Wall clock time and date at job start Tue Mar 31 2020 22:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00061 * 2 1 4 4 H 1.08999 * 109.47118 * 34.67082 * 3 2 1 5 5 C 1.50695 * 109.47406 * 154.67576 * 3 2 1 6 6 O 1.21285 * 120.00210 * 14.07548 * 5 3 2 7 7 N 1.34780 * 119.99965 * 194.07626 * 5 3 2 8 8 C 1.46508 * 119.99767 * 185.31046 * 7 5 3 9 9 C 1.53000 * 109.46698 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46621 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46924 * 174.97171 * 10 9 8 12 12 H 1.09001 * 109.87367 * 303.77359 * 11 10 9 13 13 C 1.54325 * 109.88478 * 64.78883 * 11 10 9 14 14 C 1.55154 * 102.94229 * 141.60744 * 13 11 10 15 15 C 1.54908 * 101.58570 * 324.50135 * 14 13 11 16 16 N 1.47020 * 109.88263 * 182.75616 * 11 10 9 17 17 C 1.36945 * 125.64553 * 61.61184 * 16 11 10 18 18 H 1.07994 * 119.99954 * 7.40818 * 17 16 11 19 19 C 1.38812 * 119.99581 * 187.41226 * 17 16 11 20 20 N 1.31616 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99708 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47394 * 89.99637 * 21 19 17 23 23 H 1.48499 * 109.47084 * 210.00100 * 21 19 17 24 24 H 1.48500 * 109.47016 * 329.99444 * 21 19 17 25 25 C 1.53005 * 109.46786 * 274.67428 * 3 2 1 26 26 C 1.54261 * 110.03437 * 291.85567 * 25 3 2 27 27 C 1.54965 * 104.16412 * 217.13700 * 26 25 3 28 28 C 1.54892 * 102.77341 * 37.88570 * 27 26 25 29 29 C 1.53874 * 110.02986 * 174.63880 * 25 3 2 30 30 H 1.08998 * 109.47492 * 304.99762 * 1 2 3 31 31 H 1.09001 * 109.46944 * 64.99530 * 1 2 3 32 32 H 1.08998 * 109.47261 * 184.99330 * 1 2 3 33 33 H 0.97000 * 120.00203 * 5.31035 * 7 5 3 34 34 H 1.09001 * 109.47011 * 60.00207 * 8 7 5 35 35 H 1.08997 * 109.47000 * 299.99741 * 8 7 5 36 36 H 1.08997 * 109.47406 * 300.00204 * 9 8 7 37 37 H 1.09001 * 109.47151 * 60.00378 * 9 8 7 38 38 H 1.09004 * 109.47429 * 294.96795 * 10 9 8 39 39 H 1.08999 * 109.47322 * 54.97080 * 10 9 8 40 40 H 1.08994 * 110.72224 * 259.97594 * 13 11 10 41 41 H 1.09008 * 110.71738 * 23.25052 * 13 11 10 42 42 H 1.09000 * 110.99905 * 82.57551 * 14 13 11 43 43 H 1.09007 * 111.00626 * 206.38607 * 14 13 11 44 44 H 1.08993 * 110.36598 * 155.84246 * 15 14 13 45 45 H 1.08998 * 110.36548 * 278.16873 * 15 14 13 46 46 H 0.96997 * 120.00055 * 180.02562 * 20 19 17 47 47 H 1.09005 * 110.01601 * 53.24877 * 25 3 2 48 48 H 1.09011 * 110.48630 * 335.78451 * 26 25 3 49 49 H 1.08994 * 110.48779 * 98.42248 * 26 25 3 50 50 H 1.08998 * 110.71715 * 279.57574 * 27 26 25 51 51 H 1.08998 * 110.92857 * 156.29159 * 27 26 25 52 52 H 1.09005 * 110.48753 * 203.40423 * 28 27 26 53 53 H 1.08999 * 110.48924 * 80.76696 * 28 27 26 54 54 H 1.09001 * 110.03084 * 238.56963 * 29 25 3 55 55 H 1.08994 * 110.03428 * 359.97438 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3859 1.9811 0.5846 5 6 3.3877 1.2420 0.6077 6 8 3.9317 0.1697 0.7667 7 7 4.0153 2.3770 0.9746 8 6 5.3979 2.3265 1.4567 9 6 5.8689 3.7403 1.8033 10 6 7.3126 3.6875 2.3074 11 6 7.8257 5.1108 2.5350 12 1 7.7288 5.6908 1.6172 13 6 7.0224 5.7835 3.6681 14 6 8.1046 6.5973 4.4255 15 6 9.3353 5.6641 4.3070 16 7 9.2336 5.0733 2.9566 17 6 10.2742 4.5729 2.2202 18 1 10.1144 4.2704 1.1959 19 6 11.5342 4.4545 2.7906 20 7 11.7289 4.8236 4.0388 21 14 12.9534 3.7712 1.7864 22 1 13.6466 4.8835 1.0882 23 1 13.9099 3.0799 2.6878 24 1 12.4319 2.8067 0.7849 25 6 2.1102 1.8191 -1.4378 26 6 3.1492 0.9925 -2.2232 27 6 3.8450 2.0303 -3.1398 28 6 3.9351 3.2825 -2.2326 29 6 2.6094 3.2746 -1.4439 30 1 -0.3634 0.5894 0.8418 31 1 -0.3633 0.4344 -0.9314 32 1 -0.3634 -1.0237 0.0894 33 1 3.5516 3.2272 0.9195 34 1 6.0388 1.9107 0.6793 35 1 5.4500 1.6977 2.3455 36 1 5.8168 4.3688 0.9144 37 1 5.2281 4.1565 2.5806 38 1 7.3499 3.1335 3.2454 39 1 7.9382 3.1899 1.5664 40 1 6.2584 6.4446 3.2592 41 1 6.5758 5.0340 4.3216 42 1 8.2899 7.5526 3.9344 43 1 7.8241 6.7445 5.4685 44 1 10.2571 6.2383 4.3999 45 1 9.2948 4.8843 5.0675 46 1 12.6094 4.7412 4.4372 47 1 1.1372 1.7560 -1.9251 48 1 3.8708 0.5406 -1.5424 49 1 2.6547 0.2261 -2.8200 50 1 3.2373 2.2349 -4.0213 51 1 4.8394 1.6901 -3.4284 52 1 4.0144 4.1864 -2.8366 53 1 4.7836 3.2011 -1.5532 54 1 1.8790 3.9177 -1.9350 55 1 2.7799 3.6152 -0.4227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267179027.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:09 Heat of formation + Delta-G solvation = -96.143773 kcal Electronic energy + Delta-G solvation = -30763.980061 eV Core-core repulsion = 26799.993269 eV Total energy + Delta-G solvation = -3963.986792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.61144 -39.51713 -38.92708 -37.97806 -36.63016 -34.70112 -33.70744 -31.75726 -31.20125 -29.68623 -29.33939 -27.95087 -26.72925 -26.21383 -25.00354 -22.80808 -22.11741 -21.84783 -21.47493 -20.85519 -20.51715 -18.71994 -18.26222 -17.94354 -17.26196 -16.97471 -16.58907 -16.37160 -16.29075 -15.97078 -15.72762 -15.51161 -15.22651 -15.06391 -14.49852 -14.28211 -14.04266 -13.81245 -13.67993 -13.62972 -13.53239 -13.11213 -13.02135 -12.74501 -12.69209 -12.62692 -12.29608 -12.16240 -12.01387 -11.98196 -11.94169 -11.88103 -11.82771 -11.72804 -11.64803 -11.45827 -11.40361 -11.29386 -11.13672 -10.91995 -10.66967 -10.41921 -10.11220 -8.80837 -7.80265 -5.17055 1.44186 1.45677 1.53922 1.56281 1.86880 2.50338 2.97986 3.34622 3.52510 3.57888 3.68117 3.75027 3.83597 3.97330 4.01190 4.03966 4.17731 4.26345 4.30552 4.36538 4.43487 4.48218 4.50953 4.55031 4.62348 4.63220 4.70179 4.75391 4.80410 4.83265 4.84705 4.86146 4.88889 4.97937 5.00156 5.04670 5.05828 5.15185 5.23373 5.25512 5.29027 5.32936 5.36986 5.43003 5.49118 5.52021 5.53141 5.71392 5.71535 5.84086 6.07092 6.30640 6.56664 7.14164 7.22868 7.84550 8.50002 9.27789 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.002417 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.486902 B =11580.698968 C =12210.065731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.394 6.394 3 C 0.080 3.920 4 H 0.115 0.885 5 C 0.514 3.486 6 O -0.577 6.577 7 N -0.707 5.707 8 C 0.126 3.874 9 C -0.106 4.106 10 C -0.113 4.113 11 C 0.152 3.848 12 H 0.036 0.964 13 C -0.111 4.111 14 C -0.137 4.137 15 C 0.165 3.835 16 N -0.620 5.620 17 C -0.225 4.225 18 H 0.078 0.922 19 C -0.070 4.070 20 N -0.952 5.952 21 Si 0.970 3.030 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.273 1.273 25 C -0.102 4.102 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.128 4.128 29 C -0.117 4.117 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.416 0.584 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.047 0.953 45 H -0.015 1.015 46 H 0.244 0.756 47 H 0.107 0.893 48 H 0.039 0.961 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.051 0.949 52 H 0.080 0.920 53 H 0.051 0.949 54 H 0.097 0.903 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.499 0.602 -10.815 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.312 6.312 3 C 0.019 3.981 4 H 0.133 0.867 5 C 0.301 3.699 6 O -0.456 6.456 7 N -0.364 5.364 8 C 0.002 3.998 9 C -0.144 4.144 10 C -0.153 4.153 11 C 0.046 3.954 12 H 0.054 0.946 13 C -0.148 4.148 14 C -0.175 4.175 15 C 0.040 3.960 16 N -0.345 5.345 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.263 4.263 20 N -0.602 5.602 21 Si 0.799 3.201 22 H -0.212 1.212 23 H -0.224 1.224 24 H -0.198 1.198 25 C -0.121 4.121 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.166 4.166 29 C -0.155 4.155 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.256 0.744 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.003 0.997 46 H 0.054 0.946 47 H 0.125 0.875 48 H 0.058 0.942 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.070 0.930 52 H 0.098 0.902 53 H 0.070 0.930 54 H 0.115 0.885 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.787 -0.364 -10.692 29.775 hybrid contribution 1.396 -0.510 -0.117 1.491 sum -26.391 -0.874 -10.808 28.532 Atomic orbital electron populations 1.23100 0.78662 1.04039 1.01674 1.88027 1.21862 1.26215 1.95133 1.22267 0.91525 0.86841 0.97454 0.86725 1.20878 0.88275 0.83744 0.77018 1.90711 1.68519 1.30850 1.55501 1.46097 1.14560 1.09721 1.66032 1.21238 0.81710 0.98507 0.98331 1.21628 0.95529 0.94572 1.02711 1.21830 0.95341 0.98473 0.99648 1.21210 0.83648 0.94047 0.96475 0.94579 1.22591 0.96885 0.98902 0.96453 1.22874 0.96039 0.98092 1.00541 1.21459 0.96360 0.92992 0.85238 1.44962 1.02612 1.70541 1.16339 1.19331 0.88259 1.33338 0.94498 0.90463 1.25578 1.00368 1.02982 0.97342 1.70140 1.21598 1.54786 1.13629 0.85187 0.79367 0.78008 0.77500 1.21157 1.22371 1.19764 1.22257 1.01180 0.95800 0.92892 1.22423 0.97603 0.97949 0.98170 1.22515 1.00038 0.95278 0.98348 1.22382 0.97642 0.98218 0.98309 1.22319 0.97505 0.94416 1.01239 0.92297 0.91969 0.88936 0.74390 0.93566 0.93254 0.89719 0.89035 0.94167 0.94624 0.88340 0.91076 0.91863 0.90177 0.93513 0.99715 0.94623 0.87477 0.94249 0.91717 0.89939 0.92991 0.90164 0.92997 0.88480 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.83 113.37 1.23 1.47 16 2 O -0.39 -8.40 9.79 -130.33 -1.28 -9.67 16 3 C 0.08 1.35 2.22 29.85 0.07 1.42 16 4 H 0.12 1.11 7.78 -2.39 -0.02 1.09 16 5 C 0.51 12.74 5.50 87.66 0.48 13.23 16 6 O -0.58 -21.01 15.85 15.60 0.25 -20.77 16 7 N -0.71 -13.77 4.95 -463.04 -2.29 -16.06 16 8 C 0.13 3.17 5.68 86.38 0.49 3.66 16 9 C -0.11 -2.39 5.07 30.59 0.16 -2.24 16 10 C -0.11 -3.86 4.69 30.60 0.14 -3.71 16 11 C 0.15 5.75 3.18 45.34 0.14 5.89 16 12 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 13 C -0.11 -3.30 5.59 31.78 0.18 -3.12 16 14 C -0.14 -4.86 7.08 31.98 0.23 -4.63 16 15 C 0.16 8.17 5.63 86.79 0.49 8.66 16 16 N -0.62 -31.44 3.14 -667.45 -2.09 -33.53 16 17 C -0.22 -12.65 9.78 84.03 0.82 -11.83 16 18 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 19 C -0.07 -4.08 5.48 84.86 0.47 -3.61 16 20 N -0.95 -58.35 10.31 21.65 0.22 -58.12 16 21 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 22 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 25 C -0.10 -1.35 2.89 -10.07 -0.03 -1.38 16 26 C -0.12 -2.40 6.04 31.69 0.19 -2.21 16 27 C -0.12 -2.02 6.91 31.91 0.22 -1.80 16 28 C -0.13 -1.80 6.83 31.67 0.22 -1.58 16 29 C -0.12 -1.12 5.87 31.32 0.18 -0.93 16 30 H 0.06 0.47 7.97 -2.39 -0.02 0.45 16 31 H 0.06 0.45 7.54 -2.39 -0.02 0.43 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.42 4.92 5.98 -92.71 -0.55 4.36 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.65 7.53 -2.39 -0.02 1.64 16 38 H 0.04 1.51 8.08 -2.38 -0.02 1.49 16 39 H 0.03 1.40 7.91 -2.39 -0.02 1.38 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 2.01 7.77 -2.38 -0.02 1.99 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 44 H 0.05 2.66 6.40 -2.39 -0.02 2.64 16 45 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 46 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 47 H 0.11 0.99 7.51 -2.38 -0.02 0.97 16 48 H 0.04 1.08 5.87 -2.38 -0.01 1.06 16 49 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 53 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 54 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 55 H 0.07 0.55 4.75 -2.39 -0.01 0.54 16 Total: -1.00 -79.04 417.57 2.80 -76.24 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.29 Total: 15.58 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 5.67 Total: -2.73 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -4.16 Total: -107.72 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.03 Total: -30.44 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -79.04 2.80 -76.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267179027.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.903 kcal (2) G-P(sol) polarization free energy of solvation -79.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds