Wall clock time and date at job start Tue Mar 31 2020 21:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47122 * 2 1 4 4 C 1.42904 * 113.99918 * 179.19250 * 3 2 1 5 5 H 1.08990 * 109.47104 * 13.46241 * 4 3 2 6 6 C 1.50700 * 109.47032 * 133.46303 * 4 3 2 7 7 O 1.21282 * 119.99933 * 10.43564 * 6 4 3 8 8 N 1.34780 * 119.99989 * 190.42862 * 6 4 3 9 9 C 1.46930 * 120.55036 * 185.22244 * 8 6 4 10 10 C 1.53342 * 108.68344 * 125.63299 * 9 8 6 11 11 C 1.52108 * 109.44380 * 53.30250 * 10 9 8 12 12 C 1.54394 * 110.50824 * 64.08923 * 11 10 9 13 13 C 1.54456 * 102.86693 * 83.33328 * 12 11 10 14 14 N 1.47083 * 107.30146 * 21.50378 * 13 12 11 15 15 C 1.36935 * 125.62870 * 180.96331 * 14 13 12 16 16 H 1.07999 * 119.99923 * 170.85153 * 15 14 13 17 17 C 1.38808 * 120.00017 * 350.85468 * 15 14 13 18 18 N 1.31620 * 120.00186 * 160.16007 * 17 15 14 19 19 Si 1.86800 * 120.00222 * 340.15851 * 17 15 14 20 20 H 1.48498 * 109.47524 * 185.43267 * 19 17 15 21 21 H 1.48502 * 109.47131 * 305.43521 * 19 17 15 22 22 H 1.48500 * 109.47121 * 65.43044 * 19 17 15 23 23 C 1.47572 * 108.73975 * 1.23016 * 14 13 12 24 24 C 1.52099 * 111.60015 * 300.69375 * 11 10 9 25 25 C 1.46925 * 120.54970 * 5.20596 * 8 6 4 26 26 C 1.53004 * 109.47079 * 253.46303 * 4 3 2 27 27 C 1.53004 * 109.47175 * 299.49448 * 26 4 3 28 28 C 1.53000 * 109.46902 * 59.49376 * 26 4 3 29 29 H 1.09005 * 109.47048 * 59.99607 * 1 2 3 30 30 H 1.08996 * 109.47126 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47158 * 300.00210 * 1 2 3 32 32 H 1.08998 * 109.46965 * 240.00190 * 2 1 3 33 33 H 1.08991 * 109.47062 * 120.00214 * 2 1 3 34 34 H 1.09000 * 109.60573 * 5.87228 * 9 8 6 35 35 H 1.09000 * 109.60120 * 245.38719 * 9 8 6 36 36 H 1.08996 * 109.47730 * 293.30963 * 10 9 8 37 37 H 1.09004 * 109.47464 * 173.29578 * 10 9 8 38 38 H 1.08996 * 110.73373 * 324.98641 * 12 11 10 39 39 H 1.08996 * 110.73138 * 201.67764 * 12 11 10 40 40 H 1.09001 * 109.87970 * 262.07516 * 13 12 11 41 41 H 1.09006 * 109.87986 * 140.93343 * 13 12 11 42 42 H 0.97002 * 119.99614 * 5.03773 * 18 17 15 43 43 H 1.09010 * 110.37628 * 95.26188 * 23 14 13 44 44 H 1.08995 * 110.37760 * 217.60561 * 23 14 13 45 45 H 1.08998 * 109.47878 * 179.29754 * 24 11 10 46 46 H 1.09005 * 109.47384 * 299.30991 * 24 11 10 47 47 H 1.08999 * 109.60495 * 354.11789 * 25 8 6 48 48 H 1.09001 * 109.60452 * 114.60401 * 25 8 6 49 49 H 1.08994 * 109.46906 * 179.49353 * 26 4 3 50 50 H 1.08993 * 109.47207 * 59.99585 * 27 26 4 51 51 H 1.08997 * 109.46687 * 180.02562 * 27 26 4 52 52 H 1.09002 * 109.46591 * 299.99807 * 27 26 4 53 53 H 1.09000 * 109.47316 * 56.01210 * 28 26 4 54 54 H 1.09001 * 109.46668 * 176.01082 * 28 26 4 55 55 H 1.09002 * 109.47164 * 296.00624 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0184 5 1 3.8749 0.4915 -0.2104 6 6 3.8681 2.4692 -1.0119 7 8 3.0452 3.1716 -1.5602 8 7 5.1735 2.5913 -1.3239 9 6 5.6268 3.6465 -2.2404 10 6 6.7266 4.4600 -1.5474 11 6 7.8142 3.5201 -1.0498 12 6 8.5044 2.8147 -2.2372 13 6 9.5513 3.8546 -2.6936 14 7 9.7956 4.7568 -1.5580 15 6 10.6469 5.8294 -1.5602 16 1 10.6491 6.5187 -0.7288 17 6 11.5069 6.0307 -2.6310 18 7 12.0310 7.2200 -2.8396 19 14 11.9207 4.6139 -3.7759 20 1 12.9524 5.0502 -4.7508 21 1 12.4412 3.4718 -2.9822 22 1 10.6973 4.1932 -4.5049 23 6 8.9768 4.3114 -0.4139 24 6 7.2638 2.4965 -0.0686 25 6 6.1670 1.6717 -0.7530 26 6 3.8884 1.9162 1.4053 27 6 3.2749 3.2818 1.7213 28 6 3.4334 0.8980 2.4528 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.7902 4.2997 -2.4885 35 1 6.0238 3.1953 -3.1498 36 1 6.3005 5.0020 -0.7032 37 1 7.1551 5.1691 -2.2557 38 1 7.7891 2.6118 -3.0341 39 1 8.9905 1.8956 -1.9102 40 1 9.1657 4.4214 -3.5410 41 1 10.4768 3.3508 -2.9726 42 1 11.8751 7.9367 -2.2049 43 1 9.5617 3.6684 0.2440 44 1 8.5941 5.1709 0.1363 45 1 8.0673 1.8350 0.2553 46 1 6.8453 3.0108 0.7965 47 1 5.6866 1.0231 -0.0205 48 1 6.6056 1.0679 -1.5475 49 1 4.9754 1.9936 1.4220 50 1 2.1878 3.2044 1.7046 51 1 3.6013 3.6068 2.7092 52 1 3.5991 4.0071 0.9750 53 1 3.8124 -0.0892 2.1885 54 1 3.8196 1.1856 3.4307 55 1 2.3442 0.8723 2.4856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270329799.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:04 Heat of formation + Delta-G solvation = -77.290131 kcal Electronic energy + Delta-G solvation = -32182.482062 eV Core-core repulsion = 28219.312825 eV Total energy + Delta-G solvation = -3963.169237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.92606 -40.50556 -38.87734 -37.36978 -35.86885 -34.86827 -33.02864 -32.36252 -31.99205 -30.63237 -29.08592 -28.10221 -27.79633 -25.42622 -24.33971 -24.12995 -23.64008 -22.38043 -21.66692 -20.98027 -19.81501 -18.81071 -18.19953 -17.85354 -17.08974 -17.06542 -16.76028 -16.61414 -16.11442 -15.55241 -15.48501 -15.22807 -15.07113 -14.87975 -14.75095 -14.61943 -14.29402 -14.01536 -13.78380 -13.55799 -13.32905 -13.26043 -13.15071 -13.05468 -13.03725 -12.92137 -12.86220 -12.52099 -12.31219 -12.21091 -12.06090 -11.96939 -11.89532 -11.71031 -11.61170 -11.55450 -11.51893 -11.30924 -10.91778 -10.85458 -10.52337 -10.24908 -9.64087 -9.12114 -8.62156 -5.43484 1.40672 1.50933 1.53830 1.72521 1.79348 2.55192 2.82030 3.09913 3.37146 3.42853 3.54219 3.68604 3.72901 3.80487 3.83923 4.06068 4.10996 4.15070 4.20892 4.22192 4.28213 4.32238 4.41953 4.46947 4.51654 4.55157 4.63459 4.65210 4.71162 4.74967 4.77563 4.81261 4.82270 4.89595 4.92410 4.93169 5.01591 5.04828 5.05602 5.08346 5.09942 5.16583 5.26681 5.28411 5.33718 5.38595 5.41948 5.47418 5.53988 5.61013 6.11249 6.15021 6.43654 6.85046 7.15621 7.49551 8.13515 8.87881 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025329 B = 0.002736 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.192105 B =10230.710447 C =10436.445671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.380 6.380 4 C 0.082 3.918 5 H 0.117 0.883 6 C 0.506 3.494 7 O -0.577 6.577 8 N -0.603 5.603 9 C 0.121 3.879 10 C -0.104 4.104 11 C -0.057 4.057 12 C -0.110 4.110 13 C 0.107 3.893 14 N -0.631 5.631 15 C -0.309 4.309 16 H 0.040 0.960 17 C -0.086 4.086 18 N -0.965 5.965 19 Si 1.111 2.889 20 H -0.316 1.316 21 H -0.282 1.282 22 H -0.248 1.248 23 C 0.140 3.860 24 C -0.112 4.112 25 C 0.100 3.900 26 C -0.104 4.104 27 C -0.140 4.140 28 C -0.142 4.142 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.023 0.977 41 H 0.021 0.979 42 H 0.244 0.756 43 H 0.036 0.964 44 H 0.023 0.977 45 H 0.104 0.896 46 H 0.070 0.930 47 H 0.115 0.885 48 H 0.095 0.905 49 H 0.101 0.899 50 H 0.050 0.950 51 H 0.067 0.933 52 H 0.024 0.976 53 H 0.076 0.924 54 H 0.069 0.931 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.407 -24.050 9.726 33.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.299 6.299 4 C 0.021 3.979 5 H 0.134 0.866 6 C 0.294 3.706 7 O -0.456 6.456 8 N -0.337 5.337 9 C -0.002 4.002 10 C -0.142 4.142 11 C -0.058 4.058 12 C -0.148 4.148 13 C -0.018 4.018 14 N -0.359 5.359 15 C -0.438 4.438 16 H 0.057 0.943 17 C -0.279 4.279 18 N -0.610 5.610 19 Si 0.939 3.061 20 H -0.245 1.245 21 H -0.209 1.209 22 H -0.173 1.173 23 C 0.016 3.984 24 C -0.150 4.150 25 C -0.021 4.021 26 C -0.123 4.123 27 C -0.198 4.198 28 C -0.200 4.200 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.122 0.878 46 H 0.089 0.911 47 H 0.133 0.867 48 H 0.113 0.887 49 H 0.119 0.881 50 H 0.070 0.930 51 H 0.086 0.914 52 H 0.044 0.956 53 H 0.095 0.905 54 H 0.088 0.912 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.149 -23.856 8.095 32.259 hybrid contribution -0.134 1.874 1.338 2.306 sum -20.282 -21.982 9.432 31.362 Atomic orbital electron populations 1.21752 0.93374 1.03331 1.02291 1.22913 0.96232 0.82592 1.01427 1.88032 1.18905 1.28185 1.94734 1.22107 0.83681 0.98379 0.93738 0.86570 1.21296 0.81902 0.84671 0.82687 1.90676 1.52942 1.47377 1.54575 1.48172 1.06395 1.32565 1.46528 1.21507 0.96490 0.89749 0.92407 1.21506 0.95065 0.97524 1.00135 1.20995 0.93344 0.95376 0.96061 1.22699 0.96689 0.97287 0.98110 1.22087 0.96893 0.91868 0.90910 1.44945 1.49362 1.31746 1.09817 1.19987 1.15541 1.01429 1.06884 0.94252 1.27164 0.96597 1.02833 1.01263 1.71049 1.52802 1.01339 1.35830 0.83368 0.76294 0.71927 0.74503 1.24540 1.20894 1.17277 1.21770 0.91084 0.95783 0.89807 1.21753 0.98904 0.97241 0.97151 1.22216 0.88999 0.91369 0.99503 1.21625 1.01528 0.96448 0.92711 1.21695 1.01058 0.96084 1.00920 1.21833 1.01757 0.98309 0.98053 0.93462 0.88760 0.92213 0.92817 0.90633 0.91294 0.89892 0.92892 0.92876 0.88901 0.88411 0.95863 0.96160 0.94657 0.94590 0.95828 0.87800 0.91103 0.86732 0.88679 0.88082 0.93043 0.91377 0.95643 0.90484 0.91238 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 16 2 C 0.04 0.56 5.98 71.98 0.43 0.99 16 3 O -0.38 -7.78 8.40 -130.15 -1.09 -8.87 16 4 C 0.08 1.38 1.56 29.85 0.05 1.42 16 5 H 0.12 1.13 6.62 -2.39 -0.02 1.12 16 6 C 0.51 12.43 5.74 87.66 0.50 12.94 16 7 O -0.58 -20.20 15.96 15.79 0.25 -19.95 16 8 N -0.60 -12.49 2.96 -818.30 -2.42 -14.91 16 9 C 0.12 3.06 6.11 86.41 0.53 3.59 16 10 C -0.10 -3.03 4.87 30.41 0.15 -2.88 16 11 C -0.06 -1.49 0.55 -51.84 -0.03 -1.52 16 12 C -0.11 -2.89 4.92 31.56 0.16 -2.74 16 13 C 0.11 4.25 4.21 86.76 0.37 4.62 16 14 N -0.63 -29.96 3.31 -692.30 -2.29 -32.25 16 15 C -0.31 -18.22 10.51 84.03 0.88 -17.34 16 16 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 17 C -0.09 -5.24 5.48 84.86 0.47 -4.77 16 18 N -0.97 -63.70 13.70 21.65 0.30 -63.41 16 19 Si 1.11 54.13 24.67 68.60 1.69 55.83 16 20 H -0.32 -15.99 7.11 99.48 0.71 -15.28 16 21 H -0.28 -12.77 7.05 99.48 0.70 -12.07 16 22 H -0.25 -10.56 5.31 99.48 0.53 -10.03 16 23 C 0.14 5.17 6.16 86.63 0.53 5.70 16 24 C -0.11 -1.85 4.71 30.41 0.14 -1.71 16 25 C 0.10 1.28 5.28 86.42 0.46 1.74 16 26 C -0.10 -1.44 2.47 -10.79 -0.03 -1.47 16 27 C -0.14 -2.78 8.80 71.98 0.63 -2.14 16 28 C -0.14 -1.28 8.03 71.98 0.58 -0.70 16 29 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.59 6.69 -2.39 -0.02 0.57 16 34 H 0.07 2.06 7.02 -2.39 -0.02 2.04 16 35 H 0.08 1.89 6.55 -2.39 -0.02 1.88 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.90 7.82 -2.38 -0.02 1.88 16 38 H 0.09 2.05 6.17 -2.39 -0.01 2.03 16 39 H 0.10 2.04 7.98 -2.39 -0.02 2.02 16 40 H 0.02 1.01 7.01 -2.39 -0.02 1.00 16 41 H 0.02 0.86 3.97 -2.38 -0.01 0.85 16 42 H 0.24 16.26 8.73 -92.71 -0.81 15.45 16 43 H 0.04 1.26 8.00 -2.38 -0.02 1.24 16 44 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 45 H 0.10 1.32 8.09 -2.39 -0.02 1.30 16 46 H 0.07 1.19 7.56 -2.38 -0.02 1.17 16 47 H 0.11 0.78 4.62 -2.39 -0.01 0.77 16 48 H 0.10 0.94 7.62 -2.39 -0.02 0.92 16 49 H 0.10 1.14 5.52 -2.39 -0.01 1.12 16 50 H 0.05 1.14 7.70 -2.39 -0.02 1.12 16 51 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.02 0.64 7.20 -2.39 -0.02 0.62 16 53 H 0.08 0.36 8.10 -2.39 -0.02 0.34 16 54 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 55 H 0.05 0.61 7.08 -2.39 -0.02 0.59 16 Total: -1.00 -82.54 397.27 3.62 -78.92 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.63 Total: 9.98 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 6.56 Total: -5.33 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -4.42 Total: -110.57 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.84 Total: -28.83 kcal Atomic # 14 Polarization: 54.13 SS G_CDS: 1.69 Total: 55.83 kcal Total: -82.54 3.62 -78.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270329799.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.627 kcal (2) G-P(sol) polarization free energy of solvation -82.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds