Wall clock time and date at job start Tue Mar 31 2020 22:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00104 * 2 1 4 4 H 1.09006 * 109.47464 * 30.00045 * 3 2 1 5 5 C 1.50700 * 109.47478 * 269.99985 * 3 2 1 6 6 O 1.21281 * 119.99581 * 355.27545 * 5 3 2 7 7 N 1.34770 * 120.00380 * 174.99867 * 5 3 2 8 8 C 1.46504 * 120.00487 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.47414 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.47052 * 180.02562 * 9 8 7 11 11 C 1.52991 * 109.47093 * 185.90763 * 10 9 8 12 12 H 1.09003 * 109.87543 * 46.23226 * 11 10 9 13 13 C 1.54324 * 109.88408 * 167.24343 * 11 10 9 14 14 C 1.55152 * 102.94200 * 141.61078 * 13 11 10 15 15 C 1.54913 * 101.58194 * 324.50136 * 14 13 11 16 16 N 1.47023 * 109.88322 * 285.21331 * 11 10 9 17 17 C 1.36937 * 125.64478 * 61.60993 * 16 11 10 18 18 H 1.08001 * 120.00049 * 315.51581 * 17 16 11 19 19 C 1.38810 * 119.99797 * 135.52146 * 17 16 11 20 20 N 1.31625 * 119.99954 * 171.40024 * 19 17 16 21 21 Si 1.86797 * 120.00354 * 351.39982 * 19 17 16 22 22 H 1.48503 * 109.47340 * 93.79976 * 21 19 17 23 23 H 1.48499 * 109.47462 * 213.80099 * 21 19 17 24 24 H 1.48503 * 109.47206 * 333.80142 * 21 19 17 25 25 C 1.53002 * 109.47323 * 149.99722 * 3 2 1 26 26 C 1.54272 * 110.02837 * 57.16775 * 25 3 2 27 27 C 1.54889 * 104.19579 * 217.10370 * 26 25 3 28 28 C 1.54897 * 102.74561 * 37.94555 * 27 26 25 29 29 C 1.53871 * 110.03553 * 300.00384 * 25 3 2 30 30 H 1.08995 * 109.46980 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47066 * 300.00322 * 1 2 3 32 32 H 1.09001 * 109.46654 * 59.99793 * 1 2 3 33 33 H 0.97004 * 120.00208 * 0.02562 * 7 5 3 34 34 H 1.08997 * 109.46849 * 300.00513 * 8 7 5 35 35 H 1.08999 * 109.46853 * 60.00017 * 8 7 5 36 36 H 1.08996 * 109.46893 * 300.00103 * 9 8 7 37 37 H 1.08999 * 109.47221 * 60.00090 * 9 8 7 38 38 H 1.09000 * 109.46734 * 305.91035 * 10 9 8 39 39 H 1.08999 * 109.47173 * 65.90403 * 10 9 8 40 40 H 1.08993 * 110.72301 * 259.97665 * 13 11 10 41 41 H 1.08998 * 110.71935 * 23.24850 * 13 11 10 42 42 H 1.08998 * 111.00797 * 82.57465 * 14 13 11 43 43 H 1.09005 * 111.00475 * 206.39240 * 14 13 11 44 44 H 1.08999 * 110.36598 * 155.84876 * 15 14 13 45 45 H 1.09005 * 110.36353 * 278.17064 * 15 14 13 46 46 H 0.97003 * 120.00006 * 180.02562 * 20 19 17 47 47 H 1.08999 * 110.02030 * 178.60755 * 25 3 2 48 48 H 1.09000 * 110.48893 * 335.78574 * 26 25 3 49 49 H 1.09001 * 110.48301 * 98.42909 * 26 25 3 50 50 H 1.08995 * 110.75787 * 279.63028 * 27 26 25 51 51 H 1.09002 * 110.75717 * 156.25717 * 27 26 25 52 52 H 1.09001 * 110.48412 * 203.37803 * 28 27 26 53 53 H 1.08998 * 110.48578 * 80.73415 * 28 27 26 54 54 H 1.08993 * 110.03282 * 238.56978 * 29 25 3 55 55 H 1.09004 * 110.02841 * 359.94561 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2146 1.7644 -1.4208 6 8 1.9744 1.0123 -2.3414 7 7 2.6589 3.0124 -1.6685 8 6 2.8581 3.4584 -3.0497 9 6 3.3640 4.9024 -3.0515 10 6 3.5714 5.3684 -4.4940 11 6 4.2149 6.7563 -4.4940 12 1 5.0459 6.7796 -3.7890 13 6 4.7194 7.1009 -5.9112 14 6 4.3912 8.6119 -6.0390 15 6 3.0588 8.7082 -5.2545 16 7 3.2167 7.7703 -4.1240 17 6 2.5460 7.8321 -2.9317 18 1 2.1295 6.9343 -2.4993 19 6 2.4013 9.0485 -2.2790 20 7 1.6171 9.1412 -1.2259 21 14 3.3196 10.5541 -2.8949 22 1 2.4478 11.3213 -3.8206 23 1 3.6935 11.4120 -1.7420 24 1 4.5474 10.1260 -3.6121 25 6 3.3589 1.2633 0.7213 26 6 4.2869 0.2319 0.0467 27 6 5.0608 -0.4104 1.2246 28 6 3.9820 -0.5032 2.3322 29 6 3.1652 0.7959 2.1745 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.8475 3.6152 -0.9323 34 1 3.5919 2.8162 -3.5366 35 1 1.9125 3.4037 -3.5891 36 1 2.6305 5.5449 -2.5644 37 1 4.3096 4.9568 -2.5122 38 1 4.2234 4.6655 -5.0126 39 1 2.6086 5.4142 -5.0030 40 1 5.7932 6.9316 -5.9901 41 1 4.1808 6.5243 -6.6631 42 1 5.1648 9.2208 -5.5713 43 1 4.2521 8.8946 -7.0826 44 1 2.9082 9.7228 -4.8858 45 1 2.2238 8.4054 -5.8865 46 1 1.5158 9.9914 -0.7700 47 1 3.8218 2.2499 0.7050 48 1 3.7010 -0.5210 -0.4806 49 1 4.9757 0.7282 -0.6369 50 1 5.8846 0.2298 1.5404 51 1 5.4228 -1.4023 0.9539 52 1 4.4484 -0.5434 3.3166 53 1 3.3469 -1.3748 2.1741 54 1 3.5347 1.5554 2.8634 55 1 2.1101 0.6000 2.3661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267179025.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:00 Heat of formation + Delta-G solvation = -98.734624 kcal Electronic energy + Delta-G solvation = -30676.475008 eV Core-core repulsion = 26712.375868 eV Total energy + Delta-G solvation = -3964.099140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40252 -39.71156 -39.11369 -37.75200 -36.52345 -34.59049 -33.98735 -31.89469 -31.69944 -29.79684 -29.55555 -27.60218 -26.90371 -26.23427 -25.03884 -22.89731 -22.04649 -21.72996 -21.31918 -20.89163 -20.55015 -18.90341 -18.45535 -17.90222 -17.82511 -17.10880 -16.57902 -16.51095 -16.29623 -16.02080 -15.57846 -15.44674 -15.08717 -14.95710 -14.65161 -14.15534 -14.13781 -14.09729 -13.92278 -13.80283 -13.51283 -13.43011 -13.07805 -12.95297 -12.58905 -12.49597 -12.42059 -12.35294 -12.13434 -11.94516 -11.90446 -11.88984 -11.69115 -11.60085 -11.49796 -11.47300 -11.37457 -11.33946 -11.28200 -11.13772 -10.62251 -10.28057 -10.11615 -8.52256 -8.09662 -5.64061 1.31651 1.40234 1.52100 1.52778 2.07037 2.45084 2.76837 3.15078 3.41367 3.51966 3.63888 3.76589 3.85039 3.89763 4.01326 4.06105 4.15131 4.16706 4.24968 4.32198 4.44794 4.45558 4.50014 4.56358 4.60861 4.65297 4.69360 4.71975 4.78501 4.78811 4.81998 4.84517 4.88541 4.90170 4.96993 5.00824 5.02867 5.11170 5.18123 5.21348 5.27278 5.27691 5.33895 5.41749 5.43666 5.45996 5.50411 5.54938 5.66495 5.98887 6.02615 6.39028 6.52275 6.93744 7.17587 7.59919 8.33181 9.04497 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.002507 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.984411 B =11166.889854 C =11686.199729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.367 6.367 3 C 0.081 3.919 4 H 0.104 0.896 5 C 0.488 3.512 6 O -0.575 6.575 7 N -0.717 5.717 8 C 0.132 3.868 9 C -0.126 4.126 10 C -0.108 4.108 11 C 0.148 3.852 12 H 0.033 0.967 13 C -0.115 4.115 14 C -0.130 4.130 15 C 0.105 3.895 16 N -0.621 5.621 17 C -0.231 4.231 18 H 0.072 0.928 19 C -0.022 4.022 20 N -0.955 5.955 21 Si 0.948 3.052 22 H -0.289 1.289 23 H -0.314 1.314 24 H -0.250 1.250 25 C -0.084 4.084 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.118 4.118 29 C -0.112 4.112 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.026 0.974 33 H 0.411 0.589 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.017 0.983 45 H 0.031 0.969 46 H 0.260 0.740 47 H 0.100 0.900 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.075 0.925 51 H 0.066 0.934 52 H 0.077 0.923 53 H 0.060 0.940 54 H 0.080 0.920 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 -15.895 2.768 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.284 6.284 3 C 0.020 3.980 4 H 0.122 0.878 5 C 0.275 3.725 6 O -0.455 6.455 7 N -0.370 5.370 8 C 0.008 3.992 9 C -0.164 4.164 10 C -0.147 4.147 11 C 0.043 3.957 12 H 0.051 0.949 13 C -0.153 4.153 14 C -0.168 4.168 15 C -0.018 4.018 16 N -0.348 5.348 17 C -0.360 4.360 18 H 0.089 0.911 19 C -0.218 4.218 20 N -0.600 5.600 21 Si 0.778 3.222 22 H -0.217 1.217 23 H -0.244 1.244 24 H -0.174 1.174 25 C -0.103 4.103 26 C -0.157 4.157 27 C -0.157 4.157 28 C -0.156 4.156 29 C -0.149 4.149 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.035 0.965 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.118 0.882 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.093 0.907 51 H 0.085 0.915 52 H 0.095 0.905 53 H 0.078 0.922 54 H 0.098 0.902 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.176 -16.513 2.295 17.779 hybrid contribution -0.474 1.677 0.134 1.748 sum 5.702 -14.836 2.430 16.079 Atomic orbital electron populations 1.23002 0.79905 1.04109 1.00200 1.87951 1.20865 1.25303 1.94255 1.22207 0.98327 0.86948 0.90558 0.87804 1.21898 0.76149 0.81426 0.93020 1.90658 1.52089 1.55071 1.47655 1.46112 1.66959 1.14232 1.09746 1.21277 1.00003 0.95461 0.82470 1.21926 1.01983 0.93459 0.98994 1.21802 1.00578 0.97059 0.95309 1.21299 0.90387 0.88921 0.95137 0.94934 1.22593 1.01825 0.95233 0.95667 1.22757 0.96066 0.97516 1.00425 1.22089 0.97066 0.92811 0.89884 1.44883 1.45751 1.31946 1.12230 1.18756 1.26926 0.94911 0.95454 0.91128 1.26248 0.98604 1.01435 0.95528 1.69875 1.40901 1.26145 1.23070 0.85745 0.80834 0.79775 0.75804 1.21719 1.24362 1.17430 1.21988 0.91393 1.01084 0.95859 1.22330 0.97442 0.97943 0.98007 1.22471 0.97825 1.00676 0.94736 1.22300 0.96904 0.97481 0.98879 1.22113 1.01075 0.97958 0.93760 0.87917 0.91808 0.95548 0.75284 0.91737 0.93616 0.91413 0.91461 0.90234 0.93440 0.89135 0.89939 0.92268 0.88631 0.96455 0.95111 0.93104 0.88233 0.92649 0.92676 0.90655 0.91501 0.90455 0.92157 0.90154 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.81 113.37 1.23 1.70 16 2 O -0.37 -9.06 8.34 -129.99 -1.08 -10.14 16 3 C 0.08 1.85 2.04 29.85 0.06 1.91 16 4 H 0.10 1.98 7.79 -2.38 -0.02 1.96 16 5 C 0.49 14.39 6.54 87.66 0.57 14.96 16 6 O -0.58 -21.69 16.51 15.96 0.26 -21.43 16 7 N -0.72 -19.74 5.52 -463.06 -2.55 -22.30 16 8 C 0.13 3.95 5.67 86.38 0.49 4.44 16 9 C -0.13 -4.07 4.97 30.59 0.15 -3.91 16 10 C -0.11 -3.39 4.67 30.59 0.14 -3.25 16 11 C 0.15 5.21 3.19 45.34 0.14 5.35 16 12 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 13 C -0.12 -3.15 6.45 31.78 0.20 -2.94 16 14 C -0.13 -3.94 7.03 31.99 0.22 -3.72 16 15 C 0.11 4.25 6.08 86.80 0.53 4.78 16 16 N -0.62 -27.66 2.57 -667.46 -1.72 -29.38 16 17 C -0.23 -12.32 9.67 84.03 0.81 -11.51 16 18 H 0.07 4.00 5.09 -2.91 -0.01 3.98 16 19 C -0.02 -1.25 5.49 84.86 0.47 -0.79 16 20 N -0.95 -57.87 13.97 21.65 0.30 -57.57 16 21 Si 0.95 46.17 24.81 68.60 1.70 47.87 16 22 H -0.29 -13.95 6.97 99.48 0.69 -13.26 16 23 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 24 H -0.25 -11.40 6.21 99.48 0.62 -10.78 16 25 C -0.08 -1.60 2.79 -10.07 -0.03 -1.63 16 26 C -0.12 -2.54 5.67 31.67 0.18 -2.36 16 27 C -0.12 -1.97 6.91 31.89 0.22 -1.75 16 28 C -0.12 -1.78 6.83 31.67 0.22 -1.57 16 29 C -0.11 -1.73 6.22 31.32 0.19 -1.53 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 32 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.41 9.81 8.26 -92.71 -0.77 9.05 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 2.73 4.67 -2.39 -0.01 2.72 16 37 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 38 H 0.08 2.03 8.10 -2.39 -0.02 2.01 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.08 2.00 7.85 -2.39 -0.02 1.98 16 42 H 0.06 1.87 7.57 -2.39 -0.02 1.86 16 43 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 44 H 0.02 0.77 3.62 -2.39 -0.01 0.76 16 45 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 47 H 0.10 1.68 7.93 -2.39 -0.02 1.66 16 48 H 0.05 1.47 7.12 -2.39 -0.02 1.45 16 49 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 53 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 54 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 55 H 0.07 1.07 7.42 -2.38 -0.02 1.05 16 Total: -1.00 -70.45 414.95 2.71 -67.74 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -0.01 Total: 27.02 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.81 Total: -1.81 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -3.97 Total: -109.25 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.82 Total: -31.57 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.70 Total: 47.87 kcal Total: -70.45 2.71 -67.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267179025.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.991 kcal (2) G-P(sol) polarization free energy of solvation -70.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds