Wall clock time and date at job start Tue Mar 31 2020 22:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99941 * 2 1 4 4 H 1.08996 * 109.47160 * 329.71901 * 3 2 1 5 5 C 1.50709 * 109.46879 * 89.71712 * 3 2 1 6 6 O 1.21281 * 119.99947 * 4.99867 * 5 3 2 7 7 N 1.34769 * 119.99741 * 184.99776 * 5 3 2 8 8 C 1.46929 * 120.63303 * 359.72313 * 7 5 3 9 9 C 1.53627 * 108.54153 * 126.36657 * 8 7 5 10 10 C 1.53032 * 109.24535 * 54.85667 * 9 8 7 11 11 C 1.52996 * 109.45185 * 178.49648 * 10 9 8 12 12 C 1.53003 * 109.47133 * 295.05985 * 11 10 9 13 13 N 1.46500 * 109.47288 * 179.97438 * 12 11 10 14 14 C 1.36933 * 119.99779 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00591 * 0.02562 * 14 13 12 16 16 C 1.38819 * 119.99717 * 180.02562 * 14 13 12 17 17 N 1.31607 * 119.99987 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99794 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47242 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46804 * 119.99965 * 18 16 14 21 21 H 1.48501 * 109.46842 * 240.00211 * 18 16 14 22 22 C 1.53043 * 109.53895 * 298.51227 * 10 9 8 23 23 C 1.46933 * 120.62979 * 179.97438 * 7 5 3 24 24 C 1.52995 * 109.47162 * 209.71635 * 3 2 1 25 25 C 1.53873 * 110.03422 * 64.98399 * 24 3 2 26 26 C 1.54262 * 106.60143 * 240.71736 * 25 24 3 27 27 C 1.54891 * 104.19524 * 336.38750 * 26 25 24 28 28 C 1.54271 * 110.03176 * 307.81805 * 24 3 2 29 29 H 1.08991 * 109.47340 * 64.76822 * 1 2 3 30 30 H 1.09000 * 109.46851 * 184.77162 * 1 2 3 31 31 H 1.09002 * 109.47169 * 304.76444 * 1 2 3 32 32 H 1.08994 * 109.58617 * 246.20016 * 8 7 5 33 33 H 1.08995 * 109.58401 * 6.62439 * 8 7 5 34 34 H 1.08997 * 109.63365 * 294.85982 * 9 8 7 35 35 H 1.09001 * 109.43014 * 174.72827 * 9 8 7 36 36 H 1.09007 * 109.45878 * 58.52766 * 10 9 8 37 37 H 1.08996 * 109.47548 * 55.05971 * 11 10 9 38 38 H 1.09006 * 109.47440 * 175.06321 * 11 10 9 39 39 H 1.09004 * 109.47220 * 300.00372 * 12 11 10 40 40 H 1.09006 * 109.46683 * 59.99873 * 12 11 10 41 41 H 0.96996 * 119.99795 * 0.02562 * 13 12 11 42 42 H 0.97001 * 120.00485 * 180.02562 * 17 16 14 43 43 H 1.09006 * 109.49439 * 301.40967 * 22 10 9 44 44 H 1.09000 * 109.49706 * 181.31739 * 22 10 9 45 45 H 1.09000 * 109.58443 * 353.37884 * 23 7 5 46 46 H 1.09003 * 109.58260 * 113.66033 * 23 7 5 47 47 H 1.08998 * 110.05326 * 186.40788 * 24 3 2 48 48 H 1.08999 * 110.02839 * 0.02562 * 25 24 3 49 49 H 1.09000 * 110.02764 * 121.43032 * 25 24 3 50 50 H 1.08992 * 110.48834 * 95.06688 * 26 25 24 51 51 H 1.09005 * 110.48492 * 217.71118 * 26 25 24 52 52 H 1.09003 * 110.75630 * 279.62951 * 27 26 25 53 53 H 1.09003 * 110.91449 * 156.33172 * 27 26 25 54 54 H 1.08995 * 110.48979 * 261.57159 * 28 24 3 55 55 H 1.09001 * 110.48840 * 24.22162 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3473 1.9983 -0.5182 5 6 2.2081 1.7672 1.4209 6 8 1.9686 1.0152 2.3418 7 7 2.6514 3.0157 1.6681 8 6 2.9517 3.9361 0.5629 9 6 2.1706 5.2399 0.7870 10 6 2.5024 5.7946 2.1741 11 6 1.7558 7.1129 2.3876 12 6 2.2733 8.1582 1.3975 13 7 1.5580 9.4204 1.6015 14 6 1.8536 10.5082 0.8241 15 1 2.6138 10.4357 0.0603 16 6 1.1762 11.7043 1.0178 17 7 0.2503 11.7928 1.9488 18 14 1.5790 13.1881 -0.0432 19 1 2.6484 12.8303 -1.0093 20 1 0.3638 13.6108 -0.7848 21 1 2.0444 14.3027 0.8208 22 6 2.0745 4.7873 3.2440 23 6 2.8487 3.4805 3.0480 24 6 3.3621 1.2619 -0.7150 25 6 3.1619 0.9124 -2.2001 26 6 3.9268 -0.4036 -2.4503 27 6 4.9991 -0.4380 -1.3330 28 6 4.2418 0.1459 -0.1145 29 1 -0.3633 0.4380 -0.9295 30 1 -0.3633 -1.0241 0.0855 31 1 -0.3633 0.5860 0.8442 32 1 4.0209 4.1463 0.5428 33 1 2.6482 3.4844 -0.3814 34 1 1.1008 5.0419 0.7206 35 1 2.4541 5.9677 0.0267 36 1 3.5758 5.9690 2.2482 37 1 0.6892 6.9566 2.2265 38 1 1.9218 7.4637 3.4062 39 1 3.3400 8.3145 1.5586 40 1 2.1073 7.8074 0.3789 41 1 0.8751 9.4854 2.2872 42 1 -0.2234 12.6285 2.0839 43 1 1.0056 4.5937 3.1545 44 1 2.2898 5.1931 4.2325 45 1 2.4772 2.7280 3.7436 46 1 3.9101 3.6519 3.2275 47 1 3.8652 2.2243 -0.6223 48 1 2.1016 0.7744 -2.4115 49 1 3.5678 1.7055 -2.8282 50 1 3.2557 -1.2578 -2.3613 51 1 4.3996 -0.3893 -3.4324 52 1 5.8508 0.1896 -1.5955 53 1 5.3211 -1.4602 -1.1341 54 1 4.9444 0.5611 0.6080 55 1 3.6215 -0.6197 0.3517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267919361.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:30 Heat of formation + Delta-G solvation = -110.188300 kcal Electronic energy + Delta-G solvation = -30837.046713 eV Core-core repulsion = 26872.450904 eV Total energy + Delta-G solvation = -3964.595809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.79849 -39.74718 -38.68799 -37.68004 -36.83753 -35.09554 -33.25673 -32.42673 -31.31210 -29.87228 -29.55782 -27.62493 -27.09699 -25.96045 -24.40113 -24.36358 -22.52729 -21.62507 -21.41933 -20.73034 -20.21213 -19.12047 -18.32245 -17.83158 -17.09836 -16.76601 -16.57001 -16.42082 -15.93404 -15.75175 -15.53268 -15.47897 -15.27778 -15.08211 -14.77824 -14.55277 -14.28228 -14.13036 -14.02210 -13.92347 -13.62325 -13.18481 -13.03070 -12.87072 -12.57090 -12.49940 -12.36988 -12.28199 -12.15687 -12.05350 -11.97453 -11.94423 -11.87934 -11.68541 -11.63777 -11.60022 -11.48553 -11.34521 -11.19602 -11.14172 -10.88539 -10.24007 -9.67966 -8.98307 -7.95013 -5.23840 1.47982 1.48907 1.50475 1.59068 1.88242 2.56607 2.73472 3.33684 3.39142 3.62247 3.66244 3.69873 3.76725 3.81049 3.90704 4.02546 4.11157 4.20732 4.30643 4.32903 4.39167 4.44414 4.47161 4.48684 4.58570 4.61856 4.63312 4.66021 4.71441 4.76504 4.78563 4.83616 4.85260 4.90187 4.90289 4.96927 5.01498 5.05863 5.08515 5.12039 5.21456 5.29020 5.30037 5.35123 5.40288 5.46155 5.50460 5.54591 5.56171 5.58520 6.00159 6.27996 6.36585 7.10651 7.33396 8.11501 8.32829 9.29144 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.002172 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.239093 B =12889.271983 C =13593.167443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.369 6.369 3 C 0.081 3.919 4 H 0.104 0.896 5 C 0.490 3.510 6 O -0.577 6.577 7 N -0.605 5.605 8 C 0.101 3.899 9 C -0.130 4.130 10 C -0.073 4.073 11 C -0.109 4.109 12 C 0.151 3.849 13 N -0.752 5.752 14 C -0.242 4.242 15 H 0.078 0.922 16 C -0.081 4.081 17 N -0.973 5.973 18 Si 0.974 3.026 19 H -0.263 1.263 20 H -0.293 1.293 21 H -0.294 1.294 22 C -0.120 4.120 23 C 0.113 3.887 24 C -0.090 4.090 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.118 4.118 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.028 0.972 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.030 0.970 41 H 0.371 0.629 42 H 0.251 0.749 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.109 0.891 48 H 0.066 0.934 49 H 0.085 0.915 50 H 0.057 0.943 51 H 0.076 0.924 52 H 0.076 0.924 53 H 0.063 0.937 54 H 0.054 0.946 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.913 -26.770 -8.162 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.286 6.286 3 C 0.020 3.980 4 H 0.121 0.879 5 C 0.278 3.722 6 O -0.456 6.456 7 N -0.339 5.339 8 C -0.020 4.020 9 C -0.168 4.168 10 C -0.092 4.092 11 C -0.147 4.147 12 C 0.026 3.974 13 N -0.394 5.394 14 C -0.374 4.374 15 H 0.096 0.904 16 C -0.273 4.273 17 N -0.624 5.624 18 Si 0.803 3.197 19 H -0.187 1.187 20 H -0.221 1.221 21 H -0.221 1.221 22 C -0.159 4.159 23 C -0.010 4.010 24 C -0.109 4.109 25 C -0.150 4.150 26 C -0.157 4.157 27 C -0.158 4.158 28 C -0.156 4.156 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.047 0.953 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.047 0.953 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.127 0.873 48 H 0.085 0.915 49 H 0.103 0.897 50 H 0.076 0.924 51 H 0.094 0.906 52 H 0.095 0.905 53 H 0.082 0.918 54 H 0.073 0.927 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.997 -27.281 -7.836 29.489 hybrid contribution -0.834 1.347 0.473 1.654 sum 7.163 -25.933 -7.362 27.894 Atomic orbital electron populations 1.22972 0.79952 1.03827 1.00342 1.87963 1.20798 1.25554 1.94309 1.22208 0.98237 0.86688 0.90881 0.87898 1.21869 0.76089 0.81333 0.92873 1.90662 1.52480 1.54855 1.47610 1.48284 1.64930 1.12487 1.08170 1.22278 1.01246 0.89130 0.89391 1.22105 1.00436 0.96809 0.97487 1.21002 1.00529 0.92683 0.95019 1.21631 0.99600 0.94586 0.98865 1.20899 0.94374 0.85012 0.97158 1.42693 1.45557 1.08746 1.42425 1.19710 1.15707 0.90300 1.11685 0.90372 1.25622 0.99503 1.01116 1.01029 1.69826 1.28977 1.26504 1.37065 0.85054 0.77353 0.79262 0.78002 1.18709 1.22067 1.22145 1.21878 0.99794 0.94383 0.99798 1.21585 1.00833 0.95736 0.82796 1.22174 0.91592 1.01272 0.95845 1.22150 1.01139 0.98308 0.93430 1.22300 0.97209 0.97469 0.98752 1.22471 0.97973 1.00875 0.94451 1.22296 0.97652 0.97675 0.97942 0.91788 0.88381 0.95344 0.88809 0.87601 0.92286 0.89489 0.89814 0.93088 0.92696 0.96269 0.95260 0.79746 0.94061 0.92836 0.89941 0.90891 0.89824 0.87326 0.91495 0.89677 0.92405 0.90555 0.90543 0.91803 0.92673 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.79 113.37 1.22 1.64 16 2 O -0.37 -7.70 8.34 -129.99 -1.08 -8.78 16 3 C 0.08 1.43 1.15 29.85 0.03 1.46 16 4 H 0.10 1.41 7.13 -2.39 -0.02 1.40 16 5 C 0.49 11.41 6.62 87.66 0.58 11.99 16 6 O -0.58 -18.50 15.92 15.95 0.25 -18.25 16 7 N -0.60 -11.64 2.97 -818.13 -2.43 -14.06 16 8 C 0.10 1.41 4.92 86.51 0.43 1.84 16 9 C -0.13 -2.40 5.16 30.82 0.16 -2.24 16 10 C -0.07 -1.57 2.15 -10.77 -0.02 -1.59 16 11 C -0.11 -3.25 4.80 30.59 0.15 -3.10 16 12 C 0.15 5.69 6.02 86.38 0.52 6.21 16 13 N -0.75 -38.11 5.60 -343.43 -1.92 -40.03 16 14 C -0.24 -13.44 9.99 84.04 0.84 -12.60 16 15 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 16 C -0.08 -4.65 5.50 84.87 0.47 -4.18 16 17 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 18 Si 0.97 45.75 29.55 68.60 2.03 47.77 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 C -0.12 -2.45 5.36 30.66 0.16 -2.29 16 23 C 0.11 2.25 6.43 86.35 0.55 2.80 16 24 C -0.09 -1.23 2.27 -10.07 -0.02 -1.26 16 25 C -0.11 -1.22 6.28 31.32 0.20 -1.02 16 26 C -0.12 -1.38 6.83 31.67 0.22 -1.17 16 27 C -0.12 -1.53 6.91 31.89 0.22 -1.31 16 28 C -0.12 -1.99 5.82 31.67 0.18 -1.80 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.03 0.55 8.12 -2.39 -0.02 0.53 16 32 H 0.09 1.03 8.13 -2.39 -0.02 1.01 16 33 H 0.11 1.08 4.75 -2.39 -0.01 1.07 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.62 6.50 -2.39 -0.02 1.61 16 36 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.03 1.06 6.53 -2.38 -0.02 1.04 16 41 H 0.37 20.22 7.67 -92.71 -0.71 19.51 16 42 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.07 1.73 7.01 -2.39 -0.02 1.72 16 46 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.11 1.15 5.48 -2.39 -0.01 1.14 16 48 H 0.07 0.75 7.57 -2.39 -0.02 0.73 16 49 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 52 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 54 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 55 H 0.05 1.24 6.92 -2.39 -0.02 1.22 16 Total: -1.00 -72.78 415.96 3.16 -69.62 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.14 Total: 29.98 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 5.89 Total: -6.63 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -4.07 Total: -113.71 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.83 Total: -27.03 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -72.78 3.16 -69.62 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267919361.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.568 kcal (2) G-P(sol) polarization free energy of solvation -72.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds