Wall clock time and date at job start Tue Mar 31 2020 22:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 119.99941 * 2 1 4 4 H 1.08000 * 120.00238 * 201.07072 * 3 2 1 5 5 C 1.38808 * 120.00117 * 21.07380 * 3 2 1 6 6 N 1.31622 * 120.00163 * 13.21160 * 5 3 2 7 7 Si 1.86796 * 120.00207 * 193.21665 * 5 3 2 8 8 H 1.48503 * 109.47200 * 59.99877 * 7 5 3 9 9 H 1.48503 * 109.47651 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47311 * 299.99706 * 7 5 3 11 11 C 1.46502 * 120.00245 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46950 * 89.99828 * 11 2 1 13 13 C 1.53045 * 109.45764 * 175.00213 * 12 11 2 14 14 C 1.53195 * 109.31087 * 181.37397 * 13 12 11 15 15 N 1.46928 * 108.77514 * 305.36367 * 14 13 12 16 16 C 1.34773 * 120.62960 * 233.59185 * 15 14 13 17 17 O 1.21282 * 120.00304 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.99993 * 180.02562 * 16 15 14 19 19 C 1.53002 * 109.47203 * 179.97438 * 18 16 15 20 20 C 1.52990 * 109.47011 * 179.97438 * 19 18 16 21 21 H 1.08999 * 109.48473 * 305.02238 * 20 19 18 22 22 C 1.53097 * 109.48134 * 185.00085 * 20 19 18 23 23 C 1.53181 * 109.21629 * 182.37536 * 22 20 19 24 24 C 1.53317 * 108.96182 * 56.95315 * 23 22 20 25 25 C 1.53094 * 109.19495 * 303.05333 * 24 23 22 26 26 O 1.42901 * 109.41218 * 57.61382 * 25 24 23 27 27 C 1.46919 * 118.73690 * 53.86105 * 15 14 13 28 28 C 1.53039 * 109.45292 * 295.06183 * 12 11 2 29 29 H 1.08990 * 109.46962 * 275.21738 * 1 2 3 30 30 H 1.09002 * 109.46871 * 35.21637 * 1 2 3 31 31 H 1.09005 * 109.46695 * 155.21320 * 1 2 3 32 32 H 0.96999 * 120.00172 * 180.02562 * 6 5 3 33 33 H 1.08997 * 109.46975 * 330.00271 * 11 2 1 34 34 H 1.08999 * 109.47035 * 210.00137 * 11 2 1 35 35 H 1.08998 * 109.46314 * 55.03317 * 12 11 2 36 36 H 1.09006 * 109.49648 * 61.42227 * 13 12 11 37 37 H 1.08998 * 109.49670 * 301.32530 * 13 12 11 38 38 H 1.09006 * 109.58539 * 185.57991 * 14 13 12 39 39 H 1.08994 * 109.58880 * 65.14968 * 14 13 12 40 40 H 1.09003 * 109.46984 * 59.99188 * 18 16 15 41 41 H 1.09003 * 109.46708 * 299.99324 * 18 16 15 42 42 H 1.09000 * 109.47044 * 59.99662 * 19 18 16 43 43 H 1.09000 * 109.47150 * 300.00024 * 19 18 16 44 44 H 1.09001 * 109.51929 * 302.31039 * 22 20 19 45 45 H 1.09000 * 109.51956 * 62.43812 * 22 20 19 46 46 H 1.08996 * 109.54354 * 176.87436 * 23 22 20 47 47 H 1.08999 * 109.54492 * 297.14535 * 23 22 20 48 48 H 1.09001 * 109.50183 * 183.14564 * 24 23 22 49 49 H 1.08996 * 109.56231 * 63.00502 * 24 23 22 50 50 H 1.09002 * 109.48214 * 297.62631 * 25 24 23 51 51 H 1.08997 * 109.47779 * 177.59695 * 25 24 23 52 52 H 1.08997 * 109.58947 * 65.92892 * 27 15 14 53 53 H 1.09008 * 109.58634 * 186.35510 * 27 15 14 54 54 H 1.09000 * 109.49653 * 298.57656 * 28 12 11 55 55 H 1.09004 * 109.49668 * 58.67126 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1755 1.2172 -0.3363 5 6 1.5253 2.3478 0.4322 6 7 0.3815 2.2785 1.0798 7 14 2.3082 4.0099 0.0948 8 1 2.4491 4.2023 -1.3709 9 1 1.4494 5.0845 0.6543 10 1 3.6483 4.0645 0.7324 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 6 3.3241 -2.9677 -1.4454 14 6 3.6057 -3.3865 -2.8918 15 7 2.3262 -3.5377 -3.5980 16 6 2.0319 -4.6807 -4.2487 17 8 2.8268 -5.5967 -4.2554 18 6 0.7155 -4.8202 -4.9689 19 6 0.6340 -6.2027 -5.6193 20 6 -0.7027 -6.3446 -6.3500 21 1 -1.5192 -6.1412 -5.6570 22 6 -0.8382 -7.7689 -6.8946 23 6 -2.1508 -7.8874 -7.6754 24 6 -2.1648 -6.8339 -8.7891 25 6 -1.9781 -5.4456 -8.1712 26 8 -0.7545 -5.4146 -7.4338 27 6 1.3763 -2.4170 -3.5864 28 6 1.1173 -2.0111 -2.1276 29 1 -0.3633 0.0934 1.0233 30 1 -0.3633 0.8396 -0.5926 31 1 -0.3633 -0.9331 -0.4309 32 1 -0.0551 3.0905 1.3815 33 1 1.6085 -2.0286 0.5129 34 1 3.1500 -1.1386 0.5133 35 1 2.9647 -0.9123 -1.9817 36 1 2.8019 -3.7730 -0.9285 37 1 4.2655 -2.7590 -0.9372 38 1 4.1418 -4.3357 -2.8996 39 1 4.2062 -2.6213 -3.3835 40 1 0.6391 -4.0519 -5.7383 41 1 -0.1020 -4.7044 -4.2573 42 1 0.7106 -6.9712 -4.8501 43 1 1.4515 -6.3182 -6.3310 44 1 0.0001 -7.9871 -7.5563 45 1 -0.8422 -8.4769 -6.0659 46 1 -2.2266 -8.8831 -8.1123 47 1 -2.9917 -7.7179 -7.0028 48 1 -3.1187 -6.8731 -9.3152 49 1 -1.3539 -7.0327 -9.4898 50 1 -2.8114 -5.2304 -7.5023 51 1 -1.9446 -4.6970 -8.9628 52 1 1.7987 -1.5743 -4.1336 53 1 0.4407 -2.7261 -4.0527 54 1 0.6159 -2.8253 -1.6044 55 1 0.4879 -1.1214 -2.1051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267752513.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:40 Heat of formation + Delta-G solvation = -101.427615 kcal Electronic energy + Delta-G solvation = -30349.503407 eV Core-core repulsion = 26385.287490 eV Total energy + Delta-G solvation = -3964.215917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.29285 -40.29072 -39.01590 -37.10168 -35.00751 -34.50487 -34.47039 -32.73220 -31.92037 -30.90384 -28.69249 -27.79674 -26.76034 -25.14377 -24.63569 -24.00683 -22.78845 -22.20492 -21.26531 -21.08856 -19.75730 -18.63098 -18.13444 -17.49746 -17.02082 -16.83769 -16.58543 -16.44291 -15.64431 -15.54808 -15.50961 -15.42607 -15.12993 -14.95058 -14.71431 -14.55285 -14.38543 -14.12611 -13.66379 -13.61870 -13.56413 -13.35771 -12.99830 -12.84122 -12.77162 -12.67746 -12.50352 -12.35966 -12.18881 -12.12330 -12.04285 -11.95761 -11.85733 -11.83262 -11.81508 -11.55293 -11.30175 -11.20248 -11.14659 -10.73678 -10.56245 -10.30933 -9.63476 -8.69984 -7.77368 -5.24003 1.48126 1.49740 1.56194 1.64639 2.05365 2.54086 2.87715 3.34500 3.48435 3.69522 3.76486 3.87669 3.93074 3.98256 4.03101 4.06923 4.16158 4.17049 4.20644 4.32135 4.37435 4.39135 4.44964 4.52251 4.61670 4.62865 4.69379 4.76960 4.80967 4.84591 4.87164 4.89501 4.92510 4.95329 5.01096 5.04707 5.10554 5.11793 5.15224 5.16244 5.20303 5.20616 5.29118 5.34982 5.42461 5.43669 5.63584 5.65379 5.68468 5.79348 6.36822 6.37222 6.45661 7.18295 7.20957 7.94902 8.37186 9.24926 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.002130 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.358876 B =13143.105106 C =14037.866682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.616 5.616 3 C -0.253 4.253 4 H 0.069 0.931 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.965 3.035 8 H -0.279 1.279 9 H -0.297 1.297 10 H -0.278 1.278 11 C 0.155 3.845 12 C -0.096 4.096 13 C -0.115 4.115 14 C 0.114 3.886 15 N -0.609 5.609 16 C 0.510 3.490 17 O -0.588 6.588 18 C -0.130 4.130 19 C -0.090 4.090 20 C 0.092 3.908 21 H 0.070 0.930 22 C -0.151 4.151 23 C -0.122 4.122 24 C -0.156 4.156 25 C 0.054 3.946 26 O -0.399 6.399 27 C 0.112 3.888 28 C -0.118 4.118 29 H -0.006 1.006 30 H 0.015 0.985 31 H 0.038 0.962 32 H 0.246 0.754 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.099 0.901 52 H 0.071 0.929 53 H 0.107 0.893 54 H 0.062 0.938 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 -19.441 -18.142 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.339 5.339 3 C -0.383 4.383 4 H 0.087 0.913 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.794 3.206 8 H -0.205 1.205 9 H -0.223 1.223 10 H -0.204 1.204 11 C 0.029 3.971 12 C -0.117 4.117 13 C -0.154 4.154 14 C -0.009 4.009 15 N -0.341 5.341 16 C 0.301 3.699 17 O -0.469 6.469 18 C -0.169 4.169 19 C -0.128 4.128 20 C 0.034 3.966 21 H 0.088 0.912 22 C -0.189 4.189 23 C -0.160 4.160 24 C -0.193 4.193 25 C -0.022 4.022 26 O -0.319 6.319 27 C -0.010 4.010 28 C -0.156 4.156 29 H 0.013 0.987 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.105 0.895 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.117 0.883 52 H 0.089 0.911 53 H 0.126 0.874 54 H 0.081 0.919 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.927 -19.659 -18.108 27.178 hybrid contribution 0.222 1.160 0.327 1.225 sum -4.706 -18.499 -17.781 26.087 Atomic orbital electron populations 1.20591 0.82760 0.96100 0.97166 1.44108 1.02077 1.01513 1.86233 1.19449 0.97228 0.86474 1.35174 0.91333 1.25712 0.98615 1.01576 0.99316 1.70244 1.19668 1.27088 1.41895 0.85375 0.77517 0.79886 0.77869 1.20488 1.22334 1.20411 1.20904 0.95135 0.86600 0.94434 1.21603 0.95980 0.96206 0.97948 1.21817 1.00555 0.97206 0.95825 1.21554 0.85241 1.01902 0.92170 1.48281 1.19077 1.15123 1.51642 1.21266 0.89485 0.80946 0.78213 1.90642 1.52319 1.40547 1.63424 1.21669 0.94069 1.00473 1.00735 1.21298 0.96330 0.96133 0.99007 1.22149 0.97357 0.88924 0.88121 0.91207 1.22198 0.98750 0.96904 1.01024 1.21633 0.97116 0.99682 0.97557 1.22212 1.03101 0.95475 0.98556 1.22723 0.86430 0.97510 0.95574 1.87918 1.38655 1.59760 1.45525 1.21974 0.93373 0.88462 0.97225 1.21954 0.97531 1.01167 0.94936 0.98731 0.96594 0.94317 0.94480 0.94013 0.94399 0.92759 0.91950 0.90237 0.90101 0.91242 0.87502 0.87074 0.90068 0.92316 0.92008 0.90042 0.90747 0.91108 0.89481 0.91919 0.92373 0.88253 0.91118 0.87440 0.91910 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.52 7.86 127.77 1.00 9.53 16 2 N -0.62 -29.77 2.75 -726.94 -2.00 -31.77 16 3 C -0.25 -13.60 9.67 84.03 0.81 -12.78 16 4 H 0.07 3.59 7.86 -2.91 -0.02 3.56 16 5 C -0.06 -3.21 5.10 84.86 0.43 -2.78 16 6 N -0.94 -55.55 10.61 21.65 0.23 -55.32 16 7 Si 0.96 44.89 29.57 68.60 2.03 46.92 16 8 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 9 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 C 0.16 5.99 5.14 86.38 0.44 6.43 16 12 C -0.10 -3.00 2.36 -10.76 -0.03 -3.02 16 13 C -0.12 -3.00 5.36 30.67 0.16 -2.83 16 14 C 0.11 2.89 6.43 86.36 0.56 3.44 16 15 N -0.61 -14.99 2.97 -818.07 -2.43 -17.41 16 16 C 0.51 13.09 7.70 87.66 0.67 13.76 16 17 O -0.59 -19.17 15.40 -3.04 -0.05 -19.22 16 18 C -0.13 -2.41 3.94 29.85 0.12 -2.29 16 19 C -0.09 -1.67 4.21 30.59 0.13 -1.54 16 20 C 0.09 1.40 2.64 30.62 0.08 1.49 16 21 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 22 C -0.15 -1.99 5.41 30.69 0.17 -1.82 16 23 C -0.12 -1.27 6.04 30.76 0.19 -1.09 16 24 C -0.16 -1.63 6.14 30.73 0.19 -1.45 16 25 C 0.05 0.67 6.84 72.01 0.49 1.16 16 26 O -0.40 -7.07 9.94 -148.98 -1.48 -8.55 16 27 C 0.11 2.49 6.37 86.51 0.55 3.04 16 28 C -0.12 -3.25 4.42 30.82 0.14 -3.11 16 29 H -0.01 -0.30 7.38 -2.39 -0.02 -0.32 16 30 H 0.02 0.81 7.22 -2.39 -0.02 0.79 16 31 H 0.04 1.52 6.20 -2.38 -0.01 1.50 16 32 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.04 1.53 8.07 -2.39 -0.02 1.51 16 34 H 0.04 1.50 8.04 -2.39 -0.02 1.48 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.08 2.18 7.01 -2.38 -0.02 2.16 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 1.88 7.62 -2.39 -0.02 1.86 16 41 H 0.11 1.64 7.70 -2.39 -0.02 1.63 16 42 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 43 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 46 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 53 H 0.11 1.84 5.93 -2.38 -0.01 1.82 16 54 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 55 H 0.07 2.24 5.87 -2.38 -0.01 2.22 16 Total: -1.00 -67.65 413.74 3.24 -64.41 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.83 Total: 14.82 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.11 Total: 6.13 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -4.20 Total: -104.50 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -1.53 Total: -27.77 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.65 3.24 -64.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267752513.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.020 kcal (2) G-P(sol) polarization free energy of solvation -67.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds