Wall clock time and date at job start Tue Mar 31 2020 22:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99903 * 2 1 4 4 H 1.09008 * 109.47106 * 29.99557 * 3 2 1 5 5 C 1.50701 * 109.46747 * 269.99690 * 3 2 1 6 6 O 1.21276 * 120.00166 * 354.99932 * 5 3 2 7 7 N 1.34780 * 119.99585 * 174.99887 * 5 3 2 8 8 C 1.46926 * 120.62730 * 180.02562 * 7 5 3 9 9 C 1.53191 * 108.89109 * 126.46248 * 8 7 5 10 10 C 1.53044 * 109.31440 * 54.56430 * 9 8 7 11 11 C 1.52997 * 109.45778 * 178.62736 * 10 9 8 12 12 C 1.53006 * 109.46996 * 184.99936 * 11 10 9 13 13 N 1.46498 * 109.47227 * 179.97438 * 12 11 10 14 14 C 1.36942 * 119.99762 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00000 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99645 * 180.02562 * 14 13 12 17 17 N 1.31616 * 119.99882 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00148 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47006 * 89.99953 * 18 16 14 20 20 H 1.48501 * 109.47157 * 210.00009 * 18 16 14 21 21 H 1.48497 * 109.47163 * 330.00030 * 18 16 14 22 22 C 1.53040 * 109.53662 * 298.63203 * 10 9 8 23 23 C 1.46957 * 120.65462 * 359.81587 * 7 5 3 24 24 C 1.52999 * 109.47096 * 149.99444 * 3 2 1 25 25 C 1.54263 * 110.03051 * 57.90919 * 24 3 2 26 26 C 1.54960 * 104.16293 * 217.13315 * 25 24 3 27 27 C 1.54890 * 102.77497 * 37.88499 * 26 25 24 28 28 C 1.53871 * 110.03478 * 300.68898 * 24 3 2 29 29 H 1.09002 * 109.47115 * 300.00339 * 1 2 3 30 30 H 1.08992 * 109.46777 * 60.00697 * 1 2 3 31 31 H 1.09000 * 109.46839 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.58861 * 6.60251 * 8 7 5 33 33 H 1.08996 * 109.58519 * 246.32142 * 8 7 5 34 34 H 1.09003 * 109.49294 * 174.51508 * 9 8 7 35 35 H 1.09001 * 109.49969 * 294.57596 * 9 8 7 36 36 H 1.08994 * 109.45986 * 58.65006 * 10 9 8 37 37 H 1.08996 * 109.47233 * 304.99548 * 11 10 9 38 38 H 1.09000 * 109.47322 * 65.00071 * 11 10 9 39 39 H 1.09004 * 109.46670 * 300.00154 * 12 11 10 40 40 H 1.09000 * 109.46980 * 59.99365 * 12 11 10 41 41 H 0.96997 * 119.99901 * 359.97438 * 13 12 11 42 42 H 0.96996 * 120.00371 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.49643 * 181.31582 * 22 10 9 44 44 H 1.08996 * 109.49892 * 301.41776 * 22 10 9 45 45 H 1.09001 * 109.46843 * 113.75468 * 23 7 5 46 46 H 1.08997 * 109.71602 * 353.46961 * 23 7 5 47 47 H 1.09001 * 110.01604 * 179.29600 * 24 3 2 48 48 H 1.09003 * 110.48693 * 335.78158 * 25 24 3 49 49 H 1.08999 * 110.48903 * 98.42243 * 25 24 3 50 50 H 1.09004 * 110.72208 * 279.57639 * 26 25 24 51 51 H 1.09001 * 110.92829 * 156.29451 * 26 25 24 52 52 H 1.08998 * 110.49005 * 203.40408 * 27 26 25 53 53 H 1.09001 * 110.59828 * 80.82196 * 27 26 25 54 54 H 1.08996 * 110.03269 * 238.56412 * 28 24 3 55 55 H 1.08997 * 110.03401 * 359.95311 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9995 0.5138 5 6 2.2146 1.7643 -1.4209 6 8 1.9793 1.0105 -2.3413 7 7 2.6589 3.0124 -1.6686 8 6 2.8625 3.4743 -3.0484 9 6 2.0907 4.7818 -3.2527 10 6 2.5135 5.7915 -2.1832 11 6 1.7698 7.1101 -2.4049 12 6 2.2828 8.1576 -1.4146 13 7 1.5712 9.4204 -1.6272 14 6 1.8636 10.5101 -0.8512 15 1 2.6191 10.4388 -0.0828 16 6 1.1890 11.7065 -1.0523 17 7 1.4697 12.7538 -0.3062 18 14 -0.1173 11.8301 -2.3819 19 1 -1.4396 11.4674 -1.8119 20 1 -0.1662 13.2209 -2.9000 21 1 0.2156 10.9003 -3.4908 22 6 2.1726 5.2411 -0.7965 23 6 2.9447 3.9390 -0.5644 24 6 3.3589 1.2633 0.7214 25 6 4.2934 0.2455 0.0355 26 6 5.0702 -0.4058 1.2076 27 6 3.9916 -0.5164 2.3138 28 6 3.1672 0.7796 2.1694 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.4946 2.7203 -3.7443 33 1 3.9246 3.6457 -3.2234 34 1 2.3125 5.1844 -4.2411 35 1 1.0210 4.5896 -3.1698 36 1 3.5875 5.9644 -2.2513 37 1 1.9425 7.4578 -3.4233 38 1 0.7021 6.9556 -2.2497 39 1 2.1102 7.8098 -0.3960 40 1 3.3506 8.3120 -1.5697 41 1 0.8929 9.4845 -2.3176 42 1 0.9985 13.5899 -0.4469 43 1 2.4526 5.9707 -0.0366 44 1 1.1022 5.0447 -0.7361 45 1 4.0139 4.1490 -0.5339 46 1 2.6330 3.4929 0.3800 47 1 3.8161 2.2528 0.7157 48 1 3.7123 -0.5050 -0.5005 49 1 4.9794 0.7536 -0.6421 50 1 5.8902 0.2357 1.5305 51 1 5.4403 -1.3924 0.9289 52 1 4.4578 -0.5643 3.2978 53 1 3.3610 -1.3900 2.1486 54 1 3.5323 1.5338 2.8665 55 1 2.1134 0.5756 2.3586 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267919360.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:26 Heat of formation + Delta-G solvation = -107.248664 kcal Electronic energy + Delta-G solvation = -30908.938446 eV Core-core repulsion = 26944.470109 eV Total energy + Delta-G solvation = -3964.468337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.80359 -39.75799 -38.69242 -37.69731 -36.96325 -35.10502 -33.45207 -32.58683 -31.33664 -30.15752 -29.56350 -27.63688 -27.14562 -25.88822 -24.36931 -24.13777 -22.58729 -21.68615 -21.45007 -20.73239 -20.18699 -19.59753 -18.32366 -17.84916 -17.11355 -16.74965 -16.53286 -16.43861 -15.93440 -15.86149 -15.73330 -15.51430 -15.14433 -14.98568 -14.76491 -14.54104 -14.47858 -14.14571 -14.07228 -13.98325 -13.65663 -13.38084 -13.19213 -12.93009 -12.56308 -12.56091 -12.37092 -12.31034 -12.14437 -12.06455 -11.94327 -11.89218 -11.84093 -11.76255 -11.67391 -11.59195 -11.50200 -11.33938 -11.22088 -11.14950 -10.90979 -10.24793 -9.68017 -9.27508 -8.02913 -5.35992 1.37546 1.40724 1.48316 1.50732 1.88075 2.48235 2.73836 3.28665 3.33056 3.54095 3.61969 3.66590 3.76112 3.80706 3.89757 4.01482 4.03269 4.13293 4.28981 4.31896 4.36479 4.43487 4.46173 4.48891 4.56366 4.61248 4.62606 4.65349 4.70055 4.75324 4.77874 4.83684 4.84192 4.89681 4.90462 4.96922 5.00592 5.03957 5.08358 5.11312 5.20141 5.27475 5.28307 5.33717 5.38131 5.45519 5.53672 5.54938 5.57764 5.76631 6.00426 6.21790 6.36436 7.08623 7.10835 7.86299 8.03899 9.18607 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.002228 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.204312 B =12564.224582 C =13062.398328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.369 6.369 3 C 0.080 3.920 4 H 0.104 0.896 5 C 0.491 3.509 6 O -0.576 6.576 7 N -0.604 5.604 8 C 0.112 3.888 9 C -0.120 4.120 10 C -0.075 4.075 11 C -0.113 4.113 12 C 0.152 3.848 13 N -0.764 5.764 14 C -0.234 4.234 15 H 0.058 0.942 16 C -0.067 4.067 17 N -0.984 5.984 18 Si 0.956 3.044 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.252 1.252 22 C -0.132 4.132 23 C 0.100 3.900 24 C -0.090 4.090 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.112 4.112 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.022 0.978 41 H 0.364 0.636 42 H 0.258 0.742 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.051 0.949 49 H 0.056 0.944 50 H 0.076 0.924 51 H 0.063 0.937 52 H 0.075 0.925 53 H 0.056 0.944 54 H 0.083 0.917 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 -29.930 2.361 30.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.286 6.286 3 C 0.019 3.981 4 H 0.121 0.879 5 C 0.280 3.720 6 O -0.456 6.456 7 N -0.338 5.338 8 C -0.011 4.011 9 C -0.158 4.158 10 C -0.094 4.094 11 C -0.151 4.151 12 C 0.027 3.973 13 N -0.409 5.409 14 C -0.365 4.365 15 H 0.076 0.924 16 C -0.258 4.258 17 N -0.635 5.635 18 Si 0.783 3.217 19 H -0.204 1.204 20 H -0.223 1.223 21 H -0.177 1.177 22 C -0.170 4.170 23 C -0.021 4.021 24 C -0.109 4.109 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.157 4.157 28 C -0.150 4.150 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.040 0.960 41 H 0.197 0.803 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.123 0.877 47 H 0.128 0.872 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.095 0.905 51 H 0.082 0.918 52 H 0.094 0.906 53 H 0.075 0.925 54 H 0.102 0.898 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.725 -30.421 2.050 30.717 hybrid contribution -1.147 0.969 -0.970 1.788 sum 2.578 -29.452 1.080 29.585 Atomic orbital electron populations 1.22983 0.79915 1.04013 1.00213 1.87966 1.20829 1.25566 1.94283 1.22211 0.98201 0.86710 0.90968 0.87857 1.21821 0.76043 0.81353 0.92791 1.90661 1.52584 1.54729 1.47618 1.48273 1.65021 1.12330 1.08184 1.21597 1.00803 0.95935 0.82737 1.21885 0.99922 0.94176 0.99794 1.21008 1.00629 0.92833 0.94950 1.21698 1.00096 0.94315 0.99010 1.20897 0.94561 0.84252 0.97601 1.42826 1.46859 1.09443 1.41805 1.19072 1.16511 0.89637 1.11313 0.92404 1.25542 1.02741 0.95502 1.02053 1.69881 1.46835 1.02540 1.44231 0.85390 0.79428 0.76918 0.79940 1.20415 1.22280 1.17687 1.22039 1.00631 0.96727 0.97617 1.22166 1.01363 0.89185 0.89427 1.22174 0.91456 1.01588 0.95643 1.22314 0.97384 0.97963 0.97872 1.22479 0.97843 1.00590 0.94874 1.22299 0.96928 0.97639 0.98882 1.22121 1.00934 0.97849 0.94049 0.91823 0.95363 0.88251 0.90896 0.90022 0.89697 0.92534 0.89926 0.91886 0.92173 0.94933 0.96001 0.80269 0.93348 0.89581 0.91959 0.89099 0.87689 0.87187 0.92995 0.92505 0.90508 0.91846 0.90625 0.92470 0.89824 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.81 113.37 1.23 1.62 16 2 O -0.37 -7.49 8.34 -129.99 -1.08 -8.57 16 3 C 0.08 1.37 1.22 29.85 0.04 1.40 16 4 H 0.10 1.34 7.07 -2.38 -0.02 1.32 16 5 C 0.49 11.00 6.45 87.66 0.57 11.57 16 6 O -0.58 -17.96 15.92 15.97 0.25 -17.71 16 7 N -0.60 -10.98 2.98 -818.91 -2.44 -13.42 16 8 C 0.11 2.06 6.43 86.36 0.56 2.62 16 9 C -0.12 -2.14 5.36 30.67 0.16 -1.98 16 10 C -0.08 -1.43 2.15 -10.77 -0.02 -1.46 16 11 C -0.11 -2.93 4.80 30.60 0.15 -2.78 16 12 C 0.15 5.33 6.02 86.38 0.52 5.85 16 13 N -0.76 -35.09 5.41 -343.44 -1.86 -36.94 16 14 C -0.23 -13.30 10.47 84.03 0.88 -12.42 16 15 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 16 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 17 N -0.98 -62.94 13.97 21.65 0.30 -62.63 16 18 Si 0.96 45.24 27.74 68.60 1.90 47.15 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 21 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 22 C -0.13 -2.23 5.15 30.66 0.16 -2.07 16 23 C 0.10 1.32 4.95 86.34 0.43 1.75 16 24 C -0.09 -1.21 2.38 -10.07 -0.02 -1.23 16 25 C -0.12 -1.96 5.65 31.69 0.18 -1.78 16 26 C -0.12 -1.55 6.91 31.91 0.22 -1.33 16 27 C -0.12 -1.42 6.83 31.67 0.22 -1.20 16 28 C -0.11 -1.23 6.22 31.32 0.19 -1.04 16 29 H 0.06 0.71 8.09 -2.39 -0.02 0.69 16 30 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.63 7.01 -2.39 -0.02 1.61 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.03 1.13 6.53 -2.38 -0.02 1.11 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.36 16.01 5.53 -92.71 -0.51 15.50 16 42 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 43 H 0.09 1.52 6.50 -2.39 -0.02 1.51 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.11 1.01 4.70 -2.39 -0.01 1.00 16 47 H 0.11 1.12 5.48 -2.39 -0.01 1.10 16 48 H 0.05 1.17 7.15 -2.39 -0.02 1.15 16 49 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 55 H 0.07 0.77 7.40 -2.39 -0.02 0.76 16 Total: -1.00 -75.13 412.62 3.27 -71.86 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.28 Total: 26.23 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 5.91 Total: -5.95 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -4.00 Total: -113.00 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.83 Total: -26.28 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.15 kcal Total: -75.13 3.27 -71.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267919360.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.389 kcal (2) G-P(sol) polarization free energy of solvation -75.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds