Wall clock time and date at job start Tue Mar 31 2020 22:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99752 * 2 1 4 4 C 1.53009 * 109.46902 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46797 * 184.42172 * 4 3 2 6 6 C 1.50701 * 110.43231 * 294.92736 * 5 4 3 7 7 O 1.21283 * 119.99829 * 127.21059 * 6 5 4 8 8 N 1.34778 * 119.99996 * 307.20418 * 6 5 4 9 9 C 1.46508 * 119.99713 * 174.56676 * 8 6 5 10 10 H 1.08999 * 110.01665 * 325.70709 * 9 8 6 11 11 C 1.54268 * 110.02875 * 87.09776 * 9 8 6 12 12 C 1.55013 * 104.13622 * 95.68381 * 11 9 8 13 13 C 1.54893 * 102.75741 * 37.94806 * 12 11 9 14 14 C 1.53871 * 110.03015 * 204.31272 * 9 8 6 15 15 H 1.08998 * 110.03906 * 0.05157 * 14 9 8 16 16 C 1.53000 * 110.03423 * 121.43431 * 14 9 8 17 17 N 1.46494 * 109.47703 * 184.99785 * 16 14 9 18 18 C 1.36937 * 120.00206 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99878 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99798 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00081 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99858 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46985 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47458 * 120.00381 * 22 20 18 25 25 H 1.48504 * 109.46881 * 240.00540 * 22 20 18 26 26 C 1.54887 * 110.48492 * 172.24671 * 5 4 3 27 27 C 1.54880 * 102.74953 * 203.37618 * 26 5 4 28 28 C 1.54268 * 104.19757 * 37.94203 * 27 26 5 29 29 C 1.53878 * 106.59408 * 336.39102 * 28 27 26 30 30 H 1.09001 * 109.47519 * 59.99536 * 1 2 3 31 31 H 1.09002 * 109.47316 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47480 * 299.99781 * 1 2 3 33 33 H 1.08997 * 109.47339 * 60.00478 * 3 2 1 34 34 H 1.08996 * 109.47409 * 300.00010 * 3 2 1 35 35 H 1.08994 * 109.46862 * 64.42289 * 4 3 2 36 36 H 1.08994 * 109.46931 * 304.42112 * 4 3 2 37 37 H 0.97000 * 120.00112 * 354.57826 * 8 6 5 38 38 H 1.08996 * 110.48666 * 214.34857 * 11 9 8 39 39 H 1.08998 * 110.48760 * 336.99483 * 11 9 8 40 40 H 1.09006 * 110.76523 * 279.63092 * 12 11 9 41 41 H 1.09002 * 110.90299 * 156.33867 * 12 11 9 42 42 H 1.08991 * 110.48928 * 203.36713 * 13 12 11 43 43 H 1.09001 * 110.59256 * 80.77766 * 13 12 11 44 44 H 1.08999 * 109.46846 * 305.00227 * 16 14 9 45 45 H 1.09007 * 109.47090 * 64.99408 * 16 14 9 46 46 H 0.97001 * 119.99601 * 359.97438 * 17 16 14 47 47 H 0.97000 * 119.99844 * 179.97438 * 21 20 18 48 48 H 1.09001 * 110.75459 * 85.05698 * 26 5 4 49 49 H 1.09001 * 110.75273 * 321.69599 * 26 5 4 50 50 H 1.09003 * 110.49108 * 279.26238 * 27 26 5 51 51 H 1.09006 * 110.48795 * 156.61879 * 27 26 5 52 52 H 1.09001 * 110.03416 * 95.67342 * 28 27 26 53 53 H 1.08999 * 110.03550 * 217.10352 * 28 27 26 54 54 H 1.08997 * 110.03131 * 119.28535 * 29 28 27 55 55 H 1.09004 * 110.03174 * 240.66854 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1574 2.5782 0.1106 6 6 3.8347 3.3974 -1.1124 7 8 3.3360 4.4964 -0.9919 8 7 4.1005 2.9090 -2.3402 9 6 3.6793 3.6515 -3.5309 10 1 2.7352 4.1609 -3.3383 11 6 4.7625 4.6769 -3.9246 12 6 5.5988 3.9475 -5.0069 13 6 4.5229 3.1665 -5.8018 14 6 3.5267 2.6917 -4.7238 15 1 3.7650 1.6734 -4.4168 16 6 2.0977 2.7539 -5.2671 17 7 1.9324 1.7517 -6.3227 18 6 0.7275 1.6210 -6.9602 19 1 -0.1007 2.2570 -6.6850 20 6 0.5711 0.6716 -7.9607 21 7 1.5808 -0.1032 -8.2964 22 14 -1.0723 0.4938 -8.8308 23 1 -2.0365 1.4758 -8.2730 24 1 -0.8934 0.7466 -10.2832 25 1 -1.5932 -0.8821 -8.6283 26 6 5.6901 2.4735 0.3075 27 6 6.0402 3.8206 0.9869 28 6 4.8571 4.0814 1.9421 29 6 3.6600 3.2913 1.3848 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8622 0.7139 -0.9278 36 1 3.8521 0.5768 0.8468 37 1 4.5704 2.0658 -2.4354 38 1 4.3047 5.5758 -4.3374 39 1 5.3839 4.9248 -3.0642 40 1 6.3124 3.2632 -4.5479 41 1 6.1110 4.6629 -5.6503 42 1 4.9697 2.3126 -6.3109 43 1 4.0263 3.8201 -6.5189 44 1 1.3932 2.5515 -4.4604 45 1 1.9071 3.7465 -5.6754 46 1 2.6765 1.1807 -6.5701 47 1 1.4713 -0.7668 -8.9954 48 1 6.1976 2.3818 -0.6528 49 1 5.9395 1.6359 0.9590 50 1 6.1130 4.6150 0.2442 51 1 6.9711 3.7347 1.5474 52 1 5.1021 3.7303 2.9445 53 1 4.6237 5.1458 1.9655 54 1 3.3241 2.5568 2.1167 55 1 2.8453 3.9723 1.1385 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268295277.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:56 Heat of formation + Delta-G solvation = -123.449604 kcal Electronic energy + Delta-G solvation = -31473.434323 eV Core-core repulsion = 27508.263461 eV Total energy + Delta-G solvation = -3965.170862 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.82538 -39.89329 -38.80469 -37.87802 -36.33740 -34.76769 -33.45002 -33.20162 -30.25678 -29.88196 -29.05821 -28.39640 -26.77584 -26.32998 -24.28715 -23.74895 -23.27572 -21.69105 -21.26485 -20.99382 -19.90185 -19.08662 -17.87158 -17.73464 -17.37209 -16.95978 -16.58430 -16.36695 -16.30289 -15.96174 -15.89324 -15.39664 -15.31349 -15.05067 -14.94377 -14.60652 -14.43013 -14.23546 -13.93636 -13.40367 -13.26657 -13.19804 -12.87369 -12.69111 -12.56887 -12.48816 -12.41931 -12.21451 -12.15490 -12.13555 -11.96042 -11.94434 -11.88656 -11.77358 -11.73843 -11.65131 -11.58261 -11.47993 -11.28834 -10.97028 -10.71483 -10.60617 -10.02435 -9.02432 -7.97531 -5.26136 1.45381 1.45757 1.55968 1.63855 2.17722 2.53819 2.69198 3.35475 3.44826 3.46347 3.58462 3.67256 3.73783 3.89348 4.02690 4.05909 4.12496 4.16338 4.30512 4.39169 4.41398 4.43180 4.45321 4.46460 4.49982 4.52758 4.58229 4.61582 4.65632 4.69776 4.75579 4.79155 4.82789 4.91022 4.97336 4.98279 5.01570 5.02998 5.06033 5.10265 5.16580 5.18232 5.24266 5.30275 5.32749 5.34750 5.45727 5.48781 5.51261 5.63666 6.12405 6.24882 6.57693 7.26902 7.31867 8.05727 8.31837 9.25853 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.003262 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.963038 B = 8582.563159 C =10394.627008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.057 3.943 4 C -0.098 4.098 5 C -0.075 4.075 6 C 0.525 3.475 7 O -0.575 6.575 8 N -0.710 5.710 9 C 0.155 3.845 10 H 0.064 0.936 11 C -0.121 4.121 12 C -0.110 4.110 13 C -0.111 4.111 14 C -0.090 4.090 15 H 0.078 0.922 16 C 0.163 3.837 17 N -0.738 5.738 18 C -0.248 4.248 19 H 0.069 0.931 20 C -0.070 4.070 21 N -0.965 5.965 22 Si 0.971 3.029 23 H -0.270 1.270 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.103 4.103 27 C -0.124 4.124 28 C -0.119 4.119 29 C -0.110 4.110 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.409 0.591 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.005 0.995 45 H 0.017 0.983 46 H 0.377 0.623 47 H 0.252 0.748 48 H 0.077 0.923 49 H 0.105 0.895 50 H 0.046 0.954 51 H 0.088 0.912 52 H 0.083 0.917 53 H 0.051 0.949 54 H 0.087 0.913 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.309 5.036 22.421 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C -0.019 4.019 4 C -0.136 4.136 5 C -0.078 4.078 6 C 0.313 3.687 7 O -0.454 6.454 8 N -0.362 5.362 9 C 0.050 3.950 10 H 0.082 0.918 11 C -0.160 4.160 12 C -0.147 4.147 13 C -0.148 4.148 14 C -0.109 4.109 15 H 0.097 0.903 16 C 0.036 3.964 17 N -0.381 5.381 18 C -0.380 4.380 19 H 0.087 0.913 20 C -0.263 4.263 21 N -0.615 5.615 22 Si 0.800 3.200 23 H -0.194 1.194 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.140 4.140 27 C -0.162 4.162 28 C -0.157 4.157 29 C -0.147 4.147 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.246 0.754 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.023 0.977 45 H 0.035 0.965 46 H 0.209 0.791 47 H 0.061 0.939 48 H 0.096 0.904 49 H 0.124 0.876 50 H 0.065 0.935 51 H 0.106 0.894 52 H 0.102 0.898 53 H 0.070 0.930 54 H 0.106 0.894 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.848 5.706 22.472 25.598 hybrid contribution -1.240 -0.396 -1.200 1.770 sum 9.608 5.310 21.273 23.938 Atomic orbital electron populations 1.22890 0.79968 1.03854 1.00318 1.87803 1.21005 1.28378 1.95498 1.22639 0.95103 0.84380 0.99795 1.21545 0.92039 0.94896 1.05073 1.21620 0.99306 0.94150 0.92742 1.20831 0.76602 0.86243 0.85059 1.90658 1.45469 1.22312 1.86991 1.46095 1.59323 1.25878 1.04872 1.21385 0.97809 0.92103 0.83751 0.91783 1.22668 0.96810 0.97489 0.99020 1.22486 0.96719 0.98913 0.96598 1.22303 0.95890 0.99873 0.96774 1.22050 0.94830 0.99271 0.94783 0.90331 1.20804 0.94370 0.91563 0.89615 1.42458 1.11880 1.41766 1.42003 1.19612 0.90831 1.14469 1.13081 0.91288 1.25512 1.01035 0.98976 1.00772 1.69805 1.31923 1.25381 1.34433 0.85117 0.79605 0.77300 0.77999 1.19439 1.21755 1.21797 1.22623 0.89880 0.99282 1.02263 1.22359 0.98932 0.96537 0.98350 1.22083 0.94261 0.99633 0.99699 1.22185 0.98853 0.99049 0.94646 0.95056 0.88181 0.92525 0.92073 0.95903 0.90507 0.87663 0.75426 0.91238 0.91056 0.90149 0.90323 0.91886 0.92715 0.97716 0.96518 0.79070 0.93882 0.90443 0.87618 0.93512 0.89360 0.89829 0.93037 0.89439 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.41 -10.39 10.70 -148.98 -1.59 -11.98 16 3 C 0.06 1.32 5.50 71.99 0.40 1.71 16 4 C -0.10 -1.72 4.46 30.60 0.14 -1.59 16 5 C -0.07 -1.33 0.49 -51.86 -0.03 -1.35 16 6 C 0.53 13.03 5.43 87.66 0.48 13.51 16 7 O -0.58 -18.74 15.21 -3.04 -0.05 -18.79 16 8 N -0.71 -16.62 4.83 -439.08 -2.12 -18.74 16 9 C 0.16 4.31 2.85 45.71 0.13 4.44 16 10 H 0.06 2.13 7.20 -2.39 -0.02 2.11 16 11 C -0.12 -2.92 6.54 31.71 0.21 -2.71 16 12 C -0.11 -2.41 6.91 31.93 0.22 -2.19 16 13 C -0.11 -3.25 6.08 31.67 0.19 -3.06 16 14 C -0.09 -2.85 2.73 -10.07 -0.03 -2.87 16 15 H 0.08 2.48 7.61 -2.39 -0.02 2.46 16 16 C 0.16 6.82 5.31 86.38 0.46 7.28 16 17 N -0.74 -38.08 5.45 -343.46 -1.87 -39.95 16 18 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 19 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 21 N -0.96 -58.96 13.06 21.65 0.28 -58.68 16 22 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 C -0.10 -1.29 5.81 31.88 0.19 -1.11 16 27 C -0.12 -1.73 6.61 31.67 0.21 -1.52 16 28 C -0.12 -1.80 6.80 31.32 0.21 -1.58 16 29 C -0.11 -1.93 4.53 31.32 0.14 -1.79 16 30 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.26 6.78 -2.39 -0.02 1.25 16 34 H 0.02 0.64 7.58 -2.39 -0.02 0.62 16 35 H 0.08 1.37 7.23 -2.39 -0.02 1.35 16 36 H 0.10 1.45 8.07 -2.39 -0.02 1.43 16 37 H 0.41 7.86 7.47 -92.71 -0.69 7.16 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 40 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.05 1.81 7.76 -2.39 -0.02 1.80 16 44 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.02 0.72 8.00 -2.38 -0.02 0.70 16 46 H 0.38 20.27 7.55 -92.71 -0.70 19.57 16 47 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 48 H 0.08 0.91 8.04 -2.39 -0.02 0.89 16 49 H 0.11 0.89 8.00 -2.39 -0.02 0.87 16 50 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 52 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 54 H 0.09 1.23 7.43 -2.39 -0.02 1.21 16 55 H 0.05 1.28 6.96 -2.38 -0.02 1.27 16 Total: -1.00 -70.94 424.26 1.61 -69.33 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: -0.53 Total: 38.09 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 5.47 Total: -8.00 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -3.71 Total: -117.37 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.64 Total: -30.77 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -70.94 1.61 -69.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268295277.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.119 kcal (2) G-P(sol) polarization free energy of solvation -70.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds