Wall clock time and date at job start Tue Mar 31 2020 22:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99834 * 2 1 4 4 H 1.09004 * 109.47336 * 33.57116 * 3 2 1 5 5 C 1.50703 * 109.46802 * 153.56361 * 3 2 1 6 6 O 1.21281 * 119.99850 * 18.22241 * 5 3 2 7 7 N 1.34780 * 119.99926 * 198.21858 * 5 3 2 8 8 C 1.46502 * 119.99870 * 175.09439 * 7 5 3 9 9 C 1.52998 * 109.46923 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.46849 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47204 * 184.93494 * 10 9 8 12 12 H 1.08997 * 109.87318 * 54.18594 * 11 10 9 13 13 C 1.54324 * 110.01154 * 293.08900 * 11 10 9 14 14 C 1.55163 * 102.94182 * 218.31483 * 13 11 10 15 15 C 1.54907 * 101.57922 * 35.50083 * 14 13 11 16 16 N 1.47021 * 109.88712 * 175.19889 * 11 10 9 17 17 C 1.36933 * 125.64980 * 298.48231 * 16 11 10 18 18 H 1.08003 * 120.00108 * 348.21321 * 17 16 11 19 19 C 1.38814 * 120.00570 * 168.21284 * 17 16 11 20 20 N 1.31628 * 119.99497 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00427 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47228 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47276 * 120.00231 * 21 19 17 24 24 H 1.48497 * 109.47069 * 240.00078 * 21 19 17 25 25 C 1.52996 * 109.47672 * 273.56310 * 3 2 1 26 26 C 1.54264 * 110.03482 * 291.05166 * 25 3 2 27 27 C 1.54963 * 104.16212 * 217.13270 * 26 25 3 28 28 C 1.54895 * 102.77618 * 37.88671 * 27 26 25 29 29 C 1.53875 * 110.03530 * 173.82902 * 25 3 2 30 30 H 1.09004 * 109.47318 * 184.94733 * 1 2 3 31 31 H 1.09006 * 109.47023 * 304.93997 * 1 2 3 32 32 H 1.09000 * 109.47847 * 64.94255 * 1 2 3 33 33 H 0.96997 * 119.99934 * 355.09921 * 7 5 3 34 34 H 1.09005 * 109.47146 * 60.00344 * 8 7 5 35 35 H 1.08996 * 109.47289 * 300.00568 * 8 7 5 36 36 H 1.08997 * 109.47250 * 60.00138 * 9 8 7 37 37 H 1.09000 * 109.47115 * 299.99813 * 9 8 7 38 38 H 1.08997 * 109.47525 * 64.93826 * 10 9 8 39 39 H 1.09000 * 109.47798 * 304.93532 * 10 9 8 40 40 H 1.08993 * 110.72023 * 99.95186 * 13 11 10 41 41 H 1.08995 * 110.71845 * 336.67547 * 13 11 10 42 42 H 1.09002 * 111.00433 * 277.42526 * 14 13 11 43 43 H 1.08995 * 111.00428 * 153.57355 * 14 13 11 44 44 H 1.09001 * 110.37049 * 81.83178 * 15 14 13 45 45 H 1.09009 * 110.36584 * 204.03862 * 15 14 13 46 46 H 0.96996 * 119.99506 * 180.02562 * 20 19 17 47 47 H 1.08998 * 110.01465 * 52.43846 * 25 3 2 48 48 H 1.09009 * 110.48322 * 335.77834 * 26 25 3 49 49 H 1.09004 * 110.49079 * 98.42194 * 26 25 3 50 50 H 1.08989 * 110.72156 * 279.57583 * 27 26 25 51 51 H 1.09003 * 110.92390 * 156.28633 * 27 26 25 52 52 H 1.09000 * 110.48435 * 203.40762 * 28 27 26 53 53 H 1.09005 * 110.48829 * 80.76260 * 28 27 26 54 54 H 1.08994 * 110.03309 * 238.56793 * 29 25 3 55 55 H 1.08998 * 110.02958 * 0.02562 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3757 1.9857 0.5683 5 6 3.3768 1.2469 0.6326 6 8 3.9496 0.1834 0.7410 7 7 3.9623 2.3763 1.0777 8 6 5.2414 2.3071 1.7886 9 6 5.6828 3.7180 2.1826 10 6 7.0190 3.6458 2.9244 11 6 7.4000 5.0402 3.4257 12 1 6.5863 5.4554 4.0202 13 6 7.7020 5.9672 2.2294 14 6 8.9013 6.8106 2.7374 15 6 9.6718 5.7728 3.5912 16 7 8.6233 4.9628 4.2376 17 6 8.7650 4.2559 5.4018 18 1 7.8950 3.8503 5.8967 19 6 10.0270 4.0605 5.9460 20 7 11.0874 4.5552 5.3431 21 14 10.2203 3.0968 7.5345 22 1 8.8855 2.6514 8.0087 23 1 11.0802 1.9106 7.2923 24 1 10.8490 3.9618 8.5648 25 6 2.1358 1.8079 -1.4396 26 6 3.2029 0.9885 -2.1942 27 6 3.9053 2.0276 -3.1043 28 6 3.9587 3.2887 -2.2065 29 6 2.6156 3.2699 -1.4477 30 1 -0.3634 -1.0239 0.0886 31 1 -0.3633 0.5886 0.8425 32 1 -0.3635 0.4352 -0.9309 33 1 3.5368 3.2349 0.9274 34 1 5.9938 1.8584 1.1399 35 1 5.1260 1.6990 2.6858 36 1 4.9304 4.1662 2.8314 37 1 5.7982 4.3264 1.2855 38 1 7.7910 3.2795 2.2478 39 1 6.9276 2.9673 3.7726 40 1 6.8464 6.6060 2.0110 41 1 7.9841 5.3851 1.3521 42 1 8.5603 7.6450 3.3504 43 1 9.5115 7.1626 1.9057 44 1 10.2965 5.1464 2.9544 45 1 10.2812 6.2764 4.3417 46 1 11.9693 4.4183 5.7232 47 1 1.1749 1.7275 -1.9480 48 1 3.9149 0.5523 -1.4934 49 1 2.7321 0.2104 -2.7951 50 1 3.3151 2.2164 -4.0009 51 1 4.9105 1.6981 -3.3675 52 1 4.0395 4.1882 -2.8168 53 1 4.7927 3.2245 -1.5076 54 1 1.8882 3.8988 -1.9608 55 1 2.7595 3.6213 -0.4260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267179026.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:04 Heat of formation + Delta-G solvation = -98.092771 kcal Electronic energy + Delta-G solvation = -30677.296279 eV Core-core repulsion = 26713.224972 eV Total energy + Delta-G solvation = -3964.071307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.60683 -39.52811 -38.93320 -37.96547 -36.65002 -34.69932 -33.72023 -31.75228 -31.20169 -29.68942 -29.35851 -27.94708 -26.73189 -26.22161 -25.00364 -22.79057 -22.10635 -21.85937 -21.47328 -20.85770 -20.52661 -18.73035 -18.28498 -17.94252 -17.24495 -16.98141 -16.59380 -16.35930 -16.25463 -16.01337 -15.72423 -15.44502 -15.26156 -15.18660 -14.40330 -14.30869 -14.02103 -13.81556 -13.69232 -13.65293 -13.55931 -13.08974 -13.00069 -12.77032 -12.69731 -12.64633 -12.26565 -12.18173 -11.98814 -11.95843 -11.93155 -11.87284 -11.82337 -11.73587 -11.65138 -11.50007 -11.39114 -11.29955 -11.14498 -10.93088 -10.66307 -10.43402 -10.11277 -8.78571 -7.83704 -5.19137 1.43571 1.44994 1.54336 1.54502 1.87643 2.49857 2.97106 3.33819 3.52426 3.58111 3.68560 3.75429 3.83755 3.96531 4.01723 4.03552 4.17833 4.26200 4.31044 4.36511 4.43676 4.47874 4.50977 4.55035 4.63109 4.63713 4.70281 4.76696 4.80582 4.83391 4.84783 4.85813 4.88342 4.98651 5.00274 5.05151 5.07075 5.14861 5.24265 5.25597 5.30247 5.33385 5.37523 5.42808 5.50207 5.51979 5.53289 5.70303 5.71876 5.82239 6.05978 6.28982 6.55968 7.13928 7.22134 7.84041 8.50055 9.26917 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.002397 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.481469 B =11680.686023 C =12877.993279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.394 6.394 3 C 0.080 3.920 4 H 0.113 0.887 5 C 0.514 3.486 6 O -0.575 6.575 7 N -0.709 5.709 8 C 0.125 3.875 9 C -0.106 4.106 10 C -0.113 4.113 11 C 0.152 3.848 12 H 0.037 0.963 13 C -0.110 4.110 14 C -0.137 4.137 15 C 0.171 3.829 16 N -0.620 5.620 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.069 4.069 20 N -0.951 5.951 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.296 1.296 24 H -0.291 1.291 25 C -0.103 4.103 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.127 4.127 29 C -0.118 4.118 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.415 0.585 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.080 0.920 44 H -0.013 1.013 45 H 0.035 0.965 46 H 0.245 0.755 47 H 0.106 0.894 48 H 0.042 0.958 49 H 0.063 0.937 50 H 0.082 0.918 51 H 0.053 0.947 52 H 0.083 0.917 53 H 0.053 0.947 54 H 0.097 0.903 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.968 1.696 -18.117 30.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.312 6.312 3 C 0.019 3.981 4 H 0.131 0.869 5 C 0.301 3.699 6 O -0.454 6.454 7 N -0.366 5.366 8 C 0.001 3.999 9 C -0.144 4.144 10 C -0.153 4.153 11 C 0.046 3.954 12 H 0.055 0.945 13 C -0.148 4.148 14 C -0.176 4.176 15 C 0.046 3.954 16 N -0.344 5.344 17 C -0.356 4.356 18 H 0.095 0.905 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.799 3.201 22 H -0.191 1.191 23 H -0.223 1.223 24 H -0.218 1.218 25 C -0.122 4.122 26 C -0.164 4.164 27 C -0.161 4.161 28 C -0.165 4.165 29 C -0.156 4.156 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.255 0.745 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.005 0.995 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.124 0.876 48 H 0.061 0.939 49 H 0.081 0.919 50 H 0.100 0.900 51 H 0.072 0.928 52 H 0.101 0.899 53 H 0.072 0.928 54 H 0.116 0.884 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.325 0.719 -17.860 30.186 hybrid contribution 0.783 -0.676 1.204 1.587 sum -23.542 0.043 -16.656 28.838 Atomic orbital electron populations 1.23105 0.78657 1.04049 1.01666 1.88023 1.21863 1.26229 1.95131 1.22289 0.91598 0.86832 0.97421 0.86925 1.20889 0.88127 0.83661 0.77222 1.90707 1.66100 1.31445 1.57155 1.46109 1.23352 1.09379 1.57717 1.21251 0.84662 0.98531 0.95431 1.21625 0.96659 0.94661 1.01496 1.21823 0.96229 0.98624 0.98610 1.21225 0.88695 0.93924 0.91551 0.94517 1.22582 0.98494 0.97313 0.96397 1.22882 0.97909 0.97499 0.99280 1.21266 0.90265 0.90537 0.93320 1.44880 1.09832 1.55733 1.23953 1.19347 0.92425 1.25490 0.98318 0.90543 1.25631 0.95422 1.02408 1.02680 1.70166 0.97672 1.50877 1.41328 0.85125 0.77761 0.77785 0.79442 1.19078 1.22349 1.21849 1.22258 1.01092 0.95943 0.92908 1.22459 0.97530 0.98025 0.98398 1.22516 1.00071 0.95168 0.98388 1.22386 0.97360 0.98247 0.98467 1.22320 0.97718 0.94243 1.01300 0.88899 0.92426 0.91875 0.74465 0.93245 0.93465 0.89816 0.88982 0.94138 0.94594 0.88303 0.91134 0.91759 0.90168 0.99473 0.94627 0.94594 0.87587 0.93948 0.91856 0.89981 0.92773 0.89870 0.92839 0.88399 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.84 113.37 1.23 1.47 16 2 O -0.39 -8.51 9.83 -130.60 -1.28 -9.80 16 3 C 0.08 1.37 2.20 29.85 0.07 1.44 16 4 H 0.11 1.17 7.76 -2.39 -0.02 1.15 16 5 C 0.51 12.86 5.52 87.66 0.48 13.35 16 6 O -0.58 -20.98 15.64 15.34 0.24 -20.74 16 7 N -0.71 -14.03 5.20 -463.05 -2.41 -16.44 16 8 C 0.13 3.18 5.68 86.38 0.49 3.67 16 9 C -0.11 -2.42 5.10 30.59 0.16 -2.26 16 10 C -0.11 -3.88 4.71 30.59 0.14 -3.73 16 11 C 0.15 5.74 3.16 45.34 0.14 5.88 16 12 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 13 C -0.11 -3.29 5.69 31.78 0.18 -3.11 16 14 C -0.14 -4.84 7.09 31.99 0.23 -4.62 16 15 C 0.17 8.50 5.46 86.85 0.47 8.98 16 16 N -0.62 -31.40 3.13 -668.25 -2.09 -33.49 16 17 C -0.23 -12.73 9.72 84.03 0.82 -11.91 16 18 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 19 C -0.07 -3.99 5.47 84.86 0.46 -3.52 16 20 N -0.95 -58.45 10.47 21.65 0.23 -58.22 16 21 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 25 C -0.10 -1.34 2.90 -10.07 -0.03 -1.37 16 26 C -0.13 -2.39 6.06 31.69 0.19 -2.20 16 27 C -0.12 -1.86 6.91 31.91 0.22 -1.64 16 28 C -0.13 -1.58 6.83 31.67 0.22 -1.37 16 29 C -0.12 -1.05 5.95 31.32 0.19 -0.86 16 30 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.06 0.50 7.97 -2.38 -0.02 0.48 16 32 H 0.06 0.47 7.61 -2.39 -0.02 0.45 16 33 H 0.41 5.09 5.88 -92.71 -0.55 4.54 16 34 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.67 7.63 -2.39 -0.02 1.65 16 38 H 0.04 1.53 8.03 -2.39 -0.02 1.51 16 39 H 0.04 1.42 7.85 -2.39 -0.02 1.40 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 2.00 7.78 -2.39 -0.02 1.98 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H -0.01 -0.70 8.12 -2.39 -0.02 -0.72 16 45 H 0.04 2.01 6.72 -2.38 -0.02 2.00 16 46 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.11 0.98 7.58 -2.39 -0.02 0.96 16 48 H 0.04 1.14 5.67 -2.38 -0.01 1.13 16 49 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 53 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 54 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 55 H 0.07 0.50 4.82 -2.39 -0.01 0.49 16 Total: -1.00 -79.09 417.99 2.68 -76.41 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.30 Total: 15.02 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.66 Total: -1.81 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -4.27 Total: -108.15 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.04 Total: -30.53 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -79.09 2.68 -76.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267179026.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.680 kcal (2) G-P(sol) polarization free energy of solvation -79.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds