145 -0.8018 8 7 3.8315 3.1493 -2.3823 9 6 4.6095 1.9575 -2.7473 10 6 5.7058 2.3612 -3.7316 11 6 5.0770 3.0903 -4.9211 12 6 4.3746 4.3586 -4.4310 13 1 5.0952 5.0012 -3.9252 14 7 3.7999 5.0722 -5.5741 15 6 2.8004 4.4155 -6.4203 16 6 4.1971 6.3530 -5.8517 17 1 4.3623 7.0536 -5.0466 18 6 4.3873 6.7508 -7.1679 19 7 4.4115 8.0313 -7.4714 20 14 4.6087 5.4688 -8.5085 21 1 3.3007 5.2014 -9.1586 22 1 5.5711 5.9725 -9.5210 23 1 5.1305 4.2133 -7.9112 24 6 3.2585 3.9743 -3.4545 25 6 3.8722 3.1854 1.3945 26 6 5.0190 4.2128 1.5630 27 6 6.2453 3.5168 0.9372 28 6 5.7005 2.4756 -0.0560 29 1 -0.3633 0.5865 0.8438 30 1 -0.3634 0.4375 -0.9298 31 1 -0.3634 -1.0240 0.0862 32 1 1.7582 1.8152 0.9299 33 1 1.6223 1.8759 -0.8439 34 1 3.7859 0.7549 -1.0884 35 1 3.9093 0.5445 0.6748 36 1 5.0627 1.5291 -1.8533 37 1 3.9546 1.2227 -3.2154 38 1 6.2258 1.4705 -4.0842 39 1 6.4139 3.0227 -3.2324 40 1 4.3509 2.4370 -5.4049 41 1 5.8555 3.3593 -5.6350 42 1 1.8091 4.5598 -5.9904 43 1 2.8295 4.8489 -7.4200 44 1 3.0188 3.3493 -6.4800 45 1 4.5448 8.3093 -8.3912 46 1 2.4910 3.4074 -3.9815 47 1 2.8206 4.8764 -3.0269 48 1 2.9027 3.6837 1.4040 49 1 3.9221 2.4203 2.1693 50 1 5.1947 4.4187 2.6189 51 1 4.7882 5.1335 1.0271 52 1 6.8304 3.0227 1.7129 53 1 6.8614 4.2469 0.4123 54 1 6.0211 1.4760 0.2376 55 1 6.0522 2.7002 -1.0630 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267118197.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:27 Heat of formation + Delta-G solvation = -80.489077 kcal Electronic energy + Delta-G solvation = -32524.746766 eV Core-core repulsion = 28561.438812 eV Total energy + Delta-G solvation = -3963.307954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.15821 -39.61371 -38.76235 -37.96161 -36.96231 -34.31291 -33.51689 -33.02381 -31.21680 -29.58012 -28.89203 -28.09200 -26.93334 -26.45171 -25.49467 -23.75465 -23.17424 -22.58933 -21.39524 -20.65317 -19.59134 -18.93172 -17.79480 -17.50429 -17.42364 -17.14157 -16.89290 -16.28395 -16.18962 -15.84091 -15.68264 -15.38885 -15.31169 -15.13673 -14.86750 -14.54794 -14.29276 -14.20108 -14.01319 -13.88632 -13.80611 -13.70166 -13.22477 -12.91353 -12.75275 -12.57279 -12.42370 -12.22053 -12.21324 -12.14551 -12.08182 -11.96242 -11.90553 -11.74965 -11.71874 -11.68856 -11.42224 -11.35501 -11.26534 -10.77976 -10.67353 -10.51394 -9.71338 -8.74782 -8.23481 -5.69614 1.29544 1.39620 1.52820 1.61560 1.96190 2.39092 2.69716 3.03904 3.28457 3.35651 3.52852 3.62499 3.92317 3.94460 3.97773 4.08567 4.11049 4.13023 4.22036 4.32813 4.33064 4.43503 4.46066 4.48888 4.50913 4.52867 4.54648 4.59121 4.65095 4.68292 4.74362 4.79799 4.82299 4.83219 4.87468 4.91517 4.94855 4.99752 5.03044 5.05549 5.08422 5.11696 5.15885 5.26673 5.35150 5.39284 5.45892 5.50532 5.51498 5.88904 6.12124 6.13879 6.47028 6.92859 7.19365 7.55394 7.97010 8.96099 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.003482 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.671950 B = 8039.242454 C = 8803.639161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.061 3.939 4 C -0.106 4.106 5 C -0.072 4.072 6 C 0.519 3.481 7 O -0.588 6.588 8 N -0.604 5.604 9 C 0.090 3.910 10 C -0.125 4.125 11 C -0.129 4.129 12 C 0.168 3.832 13 H 0.039 0.961 14 N -0.616 5.616 15 C 0.107 3.893 16 C -0.267 4.267 17 H 0.026 0.974 18 C -0.023 4.023 19 N -0.955 5.955 20 Si 0.963 3.037 21 H -0.274 1.274 22 H -0.309 1.309 23 H -0.246 1.246 24 C 0.114 3.886 25 C -0.100 4.100 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.119 4.119 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.023 0.977 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.020 0.980 43 H 0.030 0.970 44 H 0.067 0.933 45 H 0.265 0.735 46 H 0.071 0.929 47 H 0.048 0.952 48 H 0.052 0.948 49 H 0.105 0.895 50 H 0.082 0.918 51 H 0.032 0.968 52 H 0.093 0.907 53 H 0.050 0.950 54 H 0.117 0.883 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.937 -23.923 17.730 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C -0.016 4.016 4 C -0.143 4.143 5 C -0.075 4.075 6 C 0.309 3.691 7 O -0.468 6.468 8 N -0.336 5.336 9 C -0.031 4.031 10 C -0.164 4.164 11 C -0.169 4.169 12 C 0.061 3.939 13 H 0.058 0.942 14 N -0.340 5.340 15 C -0.037 4.037 16 C -0.397 4.397 17 H 0.044 0.956 18 C -0.219 4.219 19 N -0.599 5.599 20 Si 0.790 3.210 21 H -0.201 1.201 22 H -0.238 1.238 23 H -0.169 1.169 24 C -0.011 4.011 25 C -0.138 4.138 26 C -0.166 4.166 27 C -0.160 4.160 28 C -0.156 4.156 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.123 0.877 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.039 0.961 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.123 0.877 50 H 0.100 0.900 51 H 0.051 0.949 52 H 0.112 0.888 53 H 0.069 0.931 54 H 0.135 0.865 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.754 -23.436 17.747 29.407 hybrid contribution -0.566 1.431 -1.221 1.964 sum 0.189 -22.005 16.526 27.520 Atomic orbital electron populations 1.22907 0.79957 1.03981 1.00269 1.87790 1.20963 1.27838 1.95498 1.22548 0.94980 0.84383 0.99689 1.21818 0.92256 0.94148 1.06035 1.21593 0.98102 0.94219 0.93623 1.21163 0.78125 0.86024 0.83823 1.90668 1.45384 1.27710 1.83082 1.48170 1.52979 1.27552 1.04884 1.22406 0.93545 0.86151 1.00989 1.21859 0.97671 1.01608 0.95242 1.21991 0.99863 0.96455 0.98561 1.20781 0.92888 0.92906 0.87298 0.94231 1.44072 1.45230 1.12737 1.31985 1.21408 0.91656 0.96841 0.93751 1.18595 1.42338 0.86870 0.91877 0.95634 1.26255 0.97624 0.97595 1.00426 1.69994 1.53346 1.16885 1.19648 0.85575 0.77123 0.80365 0.77914 1.20106 1.23763 1.16937 1.21830 0.96524 0.94579 0.88159 1.22473 0.98576 0.98492 0.94219 1.22349 0.95321 0.97763 1.01177 1.22151 0.97298 0.97708 0.98862 1.22528 0.90013 1.02323 1.00721 0.93514 0.94455 0.87654 0.92918 0.95822 0.88767 0.87003 0.85718 0.89630 0.87169 0.92129 0.91036 0.93181 0.96136 0.95172 0.91436 0.92647 0.91129 0.93330 0.92911 0.87692 0.89982 0.94888 0.88797 0.93132 0.86495 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -7.85 10.70 -148.98 -1.59 -9.44 16 3 C 0.06 1.20 5.49 71.98 0.40 1.60 16 4 C -0.11 -1.59 4.20 30.59 0.13 -1.46 16 5 C -0.07 -1.39 0.27 -51.86 -0.01 -1.41 16 6 C 0.52 15.45 5.17 87.66 0.45 15.91 16 7 O -0.59 -23.59 14.51 -3.05 -0.04 -23.63 16 8 N -0.60 -17.07 2.97 -819.73 -2.43 -19.50 16 9 C 0.09 1.69 3.87 86.22 0.33 2.02 16 10 C -0.13 -2.59 5.92 30.53 0.18 -2.41 16 11 C -0.13 -3.94 5.11 30.62 0.16 -3.79 16 12 C 0.17 6.73 2.75 45.07 0.12 6.85 16 13 H 0.04 1.82 7.89 -2.39 -0.02 1.80 16 14 N -0.62 -29.70 2.35 -702.32 -1.65 -31.35 16 15 C 0.11 4.50 8.34 127.77 1.07 5.56 16 16 C -0.27 -15.91 9.84 84.03 0.83 -15.08 16 17 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 18 C -0.02 -1.37 5.34 84.86 0.45 -0.91 16 19 N -0.95 -61.55 13.97 21.65 0.30 -61.25 16 20 Si 0.96 46.40 24.87 68.60 1.71 48.11 16 21 H -0.27 -12.54 6.73 99.48 0.67 -11.87 16 22 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 23 H -0.25 -10.87 7.11 99.48 0.71 -10.16 16 24 C 0.11 4.14 5.80 86.36 0.50 4.64 16 25 C -0.10 -1.95 4.51 31.88 0.14 -1.81 16 26 C -0.13 -2.67 6.52 31.67 0.21 -2.47 16 27 C -0.12 -2.03 6.80 31.32 0.21 -1.81 16 28 C -0.12 -1.75 4.56 31.32 0.14 -1.60 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.58 16 31 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.04 7.03 -2.38 -0.02 1.02 16 33 H 0.02 0.58 7.44 -2.38 -0.02 0.56 16 34 H 0.09 1.26 5.10 -2.39 -0.01 1.25 16 35 H 0.11 1.16 8.13 -2.38 -0.02 1.14 16 36 H 0.13 1.64 3.19 -2.38 -0.01 1.63 16 37 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 38 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.06 1.36 7.65 -2.39 -0.02 1.34 16 40 H 0.07 1.98 6.74 -2.39 -0.02 1.97 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.03 1.36 3.46 -2.38 -0.01 1.36 16 44 H 0.07 2.32 6.46 -2.39 -0.02 2.30 16 45 H 0.26 16.01 8.31 -92.70 -0.77 15.24 16 46 H 0.07 2.39 7.51 -2.39 -0.02 2.37 16 47 H 0.05 2.17 7.00 -2.38 -0.02 2.15 16 48 H 0.05 1.31 7.15 -2.38 -0.02 1.30 16 49 H 0.10 1.39 8.06 -2.39 -0.02 1.37 16 50 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.03 0.94 7.65 -2.39 -0.02 0.93 16 52 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 54 H 0.12 0.89 7.83 -2.39 -0.02 0.87 16 55 H 0.07 1.19 5.30 -2.39 -0.01 1.18 16 Total: -1.00 -79.10 397.14 3.67 -75.43 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.82 Total: 16.18 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 6.56 Total: 5.46 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -3.78 Total: -112.10 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.64 Total: -33.08 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.71 Total: 48.11 kcal Total: -79.10 3.67 -75.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267118197.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.060 kcal (2) G-P(sol) polarization free energy of solvation -79.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds