Wall clock time and date at job start Tue Mar 31 2020 21:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47267 * 2 1 4 4 C 1.42900 * 114.00167 * 185.15190 * 3 2 1 5 5 H 1.08997 * 109.47184 * 340.82753 * 4 3 2 6 6 C 1.50700 * 109.47164 * 220.82418 * 4 3 2 7 7 O 1.21278 * 120.00292 * 352.44204 * 6 4 3 8 8 N 1.34778 * 119.99519 * 172.44466 * 6 4 3 9 9 C 1.46934 * 120.54986 * 175.40677 * 8 6 4 10 10 C 1.53340 * 108.68480 * 125.62002 * 9 8 6 11 11 C 1.52108 * 109.44288 * 53.30786 * 10 9 8 12 12 C 1.54385 * 110.50817 * 64.10274 * 11 10 9 13 13 C 1.54454 * 102.87775 * 152.62556 * 12 11 10 14 14 N 1.47091 * 107.29607 * 338.50186 * 13 12 11 15 15 C 1.36929 * 125.62982 * 178.98882 * 14 13 12 16 16 H 1.08006 * 120.00255 * 180.02562 * 15 14 13 17 17 C 1.38820 * 120.00127 * 0.02658 * 15 14 13 18 18 N 1.31617 * 119.99760 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00127 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47017 * 89.99623 * 19 17 15 21 21 H 1.48496 * 109.47286 * 209.99541 * 19 17 15 22 22 H 1.48502 * 109.47322 * 329.99961 * 19 17 15 23 23 C 1.47574 * 108.74041 * 359.00757 * 14 13 12 24 24 C 1.52103 * 111.60260 * 300.70050 * 11 10 9 25 25 C 1.46927 * 120.55869 * 355.38139 * 8 6 4 26 26 C 1.53002 * 109.46538 * 100.82502 * 4 3 2 27 27 C 1.53001 * 109.47355 * 295.95623 * 26 4 3 28 28 C 1.53002 * 109.47023 * 55.95920 * 26 4 3 29 29 H 1.08999 * 109.47453 * 299.99829 * 1 2 3 30 30 H 1.08999 * 109.47009 * 60.00131 * 1 2 3 31 31 H 1.09008 * 109.47489 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47381 * 239.99655 * 2 1 3 33 33 H 1.08999 * 109.47009 * 119.99869 * 2 1 3 34 34 H 1.08998 * 109.60331 * 5.86315 * 9 8 6 35 35 H 1.09003 * 109.60231 * 245.37922 * 9 8 6 36 36 H 1.08997 * 109.47768 * 293.32030 * 10 9 8 37 37 H 1.08995 * 109.47794 * 173.29985 * 10 9 8 38 38 H 1.09011 * 110.73236 * 34.27722 * 12 11 10 39 39 H 1.09000 * 110.73677 * 270.97807 * 12 11 10 40 40 H 1.08998 * 109.88082 * 97.92491 * 13 12 11 41 41 H 1.09004 * 109.88318 * 219.07984 * 13 12 11 42 42 H 0.97002 * 119.99872 * 180.02562 * 18 17 15 43 43 H 1.09003 * 110.37470 * 142.14179 * 23 14 13 44 44 H 1.09000 * 110.37848 * 264.49387 * 23 14 13 45 45 H 1.08998 * 109.47815 * 179.28243 * 24 11 10 46 46 H 1.09001 * 109.47682 * 299.29337 * 24 11 10 47 47 H 1.08999 * 109.59624 * 354.13870 * 25 8 6 48 48 H 1.08996 * 109.59762 * 114.60445 * 25 8 6 49 49 H 1.08998 * 109.47052 * 175.95516 * 26 4 3 50 50 H 1.09002 * 109.46536 * 66.48076 * 27 26 4 51 51 H 1.08996 * 109.46941 * 186.47804 * 27 26 4 52 52 H 1.08994 * 109.47017 * 306.48135 * 27 26 4 53 53 H 1.08999 * 109.47336 * 64.86313 * 28 26 4 54 54 H 1.09010 * 109.46697 * 184.85983 * 28 26 4 55 55 H 1.08997 * 109.47119 * 304.85999 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4259 1.4619 -0.1172 5 1 3.8905 0.5138 0.1536 6 6 3.9203 2.5456 0.8059 7 8 3.1272 3.2509 1.3927 8 7 5.2440 2.7309 0.9794 9 6 5.7412 3.8462 1.7966 10 6 6.6741 3.2859 2.8769 11 6 7.7484 2.4296 2.2237 12 6 8.6438 3.2911 1.3074 13 6 9.9856 2.5262 1.3196 14 7 10.0005 1.6885 2.5285 15 6 11.0093 0.8397 2.8984 16 1 10.9247 0.2647 3.8088 17 6 12.1407 0.7181 2.1034 18 7 12.2436 1.4184 0.9937 19 14 13.5172 -0.4393 2.6084 20 1 13.2699 -1.7846 2.0301 21 1 14.8132 0.0844 2.1071 22 1 13.5627 -0.5379 4.0894 23 6 8.7485 1.9134 3.2767 24 6 7.1443 1.2722 1.4433 25 6 6.2138 1.8208 0.3550 26 6 3.7914 1.8151 -1.5603 27 6 3.3794 0.6687 -2.4861 28 6 3.0588 3.0931 -1.9738 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.9015 4.3571 2.2677 35 1 6.2904 4.5453 1.1658 36 1 6.0985 2.6773 3.5742 37 1 7.1432 4.1096 3.4148 38 1 8.7669 4.2929 1.7193 39 1 8.2340 3.3354 0.2984 40 1 10.0621 1.8978 0.4323 41 1 10.8150 3.2330 1.3484 42 1 13.0340 1.3332 0.4380 43 1 8.3932 0.9791 3.7115 44 1 8.9004 2.6616 4.0547 45 1 7.9415 0.6906 0.9806 46 1 6.5755 0.6349 2.1204 47 1 5.6856 0.9965 -0.1242 48 1 6.7992 2.3635 -0.3871 49 1 4.8674 1.9730 -1.6343 50 1 2.2926 0.5859 -2.5001 51 1 3.7417 0.8681 -3.4946 52 1 3.8103 -0.2642 -2.1230 53 1 3.4161 3.9280 -1.3710 54 1 3.2507 3.2972 -3.0273 55 1 1.9877 2.9645 -1.8179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270329715.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:59 Heat of formation + Delta-G solvation = -82.152298 kcal Electronic energy + Delta-G solvation = -32018.883327 eV Core-core repulsion = 28055.503250 eV Total energy + Delta-G solvation = -3963.380077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.86529 -40.39546 -38.87171 -37.18640 -35.84563 -34.69132 -32.68577 -32.11931 -31.98447 -30.42207 -28.94392 -28.10249 -27.62341 -25.84661 -24.47323 -23.85488 -23.57567 -22.01743 -21.59904 -20.89774 -19.42543 -18.59465 -17.99428 -17.82580 -17.12967 -16.79138 -16.69448 -16.34890 -16.00791 -15.63962 -15.35055 -15.29005 -14.95068 -14.75660 -14.59434 -14.19408 -14.05431 -13.89291 -13.80583 -13.41333 -13.32699 -13.20266 -13.09659 -12.98616 -12.96502 -12.93972 -12.73476 -12.31724 -12.29429 -12.26935 -12.08175 -12.05404 -11.94817 -11.93000 -11.76295 -11.61225 -11.44309 -11.24389 -11.05226 -10.85258 -10.65989 -10.26574 -9.62551 -8.83293 -7.81741 -5.15637 1.46805 1.47821 1.54507 1.56370 1.77545 2.51336 2.80869 3.36183 3.41882 3.62111 3.67438 3.72200 3.77918 3.85422 3.95151 4.11716 4.14487 4.19237 4.25839 4.26933 4.34073 4.42589 4.48126 4.50210 4.59136 4.62775 4.69025 4.74175 4.81024 4.82259 4.83496 4.85406 4.89215 4.95093 4.98174 5.00121 5.03974 5.07751 5.15172 5.16332 5.20187 5.27864 5.37051 5.40341 5.43067 5.43716 5.49503 5.62042 5.75123 5.85450 6.13020 6.24148 6.40572 7.14290 7.15213 7.82689 8.47461 9.28220 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017544 B = 0.002752 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.579690 B =10171.532805 C =10542.386925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 O -0.376 6.376 4 C 0.079 3.921 5 H 0.103 0.897 6 C 0.512 3.488 7 O -0.571 6.571 8 N -0.601 5.601 9 C 0.117 3.883 10 C -0.106 4.106 11 C -0.057 4.057 12 C -0.120 4.120 13 C 0.190 3.810 14 N -0.623 5.623 15 C -0.238 4.238 16 H 0.077 0.923 17 C -0.064 4.064 18 N -0.949 5.949 19 Si 0.973 3.027 20 H -0.285 1.285 21 H -0.296 1.296 22 H -0.273 1.273 23 C 0.140 3.860 24 C -0.107 4.107 25 C 0.109 3.891 26 C -0.109 4.109 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.015 0.985 41 H -0.003 1.003 42 H 0.245 0.755 43 H 0.036 0.964 44 H 0.018 0.982 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.060 0.940 51 H 0.072 0.928 52 H 0.068 0.932 53 H 0.032 0.968 54 H 0.071 0.929 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.846 -1.499 -6.850 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.294 6.294 4 C 0.018 3.982 5 H 0.121 0.879 6 C 0.300 3.700 7 O -0.450 6.450 8 N -0.335 5.335 9 C -0.005 4.005 10 C -0.144 4.144 11 C -0.058 4.058 12 C -0.158 4.158 13 C 0.065 3.935 14 N -0.349 5.349 15 C -0.367 4.367 16 H 0.095 0.905 17 C -0.257 4.257 18 N -0.598 5.598 19 Si 0.802 3.198 20 H -0.212 1.212 21 H -0.223 1.223 22 H -0.198 1.198 23 C 0.015 3.985 24 C -0.145 4.145 25 C -0.013 4.013 26 C -0.128 4.128 27 C -0.203 4.203 28 C -0.194 4.194 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.033 0.967 41 H 0.016 0.984 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.036 0.964 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.123 0.877 48 H 0.103 0.897 49 H 0.113 0.887 50 H 0.079 0.921 51 H 0.091 0.909 52 H 0.087 0.913 53 H 0.051 0.949 54 H 0.090 0.910 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.207 -1.035 -6.582 22.229 hybrid contribution 1.550 -0.610 0.520 1.745 sum -19.657 -1.645 -6.061 20.636 Atomic orbital electron populations 1.21739 0.92886 1.03353 1.02520 1.22936 0.96532 0.82723 1.01256 1.88007 1.19066 1.27984 1.94391 1.22061 0.83784 0.97500 0.94864 0.87927 1.21012 0.81880 0.85305 0.81773 1.90657 1.55411 1.49092 1.49803 1.48135 1.04977 1.29971 1.50421 1.21614 0.97582 0.88394 0.92903 1.21632 0.95742 0.99641 0.97399 1.20922 0.93845 0.95554 0.95500 1.22793 0.95020 0.98053 0.99961 1.20890 0.92883 0.91223 0.88522 1.44783 1.17374 1.48566 1.24219 1.19402 0.95883 1.16155 1.05305 0.90490 1.25555 1.00640 1.01952 0.97558 1.70178 1.29080 1.45128 1.15416 0.85157 0.78555 0.78361 0.77736 1.21163 1.22273 1.19800 1.21667 0.85892 0.97280 0.93620 1.21553 0.98240 0.96952 0.97751 1.22047 0.90527 0.93529 0.95150 1.21654 1.01575 0.97546 0.92040 1.21890 1.02022 0.96910 0.99439 1.21665 1.00683 0.95848 1.01253 0.93156 0.91924 0.88898 0.90807 0.93305 0.90038 0.90057 0.91893 0.89844 0.91514 0.89867 0.96710 0.98429 0.94523 0.94568 0.96408 0.91676 0.91682 0.87660 0.89712 0.88741 0.92105 0.90939 0.91345 0.94910 0.91043 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.04 0.66 6.01 71.98 0.43 1.09 16 3 O -0.38 -8.61 8.37 -130.05 -1.09 -9.70 16 4 C 0.08 1.61 1.53 29.85 0.05 1.66 16 5 H 0.10 1.68 6.64 -2.39 -0.02 1.66 16 6 C 0.51 13.63 6.08 87.66 0.53 14.17 16 7 O -0.57 -20.02 15.92 15.90 0.25 -19.76 16 8 N -0.60 -14.20 2.96 -818.33 -2.42 -16.63 16 9 C 0.12 2.82 6.17 86.41 0.53 3.35 16 10 C -0.11 -2.68 4.84 30.41 0.15 -2.53 16 11 C -0.06 -1.74 0.55 -51.92 -0.03 -1.76 16 12 C -0.12 -3.99 4.92 31.56 0.16 -3.84 16 13 C 0.19 8.93 5.00 86.76 0.43 9.36 16 14 N -0.62 -30.95 3.39 -692.71 -2.35 -33.30 16 15 C -0.24 -13.15 10.28 84.04 0.86 -12.28 16 16 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 17 C -0.06 -3.59 5.49 84.86 0.47 -3.13 16 18 N -0.95 -56.02 10.31 21.65 0.22 -55.80 16 19 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.14 5.51 6.15 86.55 0.53 6.04 16 24 C -0.11 -2.92 4.85 30.41 0.15 -2.77 16 25 C 0.11 2.29 4.66 86.41 0.40 2.69 16 26 C -0.11 -1.79 2.40 -10.79 -0.03 -1.82 16 27 C -0.15 -1.74 7.91 71.98 0.57 -1.17 16 28 C -0.14 -2.63 8.80 71.98 0.63 -2.00 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.07 0.86 6.00 -2.39 -0.01 0.85 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 2.14 6.99 -2.39 -0.02 2.12 16 35 H 0.08 1.79 7.62 -2.39 -0.02 1.77 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 2.01 8.09 -2.39 -0.02 1.99 16 38 H 0.07 2.10 7.98 -2.38 -0.02 2.08 16 39 H 0.08 2.38 6.18 -2.39 -0.01 2.37 16 40 H 0.01 0.77 7.38 -2.39 -0.02 0.75 16 41 H 0.00 -0.14 7.50 -2.38 -0.02 -0.16 16 42 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 43 H 0.04 1.41 8.02 -2.39 -0.02 1.39 16 44 H 0.02 0.71 7.99 -2.39 -0.02 0.69 16 45 H 0.06 2.15 7.82 -2.39 -0.02 2.13 16 46 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.11 1.69 5.02 -2.39 -0.01 1.68 16 48 H 0.08 1.71 6.55 -2.39 -0.02 1.69 16 49 H 0.09 1.42 6.06 -2.39 -0.01 1.41 16 50 H 0.06 0.76 6.85 -2.39 -0.02 0.74 16 51 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.07 0.66 8.07 -2.39 -0.02 0.64 16 53 H 0.03 0.75 7.51 -2.39 -0.02 0.73 16 54 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 55 H 0.05 1.17 7.42 -2.39 -0.02 1.15 16 Total: -1.00 -71.59 404.72 4.08 -67.51 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.85 Total: 14.58 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 6.58 Total: 5.77 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -4.54 Total: -105.72 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.84 Total: -29.46 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.59 4.08 -67.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270329715.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.641 kcal (2) G-P(sol) polarization free energy of solvation -71.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds