Wall clock time and date at job start Tue Mar 31 2020 22:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99498 * 2 1 4 4 H 1.09000 * 109.47643 * 30.00481 * 3 2 1 5 5 C 1.50696 * 109.47158 * 269.99756 * 3 2 1 6 6 O 1.21277 * 120.00143 * 355.00215 * 5 3 2 7 7 N 1.34780 * 119.99924 * 175.00329 * 5 3 2 8 8 C 1.46502 * 119.99986 * 180.02562 * 7 5 3 9 9 C 1.52991 * 109.47193 * 179.97438 * 8 7 5 10 10 C 1.52995 * 109.47244 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47455 * 184.98110 * 10 9 8 12 12 H 1.08996 * 109.87156 * 54.31872 * 11 10 9 13 13 C 1.54321 * 110.00939 * 293.22403 * 11 10 9 14 14 C 1.55158 * 102.94223 * 218.31562 * 13 11 10 15 15 C 1.54904 * 101.58196 * 35.50093 * 14 13 11 16 16 N 1.47024 * 109.88640 * 175.33744 * 11 10 9 17 17 C 1.36936 * 125.64631 * 298.47952 * 16 11 10 18 18 H 1.08004 * 120.00034 * 347.77569 * 17 16 11 19 19 C 1.38810 * 119.99670 * 167.77710 * 17 16 11 20 20 N 1.31610 * 120.00534 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99775 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46767 * 60.00129 * 21 19 17 23 23 H 1.48499 * 109.47180 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47198 * 300.00284 * 21 19 17 25 25 C 1.53004 * 109.46703 * 149.99965 * 3 2 1 26 26 C 1.54264 * 110.03383 * 57.16757 * 25 3 2 27 27 C 1.54885 * 104.19781 * 217.10725 * 26 25 3 28 28 C 1.54890 * 102.74920 * 37.93567 * 27 26 25 29 29 C 1.53871 * 110.03169 * 299.99963 * 25 3 2 30 30 H 1.09000 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47167 * 299.99621 * 1 2 3 32 32 H 1.08997 * 109.47329 * 60.00047 * 1 2 3 33 33 H 0.97000 * 120.00243 * 0.02562 * 7 5 3 34 34 H 1.08998 * 109.46741 * 60.00035 * 8 7 5 35 35 H 1.09002 * 109.47059 * 300.00027 * 8 7 5 36 36 H 1.09001 * 109.47405 * 59.99847 * 9 8 7 37 37 H 1.09002 * 109.47162 * 299.99991 * 9 8 7 38 38 H 1.09001 * 109.47098 * 64.98235 * 10 9 8 39 39 H 1.09004 * 109.47371 * 304.97987 * 10 9 8 40 40 H 1.08997 * 110.72553 * 99.94954 * 13 11 10 41 41 H 1.09005 * 110.72301 * 336.67742 * 13 11 10 42 42 H 1.09000 * 111.00379 * 277.42505 * 14 13 11 43 43 H 1.09004 * 111.00601 * 153.57928 * 14 13 11 44 44 H 1.09001 * 110.36951 * 81.82975 * 15 14 13 45 45 H 1.09003 * 110.36888 * 204.04206 * 15 14 13 46 46 H 0.97000 * 120.00612 * 180.02562 * 20 19 17 47 47 H 1.08998 * 110.01529 * 178.60918 * 25 3 2 48 48 H 1.09004 * 110.48644 * 335.78304 * 26 25 3 49 49 H 1.09000 * 110.48753 * 98.42348 * 26 25 3 50 50 H 1.09000 * 110.75339 * 279.62707 * 27 26 25 51 51 H 1.09005 * 110.75914 * 156.25562 * 27 26 25 52 52 H 1.08999 * 110.48339 * 203.37921 * 28 27 26 53 53 H 1.09003 * 110.47876 * 80.74272 * 28 27 26 54 54 H 1.09001 * 110.03244 * 238.56853 * 29 25 3 55 55 H 1.08992 * 110.03409 * 359.95015 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9792 1.0107 -2.3413 7 7 2.6588 3.0125 -1.6685 8 6 2.8569 3.4588 -3.0498 9 6 3.3617 4.9031 -3.0516 10 6 3.5680 5.3694 -4.4941 11 6 4.1893 6.7676 -4.4942 12 1 5.1010 6.7679 -3.8969 13 6 3.1864 7.7912 -3.9217 14 6 3.4158 9.0393 -4.8145 15 6 3.7126 8.3884 -6.1885 16 7 4.4943 7.1792 -5.8723 17 6 5.3614 6.5447 -6.7213 18 1 6.0333 5.7892 -6.3415 19 6 5.3769 6.8727 -8.0700 20 7 4.5578 7.7930 -8.5330 21 14 6.5603 6.0078 -9.2280 22 1 6.2859 4.5484 -9.2168 23 1 6.3802 6.5352 -10.6045 24 1 7.9559 6.2525 -8.7832 25 6 3.3588 1.2633 0.7213 26 6 4.2869 0.2321 0.0467 27 6 5.0608 -0.4103 1.2246 28 6 3.9820 -0.5030 2.3323 29 6 3.1650 0.7959 2.1744 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.8474 3.6153 -0.9323 34 1 1.9108 3.4043 -3.5884 35 1 3.5902 2.8166 -3.5375 36 1 4.3076 4.9581 -2.5128 37 1 2.6280 5.5450 -2.5640 38 1 2.6068 5.3990 -5.0073 39 1 4.2334 4.6761 -5.0085 40 1 3.4159 8.0149 -2.8799 41 1 2.1638 7.4274 -4.0228 42 1 4.2699 9.6187 -4.4640 43 1 2.5189 9.6571 -4.8604 44 1 2.7828 8.1188 -6.6894 45 1 4.2954 9.0668 -6.8117 46 1 4.5683 8.0220 -9.4755 47 1 3.8216 2.2500 0.7050 48 1 3.7010 -0.5209 -0.4805 49 1 4.9757 0.7284 -0.6369 50 1 5.8845 0.2299 1.5404 51 1 5.4228 -1.4021 0.9539 52 1 4.4485 -0.5432 3.3166 53 1 3.3470 -1.3747 2.1741 54 1 3.5346 1.5554 2.8634 55 1 2.1101 0.6000 2.3661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267179024.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:55 Heat of formation + Delta-G solvation = -106.095295 kcal Electronic energy + Delta-G solvation = -30145.857615 eV Core-core repulsion = 26181.439292 eV Total energy + Delta-G solvation = -3964.418323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.39738 -39.55552 -39.08843 -37.74423 -36.59616 -34.70809 -33.75522 -31.87003 -31.21052 -29.59426 -29.41841 -27.58210 -26.87513 -26.39683 -25.02566 -22.72387 -22.01761 -21.85733 -21.37665 -20.78576 -20.50898 -18.77099 -18.49073 -17.81445 -17.15167 -16.98351 -16.55114 -16.52120 -16.21844 -15.97350 -15.75786 -15.46541 -15.23337 -15.02770 -14.36448 -14.12821 -14.07178 -13.95566 -13.69084 -13.66596 -13.55485 -13.12769 -13.00644 -12.73137 -12.67885 -12.55854 -12.34927 -12.22922 -12.04327 -11.93783 -11.89349 -11.83403 -11.69329 -11.64741 -11.58495 -11.51739 -11.42706 -11.32348 -11.30404 -11.14833 -10.65405 -10.27737 -10.13556 -8.78977 -7.84260 -5.19830 1.43312 1.46088 1.51962 1.54494 2.05734 2.49567 2.78992 3.33031 3.53342 3.65265 3.70015 3.79089 3.86751 3.96787 4.00526 4.08988 4.17496 4.25993 4.32742 4.36007 4.43325 4.45880 4.52398 4.62003 4.62389 4.66089 4.71397 4.79008 4.80567 4.82860 4.84734 4.85730 4.91534 4.99435 5.01746 5.04490 5.11591 5.14264 5.24799 5.28376 5.33565 5.34951 5.40610 5.47718 5.50701 5.52446 5.55323 5.69482 5.70866 5.81331 6.03111 6.28260 6.56841 7.13283 7.23657 7.83484 8.49643 9.26136 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.002125 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.833053 B =13175.178100 C =13726.038420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.372 6.372 3 C 0.083 3.917 4 H 0.118 0.882 5 C 0.484 3.516 6 O -0.581 6.581 7 N -0.711 5.711 8 C 0.125 3.875 9 C -0.106 4.106 10 C -0.113 4.113 11 C 0.152 3.848 12 H 0.036 0.964 13 C -0.110 4.110 14 C -0.137 4.137 15 C 0.172 3.828 16 N -0.620 5.620 17 C -0.230 4.230 18 H 0.076 0.924 19 C -0.067 4.067 20 N -0.950 5.950 21 Si 0.970 3.030 22 H -0.281 1.281 23 H -0.295 1.295 24 H -0.276 1.276 25 C -0.082 4.082 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.120 4.120 29 C -0.108 4.108 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.418 0.582 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.034 0.966 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.080 0.920 44 H -0.012 1.012 45 H 0.034 0.966 46 H 0.245 0.755 47 H 0.110 0.890 48 H 0.049 0.951 49 H 0.051 0.949 50 H 0.076 0.924 51 H 0.059 0.941 52 H 0.077 0.923 53 H 0.055 0.945 54 H 0.086 0.914 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 -10.121 28.570 30.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.290 6.290 3 C 0.022 3.978 4 H 0.136 0.864 5 C 0.270 3.730 6 O -0.460 6.460 7 N -0.365 5.365 8 C 0.001 3.999 9 C -0.144 4.144 10 C -0.153 4.153 11 C 0.046 3.954 12 H 0.054 0.946 13 C -0.148 4.148 14 C -0.176 4.176 15 C 0.047 3.953 16 N -0.344 5.344 17 C -0.360 4.360 18 H 0.093 0.907 19 C -0.260 4.260 20 N -0.599 5.599 21 Si 0.799 3.201 22 H -0.208 1.208 23 H -0.221 1.221 24 H -0.202 1.202 25 C -0.101 4.101 26 C -0.162 4.162 27 C -0.159 4.159 28 C -0.158 4.158 29 C -0.146 4.146 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.256 0.744 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.006 0.994 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.128 0.872 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.095 0.905 51 H 0.078 0.922 52 H 0.095 0.905 53 H 0.074 0.926 54 H 0.105 0.895 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.094 -10.823 27.702 30.360 hybrid contribution 0.388 -0.143 -1.765 1.813 sum -5.706 -10.967 25.937 28.733 Atomic orbital electron populations 1.22996 0.79832 1.03945 1.00405 1.87982 1.20976 1.25793 1.94212 1.22266 0.98386 0.87021 0.90164 0.86441 1.22082 0.76171 0.81570 0.93132 1.90703 1.52113 1.55149 1.48023 1.45945 1.67081 1.14273 1.09204 1.21220 0.99947 0.95867 0.82861 1.21622 1.02778 0.93395 0.96620 1.21827 0.99610 0.97809 0.96058 1.21227 0.95732 0.93046 0.85427 0.94579 1.22585 0.98600 0.94126 0.99492 1.22885 1.01213 0.97512 0.95980 1.21254 0.92664 0.87874 0.93529 1.44865 1.48931 1.29178 1.11445 1.19268 1.11477 1.16381 0.88858 0.90650 1.25631 1.01375 1.00642 0.98344 1.70139 1.41437 1.35188 1.13174 0.85277 0.78867 0.78053 0.77935 1.20753 1.22108 1.20168 1.22008 0.91268 1.01164 0.95662 1.22350 0.97627 0.98234 0.97965 1.22477 0.98032 1.00456 0.94962 1.22310 0.96877 0.97903 0.98695 1.22102 1.01037 0.97657 0.93794 0.88611 0.91171 0.95448 0.74439 0.93245 0.93827 0.89871 0.88900 0.94140 0.94737 0.88296 0.91092 0.91764 0.90118 0.99404 0.94726 0.94536 0.87185 0.93207 0.92992 0.90483 0.92235 0.90456 0.92565 0.89504 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.81 113.37 1.23 1.60 16 2 O -0.37 -7.62 8.34 -129.99 -1.08 -8.70 16 3 C 0.08 1.35 2.05 29.85 0.06 1.41 16 4 H 0.12 1.12 7.79 -2.39 -0.02 1.10 16 5 C 0.48 11.54 6.53 87.66 0.57 12.11 16 6 O -0.58 -20.41 16.51 15.97 0.26 -20.15 16 7 N -0.71 -13.56 5.52 -463.07 -2.56 -16.12 16 8 C 0.13 3.16 5.67 86.38 0.49 3.65 16 9 C -0.11 -2.41 5.10 30.59 0.16 -2.25 16 10 C -0.11 -3.90 4.71 30.59 0.14 -3.76 16 11 C 0.15 5.76 3.16 45.34 0.14 5.90 16 12 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 13 C -0.11 -3.30 5.69 31.78 0.18 -3.12 16 14 C -0.14 -4.85 7.08 31.98 0.23 -4.63 16 15 C 0.17 8.54 5.45 86.85 0.47 9.01 16 16 N -0.62 -31.52 3.13 -668.27 -2.09 -33.61 16 17 C -0.23 -13.01 9.73 84.03 0.82 -12.19 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.07 -3.90 5.47 84.86 0.46 -3.43 16 20 N -0.95 -58.37 10.48 21.65 0.23 -58.14 16 21 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 C -0.08 -1.07 2.79 -10.07 -0.03 -1.10 16 26 C -0.12 -2.31 5.67 31.67 0.18 -2.13 16 27 C -0.12 -1.74 6.91 31.88 0.22 -1.52 16 28 C -0.12 -1.42 6.83 31.67 0.22 -1.20 16 29 C -0.11 -1.05 6.22 31.32 0.19 -0.86 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 32 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.42 4.55 8.26 -92.71 -0.77 3.78 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.66 7.63 -2.39 -0.02 1.64 16 38 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 39 H 0.03 1.38 7.85 -2.39 -0.02 1.36 16 40 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.07 2.01 7.78 -2.38 -0.02 1.99 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 44 H -0.01 -0.66 8.11 -2.39 -0.02 -0.68 16 45 H 0.03 1.96 6.75 -2.39 -0.02 1.94 16 46 H 0.25 14.74 8.31 -92.71 -0.77 13.96 16 47 H 0.11 0.95 7.93 -2.39 -0.02 0.93 16 48 H 0.05 1.24 7.12 -2.38 -0.02 1.23 16 49 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 52 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 53 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 55 H 0.07 0.68 7.42 -2.39 -0.02 0.66 16 Total: -1.00 -78.09 425.77 2.60 -75.50 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.07 Total: 14.67 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 5.74 Total: -2.50 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.42 Total: -107.87 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.82 Total: -28.85 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -78.09 2.60 -75.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267179024.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.597 kcal (2) G-P(sol) polarization free energy of solvation -78.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds