Wall clock time and date at job start Tue Mar 31 2020 22:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99863 * 2 1 4 4 C 1.53000 * 109.47338 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47354 * 175.76231 * 4 3 2 6 6 C 1.50700 * 110.01968 * 302.82195 * 5 4 3 7 7 O 1.21278 * 120.00225 * 123.90951 * 6 5 4 8 8 N 1.34778 * 119.99505 * 303.90735 * 6 5 4 9 9 C 1.46498 * 119.99815 * 174.76902 * 8 6 5 10 10 H 1.09001 * 110.44152 * 36.08219 * 9 8 6 11 11 C 1.54274 * 110.48576 * 273.54128 * 9 8 6 12 12 C 1.53869 * 106.60293 * 217.71100 * 11 9 8 13 13 C 1.54274 * 106.59751 * 0.02562 * 12 11 9 14 14 C 1.54888 * 110.48915 * 158.77269 * 9 8 6 15 15 H 1.08999 * 110.76044 * 38.29928 * 14 9 8 16 16 C 1.53001 * 110.75360 * 274.93400 * 14 9 8 17 17 N 1.46505 * 109.47031 * 174.99634 * 16 14 9 18 18 C 1.36936 * 119.99889 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00093 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00167 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00364 * 180.02562 * 20 18 17 22 22 Si 1.86808 * 119.99757 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47209 * 89.99722 * 22 20 18 24 24 H 1.48504 * 109.46865 * 209.99746 * 22 20 18 25 25 H 1.48496 * 109.46684 * 329.99169 * 22 20 18 26 26 C 1.54261 * 110.03372 * 181.42665 * 5 4 3 27 27 C 1.54969 * 104.16061 * 217.13933 * 26 5 4 28 28 C 1.54891 * 102.77803 * 37.88710 * 27 26 5 29 29 C 1.53879 * 110.03025 * 64.20918 * 5 4 3 30 30 H 1.09003 * 109.46836 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47498 * 300.00285 * 1 2 3 32 32 H 1.09000 * 109.47226 * 60.00253 * 1 2 3 33 33 H 1.08997 * 109.47109 * 300.00141 * 3 2 1 34 34 H 1.09004 * 109.47219 * 59.99626 * 3 2 1 35 35 H 1.08994 * 109.47234 * 295.77030 * 4 3 2 36 36 H 1.09004 * 109.46636 * 55.76960 * 4 3 2 37 37 H 0.97001 * 120.00289 * 354.76127 * 8 6 5 38 38 H 1.08999 * 110.03294 * 336.99944 * 11 9 8 39 39 H 1.09004 * 110.02790 * 98.37998 * 11 9 8 40 40 H 1.09000 * 110.03062 * 119.28370 * 12 11 9 41 41 H 1.08997 * 110.03436 * 240.71926 * 12 11 9 42 42 H 1.08997 * 110.48010 * 142.28569 * 13 12 11 43 43 H 1.09001 * 110.48559 * 264.92876 * 13 12 11 44 44 H 1.09007 * 109.47024 * 294.99312 * 16 14 9 45 45 H 1.09000 * 109.47050 * 54.99978 * 16 14 9 46 46 H 0.97001 * 120.00087 * 0.02562 * 17 16 14 47 47 H 0.96998 * 120.00137 * 180.02562 * 21 20 18 48 48 H 1.09005 * 110.48863 * 335.78741 * 26 5 4 49 49 H 1.08998 * 110.48686 * 98.42898 * 26 5 4 50 50 H 1.09000 * 110.72046 * 279.56952 * 27 26 5 51 51 H 1.09004 * 110.76545 * 156.22484 * 27 26 5 52 52 H 1.09001 * 110.48626 * 203.40661 * 28 27 26 53 53 H 1.08998 * 110.48527 * 80.75930 * 28 27 26 54 54 H 1.09002 * 110.03135 * 238.57107 * 29 5 4 55 55 H 1.09003 * 110.03311 * 359.97438 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1574 2.5785 -0.1059 6 6 3.6595 3.2721 -1.3478 7 8 3.1166 4.3531 -1.2622 8 7 3.8177 2.6909 -2.5535 9 6 3.2337 3.3085 -3.7466 10 1 3.2859 4.3950 -3.6771 11 6 1.7726 2.8491 -3.9321 12 6 1.5549 2.6765 -5.4455 13 6 2.8914 3.0364 -6.1269 14 6 3.9539 2.8088 -5.0235 15 1 4.2014 1.7507 -4.9385 16 6 5.2085 3.6401 -5.2988 17 7 5.9308 3.0711 -6.4394 18 6 7.0928 3.6517 -6.8726 19 1 7.4770 4.5289 -6.3733 20 6 7.7775 3.1123 -7.9529 21 7 8.8947 3.6701 -8.3691 22 14 7.1133 1.5946 -8.8162 23 1 6.2054 2.0082 -9.9160 24 1 8.2428 0.8092 -9.3755 25 1 6.3640 0.7599 -7.8430 26 6 5.6957 2.4693 -0.1424 27 6 6.1821 3.6927 0.6751 28 6 5.1401 3.7772 1.8180 29 6 3.8041 3.4100 1.1397 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8464 -0.8899 34 1 1.6885 1.8464 0.8900 35 1 3.8620 0.7109 0.9263 36 1 3.8523 0.5796 -0.8488 37 1 4.3184 1.8637 -2.6312 38 1 1.6120 1.8998 -3.4211 39 1 1.0912 3.6041 -3.5399 40 1 1.2886 1.6434 -5.6690 41 1 0.7678 3.3480 -5.7885 42 1 3.0757 2.3786 -6.9762 43 1 2.8891 4.0792 -6.4443 44 1 4.9214 4.6668 -5.5262 45 1 5.8520 3.6290 -4.4191 46 1 5.5855 2.2834 -6.8881 47 1 9.3729 3.2934 -9.1242 48 1 6.0236 1.5420 0.3274 49 1 6.0580 2.5269 -1.1688 50 1 6.1616 4.5964 0.0660 51 1 7.1809 3.5178 1.0751 52 1 5.0977 4.7888 2.2216 53 1 5.3778 3.0612 2.6047 54 1 3.2732 4.3156 0.8459 55 1 3.1891 2.8207 1.8199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268295280.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:07 Heat of formation + Delta-G solvation = -121.870899 kcal Electronic energy + Delta-G solvation = -31485.718771 eV Core-core repulsion = 27520.616367 eV Total energy + Delta-G solvation = -3965.102404 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.85178 -39.85518 -38.77409 -37.97440 -36.46305 -34.88952 -33.59020 -33.37101 -30.63580 -29.96431 -29.05790 -28.28630 -26.74735 -26.32970 -23.93878 -23.71480 -23.25177 -21.64756 -21.58917 -20.93557 -20.10210 -19.44798 -18.05549 -17.63357 -17.48998 -16.99437 -16.58329 -16.36455 -16.27221 -15.94673 -15.88969 -15.40247 -15.26434 -15.04044 -14.80717 -14.61821 -14.27667 -14.21829 -14.10949 -13.84948 -13.45274 -13.36798 -13.04920 -12.86175 -12.67463 -12.41056 -12.29843 -12.21981 -12.19563 -12.09833 -12.02152 -11.93808 -11.86204 -11.75748 -11.71776 -11.64452 -11.60025 -11.39721 -11.33279 -10.98987 -10.71202 -10.60820 -10.03411 -9.31974 -8.03681 -5.38067 1.37289 1.42194 1.49503 1.61148 2.15925 2.48145 2.71370 3.27309 3.31104 3.44268 3.53397 3.63571 3.74546 3.85853 3.91892 4.05298 4.07509 4.15455 4.29717 4.33996 4.42485 4.42725 4.44285 4.48124 4.49207 4.51204 4.53957 4.58770 4.60090 4.67481 4.72496 4.78685 4.83620 4.89914 4.91568 4.98161 5.01814 5.03699 5.05980 5.09960 5.17728 5.19156 5.23059 5.24884 5.27548 5.30501 5.45222 5.48427 5.61187 5.73456 6.16356 6.19760 6.54197 7.06651 7.23382 7.81065 8.03180 9.18139 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011141 B = 0.003241 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.538150 B = 8637.767835 C = 9943.387935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.059 3.941 4 C -0.097 4.097 5 C -0.071 4.071 6 C 0.524 3.476 7 O -0.577 6.577 8 N -0.712 5.712 9 C 0.152 3.848 10 H 0.070 0.930 11 C -0.123 4.123 12 C -0.112 4.112 13 C -0.116 4.116 14 C -0.096 4.096 15 H 0.093 0.907 16 C 0.167 3.833 17 N -0.751 5.751 18 C -0.238 4.238 19 H 0.049 0.951 20 C -0.064 4.064 21 N -0.986 5.986 22 Si 0.959 3.041 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.246 1.246 26 C -0.112 4.112 27 C -0.130 4.130 28 C -0.116 4.116 29 C -0.117 4.117 30 H 0.100 0.900 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.410 0.590 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.015 0.985 45 H 0.017 0.983 46 H 0.368 0.632 47 H 0.259 0.741 48 H 0.105 0.895 49 H 0.061 0.939 50 H 0.043 0.957 51 H 0.084 0.916 52 H 0.064 0.936 53 H 0.087 0.913 54 H 0.064 0.936 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.242 -9.375 21.549 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.017 4.017 4 C -0.135 4.135 5 C -0.075 4.075 6 C 0.312 3.688 7 O -0.457 6.457 8 N -0.363 5.363 9 C 0.047 3.953 10 H 0.088 0.912 11 C -0.162 4.162 12 C -0.150 4.150 13 C -0.154 4.154 14 C -0.115 4.115 15 H 0.112 0.888 16 C 0.041 3.959 17 N -0.397 5.397 18 C -0.369 4.369 19 H 0.067 0.933 20 C -0.255 4.255 21 N -0.636 5.636 22 Si 0.785 3.215 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.170 1.170 26 C -0.150 4.150 27 C -0.167 4.167 28 C -0.154 4.154 29 C -0.155 4.155 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.246 0.754 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.033 0.967 45 H 0.035 0.965 46 H 0.202 0.798 47 H 0.067 0.933 48 H 0.123 0.877 49 H 0.080 0.920 50 H 0.062 0.938 51 H 0.102 0.898 52 H 0.083 0.917 53 H 0.105 0.895 54 H 0.082 0.918 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.387 -8.620 21.620 29.661 hybrid contribution 0.269 -0.182 -1.117 1.163 sum -18.118 -8.801 20.503 28.742 Atomic orbital electron populations 1.22910 0.79805 1.03850 1.00528 1.87819 1.21134 1.28090 1.95526 1.22610 0.94432 0.84490 1.00175 1.21569 0.92602 0.93999 1.05297 1.21407 0.97639 0.95733 0.92691 1.20891 0.77548 0.84853 0.85509 1.90641 1.45507 1.22547 1.86960 1.45998 1.55766 1.28154 1.06355 1.21692 0.92944 0.97572 0.83124 0.91156 1.22431 0.94825 1.01626 0.97271 1.22053 0.96782 1.02640 0.93488 1.22328 0.94010 1.01814 0.97270 1.22463 0.94012 1.00302 0.94702 0.88841 1.20688 0.91480 0.95077 0.88673 1.42598 1.26307 1.33883 1.36943 1.19001 0.98970 1.08380 1.10551 0.93278 1.25565 0.97407 1.02873 0.99704 1.69901 1.19457 1.44436 1.29803 0.85356 0.77519 0.79626 0.78977 1.20302 1.22204 1.17034 1.22529 0.90695 1.00588 1.01148 1.22532 0.99856 0.97220 0.97113 1.22332 0.93417 1.02012 0.97624 1.22300 0.98823 0.99894 0.94458 0.88162 0.93257 0.94003 0.94654 0.92569 0.88094 0.89976 0.75363 0.90627 0.91981 0.90183 0.90754 0.91167 0.92134 0.96742 0.96503 0.79793 0.93263 0.87682 0.92003 0.93802 0.89759 0.91695 0.89457 0.91774 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.38 10.70 -148.98 -1.59 -8.98 16 3 C 0.06 1.02 5.47 71.98 0.39 1.41 16 4 C -0.10 -1.44 4.20 30.59 0.13 -1.31 16 5 C -0.07 -1.29 0.53 -52.20 -0.03 -1.32 16 6 C 0.52 13.00 4.97 87.66 0.44 13.44 16 7 O -0.58 -18.78 14.89 -3.02 -0.05 -18.82 16 8 N -0.71 -16.33 4.76 -437.45 -2.08 -18.41 16 9 C 0.15 3.89 2.65 46.07 0.12 4.02 16 10 H 0.07 2.19 7.51 -2.39 -0.02 2.17 16 11 C -0.12 -2.59 6.53 31.32 0.20 -2.39 16 12 C -0.11 -2.19 6.80 31.32 0.21 -1.98 16 13 C -0.12 -2.97 6.20 31.66 0.20 -2.78 16 14 C -0.10 -2.66 2.50 -9.51 -0.02 -2.68 16 15 H 0.09 2.40 8.02 -2.39 -0.02 2.38 16 16 C 0.17 6.43 5.70 86.38 0.49 6.93 16 17 N -0.75 -34.90 5.33 -343.43 -1.83 -36.72 16 18 C -0.24 -13.81 10.47 84.03 0.88 -12.92 16 19 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 20 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 21 N -0.99 -63.78 13.97 21.65 0.30 -63.48 16 22 Si 0.96 44.86 27.74 68.60 1.90 46.77 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.25 -10.13 6.52 99.48 0.65 -9.48 16 26 C -0.11 -1.89 5.89 31.69 0.19 -1.70 16 27 C -0.13 -2.34 6.91 31.91 0.22 -2.11 16 28 C -0.12 -1.80 6.83 31.67 0.22 -1.58 16 29 C -0.12 -2.09 5.58 31.32 0.17 -1.92 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.04 0.71 7.01 -2.39 -0.02 0.69 16 34 H 0.06 0.90 6.86 -2.39 -0.02 0.89 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.16 7.60 -2.38 -0.02 1.14 16 37 H 0.41 7.91 7.86 -92.71 -0.73 7.18 16 38 H 0.08 1.46 8.04 -2.39 -0.02 1.44 16 39 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.06 1.70 7.93 -2.39 -0.02 1.68 16 44 H 0.01 0.60 7.99 -2.38 -0.02 0.58 16 45 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.37 15.92 5.53 -92.71 -0.51 15.41 16 47 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 48 H 0.10 1.28 7.85 -2.38 -0.02 1.26 16 49 H 0.06 1.22 7.58 -2.39 -0.02 1.20 16 50 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.08 1.27 8.14 -2.38 -0.02 1.26 16 52 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 53 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 54 H 0.06 1.52 6.40 -2.39 -0.02 1.51 16 55 H 0.08 1.21 6.62 -2.39 -0.02 1.19 16 Total: -1.00 -73.91 420.88 1.74 -72.17 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: -0.44 Total: 36.14 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 5.53 Total: -8.66 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -3.61 Total: -118.61 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -1.64 Total: -27.80 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.77 kcal Total: -73.91 1.74 -72.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268295280.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.703 kcal (2) G-P(sol) polarization free energy of solvation -73.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds