Wall clock time and date at job start Tue Mar 31 2020 22:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00230 * 2 1 4 4 C 1.53003 * 109.47029 * 184.58429 * 3 2 1 5 5 C 1.52997 * 109.46863 * 185.16897 * 4 3 2 6 6 C 1.50702 * 110.43444 * 304.05045 * 5 4 3 7 7 O 1.21284 * 120.00007 * 250.29662 * 6 5 4 8 8 N 1.34773 * 119.99883 * 70.30162 * 6 5 4 9 9 C 1.46501 * 119.99689 * 185.23605 * 8 6 5 10 10 H 1.09000 * 110.05748 * 37.75419 * 9 8 6 11 11 C 1.54270 * 110.03412 * 276.33575 * 9 8 6 12 12 C 1.54887 * 104.19604 * 217.10980 * 11 9 8 13 13 C 1.54885 * 102.75038 * 37.94189 * 12 11 9 14 14 C 1.53876 * 110.03056 * 159.17439 * 9 8 6 15 15 H 1.09007 * 110.06941 * 238.59298 * 14 9 8 16 16 C 1.53004 * 110.03322 * 359.97438 * 14 9 8 17 17 N 1.46503 * 109.47139 * 182.49663 * 16 14 9 18 18 C 1.36932 * 120.00087 * 185.07175 * 17 16 14 19 19 H 1.08010 * 119.99763 * 355.68359 * 18 17 16 20 20 C 1.38802 * 120.00346 * 175.40854 * 18 17 16 21 21 N 1.31623 * 119.99879 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00399 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46882 * 59.99816 * 22 20 18 24 24 H 1.48491 * 109.47511 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46922 * 300.00498 * 22 20 18 26 26 C 1.54884 * 110.60051 * 66.66808 * 5 4 3 27 27 C 1.54889 * 102.75044 * 156.67232 * 26 5 4 28 28 C 1.54272 * 104.19698 * 322.06340 * 27 26 5 29 29 C 1.53874 * 106.59891 * 23.60512 * 28 27 26 30 30 H 1.09004 * 109.47030 * 64.87779 * 1 2 3 31 31 H 1.09003 * 109.47612 * 184.87736 * 1 2 3 32 32 H 1.09001 * 109.47262 * 304.87820 * 1 2 3 33 33 H 1.08994 * 109.47050 * 64.58668 * 3 2 1 34 34 H 1.09003 * 109.47026 * 304.58267 * 3 2 1 35 35 H 1.09005 * 109.47096 * 65.16933 * 4 3 2 36 36 H 1.08994 * 109.47102 * 305.16909 * 4 3 2 37 37 H 0.96999 * 120.00395 * 5.23496 * 8 6 5 38 38 H 1.08997 * 110.48390 * 98.42684 * 11 9 8 39 39 H 1.09003 * 110.59914 * 335.84145 * 11 9 8 40 40 H 1.09003 * 110.75571 * 279.62608 * 12 11 9 41 41 H 1.09001 * 110.91195 * 156.33239 * 12 11 9 42 42 H 1.09008 * 110.48519 * 203.38080 * 13 12 11 43 43 H 1.08999 * 110.48425 * 80.74151 * 13 12 11 44 44 H 1.08998 * 109.46975 * 62.49182 * 16 14 9 45 45 H 1.09002 * 109.46534 * 302.49583 * 16 14 9 46 46 H 0.97006 * 119.99970 * 5.07195 * 17 16 14 47 47 H 0.97001 * 119.99924 * 179.97438 * 21 20 18 48 48 H 1.08989 * 110.76041 * 274.99110 * 26 5 4 49 49 H 1.09007 * 110.75350 * 38.36166 * 26 5 4 50 50 H 1.08995 * 110.49004 * 203.38003 * 27 26 5 51 51 H 1.09000 * 110.48573 * 80.73721 * 27 26 5 52 52 H 1.08998 * 110.02917 * 264.32455 * 28 27 26 53 53 H 1.08994 * 110.07287 * 142.91759 * 28 27 26 54 54 H 1.09002 * 110.03183 * 240.72168 * 29 28 27 55 55 H 1.08997 * 110.06995 * 119.30703 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5313 1.1864 -0.1153 5 6 4.1626 2.5740 0.0141 6 6 3.5847 3.5129 -1.0133 7 8 4.2668 3.8886 -1.9432 8 7 2.3099 3.9351 -0.8988 9 6 1.7120 4.7544 -1.9559 10 1 2.0547 4.4128 -2.9326 11 6 2.0883 6.2366 -1.7525 12 6 0.8145 7.0126 -2.1700 13 6 -0.3256 6.1133 -1.6313 14 6 0.1771 4.6761 -1.8789 15 1 -0.2256 4.2961 -2.8178 16 6 -0.2439 3.7666 -0.7228 17 7 -1.7043 3.6533 -0.6975 18 6 -2.3206 2.9711 0.3173 19 1 -1.7285 2.4577 1.0605 20 6 -3.7063 2.9442 0.3942 21 7 -4.4279 3.5739 -0.5087 22 14 -4.5471 2.0130 1.7782 23 1 -4.1263 2.5810 3.0841 24 1 -6.0199 2.1373 1.6352 25 1 -4.1633 0.5798 1.7151 26 6 3.9530 3.1371 1.4416 27 6 5.1034 4.1656 1.5758 28 6 6.2936 3.4979 0.8562 29 6 5.6954 2.4860 -0.1367 30 1 -0.3633 0.4363 -0.9305 31 1 -0.3634 -1.0239 0.0874 32 1 -0.3634 0.5877 0.8431 33 1 1.7552 1.8167 0.9282 34 1 1.6252 1.8746 -0.8461 35 1 3.7899 0.7584 -1.0839 36 1 3.9064 0.5410 0.6789 37 1 1.7884 3.6966 -0.1166 38 1 2.9276 6.5084 -2.3925 39 1 2.3281 6.4314 -0.7072 40 1 0.7555 7.1031 -3.2547 41 1 0.7861 7.9956 -1.6998 42 1 -1.2480 6.2952 -2.1831 43 1 -0.4770 6.2864 -0.5659 44 1 0.1040 4.1913 0.2188 45 1 0.1950 2.7783 -0.8597 46 1 -2.2347 4.0615 -1.3997 47 1 -5.3962 3.5548 -0.4551 48 1 2.9838 3.6287 1.5246 49 1 4.0519 2.3476 2.1867 50 1 5.3404 4.3382 2.6255 51 1 4.8374 5.1017 1.0849 52 1 6.9255 2.9824 1.5794 53 1 6.8752 4.2479 0.3203 54 1 6.0371 1.4794 0.1047 55 1 5.9859 2.7446 -1.1549 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268295279.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:03 Heat of formation + Delta-G solvation = -104.470196 kcal Electronic energy + Delta-G solvation = -32746.813699 eV Core-core repulsion = 28782.465846 eV Total energy + Delta-G solvation = -3964.347853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.03679 -39.88030 -38.85033 -37.89164 -36.20375 -35.00099 -33.35339 -33.28166 -30.22094 -29.72529 -29.19192 -28.28556 -26.79066 -26.37313 -24.49340 -23.74866 -23.31517 -21.67448 -21.34005 -20.40153 -20.34870 -19.07850 -17.89232 -17.72051 -17.15084 -17.05218 -16.54196 -16.41475 -16.29261 -16.01439 -15.79791 -15.30331 -15.18940 -15.06093 -15.01524 -14.75781 -14.52632 -14.21779 -13.95683 -13.47480 -13.18773 -13.11258 -12.90044 -12.74650 -12.72523 -12.38347 -12.33512 -12.27848 -12.15047 -12.11432 -11.99705 -11.94854 -11.79486 -11.74764 -11.72301 -11.58006 -11.55663 -11.46836 -11.28174 -10.89943 -10.69880 -10.59675 -9.98503 -8.95752 -7.91386 -5.19657 1.49306 1.50252 1.56142 1.59337 2.16067 2.57274 2.71498 3.38622 3.42574 3.45250 3.57623 3.66827 3.72659 3.83094 3.99076 4.07026 4.15537 4.17041 4.31754 4.33417 4.36265 4.45040 4.48559 4.51436 4.51635 4.53576 4.55866 4.59943 4.63991 4.66059 4.73594 4.80541 4.85400 4.88060 4.90207 4.93655 5.03460 5.04395 5.07934 5.10924 5.15099 5.20379 5.24304 5.28336 5.31307 5.33844 5.46045 5.49082 5.53084 5.57588 6.13769 6.29214 6.48831 7.19524 7.37326 8.10876 8.35486 9.31816 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.004279 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.774475 B = 6542.597477 C = 8158.332749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.401 6.401 3 C 0.040 3.960 4 C -0.094 4.094 5 C -0.077 4.077 6 C 0.526 3.474 7 O -0.570 6.570 8 N -0.721 5.721 9 C 0.152 3.848 10 H 0.078 0.922 11 C -0.122 4.122 12 C -0.114 4.114 13 C -0.107 4.107 14 C -0.103 4.103 15 H 0.074 0.926 16 C 0.155 3.845 17 N -0.736 5.736 18 C -0.233 4.233 19 H 0.077 0.923 20 C -0.069 4.069 21 N -0.967 5.967 22 Si 0.960 3.040 23 H -0.279 1.279 24 H -0.301 1.301 25 H -0.275 1.275 26 C -0.116 4.116 27 C -0.124 4.124 28 C -0.119 4.119 29 C -0.107 4.107 30 H 0.031 0.969 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.407 0.593 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.022 0.978 45 H 0.027 0.973 46 H 0.374 0.626 47 H 0.249 0.751 48 H 0.064 0.936 49 H 0.102 0.898 50 H 0.087 0.913 51 H 0.049 0.951 52 H 0.085 0.915 53 H 0.057 0.943 54 H 0.090 0.910 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.735 0.495 2.870 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.320 6.320 3 C -0.037 4.037 4 C -0.132 4.132 5 C -0.080 4.080 6 C 0.313 3.687 7 O -0.449 6.449 8 N -0.375 5.375 9 C 0.047 3.953 10 H 0.096 0.904 11 C -0.160 4.160 12 C -0.152 4.152 13 C -0.145 4.145 14 C -0.122 4.122 15 H 0.092 0.908 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.365 4.365 19 H 0.095 0.905 20 C -0.261 4.261 21 N -0.617 5.617 22 Si 0.789 3.211 23 H -0.205 1.205 24 H -0.227 1.227 25 H -0.201 1.201 26 C -0.153 4.153 27 C -0.162 4.162 28 C -0.156 4.156 29 C -0.144 4.144 30 H 0.050 0.950 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.247 0.753 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.044 0.956 46 H 0.206 0.794 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.120 0.880 50 H 0.106 0.894 51 H 0.068 0.932 52 H 0.103 0.897 53 H 0.076 0.924 54 H 0.109 0.891 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.310 0.483 2.365 20.453 hybrid contribution -1.853 -0.111 0.409 1.901 sum 18.457 0.372 2.774 18.668 Atomic orbital electron populations 1.22766 0.79790 1.03190 1.00304 1.87754 1.20449 1.28265 1.95559 1.23125 0.94604 0.85178 1.00761 1.21464 0.92279 0.95049 1.04367 1.21622 0.97810 0.93460 0.95138 1.20794 0.81260 0.80347 0.86279 1.90626 1.60050 1.58714 1.35499 1.46682 1.13465 1.53305 1.24094 1.21563 0.91219 0.91409 0.91129 0.90413 1.22662 0.98213 0.93315 1.01831 1.22451 0.92962 0.98383 1.01364 1.22253 0.98256 0.93064 1.00913 1.22140 0.93737 0.97049 0.99306 0.90780 1.20977 0.84672 0.96221 0.95290 1.42465 1.01346 1.64980 1.29034 1.19467 0.89694 1.23417 1.03922 0.90506 1.25431 0.97172 1.02502 1.01025 1.69799 1.04734 1.49192 1.38023 0.85417 0.77047 0.78959 0.79647 1.20517 1.22712 1.20124 1.22747 0.99118 0.99667 0.93794 1.22369 0.94775 0.97470 1.01553 1.22099 0.97719 0.97938 0.97877 1.22145 0.90399 1.01127 1.00769 0.94991 0.88354 0.94015 0.92598 0.93035 0.91336 0.87730 0.75276 0.91162 0.91332 0.90510 0.90126 0.92269 0.92467 0.95984 0.95551 0.79403 0.94216 0.91772 0.87998 0.89436 0.93184 0.89665 0.92397 0.89117 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.10 11.01 113.37 1.25 2.35 16 2 O -0.40 -11.96 10.70 -148.98 -1.59 -13.56 16 3 C 0.04 1.04 3.95 71.98 0.28 1.33 16 4 C -0.09 -2.01 4.54 30.59 0.14 -1.87 16 5 C -0.08 -1.60 0.55 -51.85 -0.03 -1.63 16 6 C 0.53 14.15 5.97 87.66 0.52 14.68 16 7 O -0.57 -18.73 15.23 -3.04 -0.05 -18.78 16 8 N -0.72 -19.03 3.00 -439.09 -1.32 -20.35 16 9 C 0.15 4.19 3.13 45.72 0.14 4.34 16 10 H 0.08 2.29 7.78 -2.39 -0.02 2.28 16 11 C -0.12 -2.97 6.50 31.67 0.21 -2.77 16 12 C -0.11 -2.64 6.91 31.88 0.22 -2.42 16 13 C -0.11 -3.17 6.03 31.67 0.19 -2.98 16 14 C -0.10 -3.19 2.98 -10.07 -0.03 -3.22 16 15 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 16 C 0.15 5.60 4.16 86.38 0.36 5.96 16 17 N -0.74 -34.41 5.38 -343.44 -1.85 -36.26 16 18 C -0.23 -11.97 9.99 84.03 0.84 -11.13 16 19 H 0.08 3.73 7.55 -2.91 -0.02 3.71 16 20 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 21 N -0.97 -56.88 13.06 21.65 0.28 -56.59 16 22 Si 0.96 43.92 29.55 68.60 2.03 45.95 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 26 C -0.12 -2.00 4.93 31.88 0.16 -1.84 16 27 C -0.12 -2.02 6.61 31.67 0.21 -1.81 16 28 C -0.12 -1.88 6.80 31.32 0.21 -1.67 16 29 C -0.11 -2.00 5.82 31.32 0.18 -1.82 16 30 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.04 1.34 7.86 -2.39 -0.02 1.32 16 33 H 0.06 1.38 6.85 -2.39 -0.02 1.37 16 34 H 0.05 1.52 3.97 -2.39 -0.01 1.51 16 35 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.10 1.84 8.10 -2.39 -0.02 1.82 16 37 H 0.41 10.59 2.87 -92.71 -0.27 10.32 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 1.67 8.05 -2.39 -0.02 1.65 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.06 1.86 7.80 -2.39 -0.02 1.84 16 44 H 0.02 0.80 7.06 -2.39 -0.02 0.78 16 45 H 0.03 0.96 4.88 -2.39 -0.01 0.95 16 46 H 0.37 19.05 7.57 -92.70 -0.70 18.35 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 48 H 0.06 1.19 6.56 -2.39 -0.02 1.17 16 49 H 0.10 1.41 8.03 -2.38 -0.02 1.39 16 50 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 54 H 0.09 1.34 7.84 -2.39 -0.02 1.32 16 55 H 0.06 1.51 6.78 -2.39 -0.02 1.49 16 Total: -1.00 -63.11 409.18 2.74 -60.37 By element: Atomic # 1 Polarization: 47.07 SS G_CDS: -0.09 Total: 46.98 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.32 Total: -7.77 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -2.88 Total: -113.20 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.64 Total: -32.34 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -63.11 2.74 -60.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268295279.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.095 kcal (2) G-P(sol) polarization free energy of solvation -63.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds