Wall clock time and date at job start Tue Mar 31 2020 22:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.46938 * 2 1 4 4 C 1.42901 * 113.99870 * 175.30838 * 3 2 1 5 5 H 1.08998 * 109.47015 * 337.67103 * 4 3 2 6 6 C 1.53001 * 109.46868 * 217.67182 * 4 3 2 7 7 C 1.50705 * 109.47070 * 64.99958 * 6 4 3 8 8 O 1.21278 * 120.00040 * 359.97438 * 7 6 4 9 9 N 1.30780 * 119.99628 * 179.97438 * 7 6 4 10 10 C 1.44963 * 123.94956 * 358.30846 * 9 7 6 11 11 C 1.44483 * 112.76808 * 267.77386 * 10 9 7 12 12 C 1.48441 * 115.05213 * 290.65368 * 11 10 9 13 13 H 1.13976 * 112.12189 * 180.38301 * 12 11 10 14 14 C 1.54785 * 109.57758 * 303.15140 * 12 11 10 15 15 C 1.59774 * 103.10346 * 90.76305 * 14 12 11 16 16 C 1.52105 * 104.09238 * 12.96107 * 15 14 12 17 17 H 1.14545 * 109.56759 * 123.30486 * 16 15 14 18 18 C 1.48659 * 113.80735 * 240.40465 * 16 15 14 19 19 N 1.47545 * 114.29537 * 5.08930 * 16 15 14 20 20 C 1.32991 * 131.66644 * 154.37110 * 19 16 15 21 21 H 1.08003 * 119.99694 * 186.21181 * 20 19 16 22 22 C 1.38808 * 120.00144 * 6.21410 * 20 19 16 23 23 N 1.31625 * 119.99927 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00175 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46854 * 60.00012 * 24 22 20 26 26 H 1.48504 * 109.47160 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47191 * 300.00336 * 24 22 20 28 28 C 1.52999 * 109.47289 * 97.67503 * 4 3 2 29 29 C 1.53000 * 109.47115 * 182.59660 * 28 4 3 30 30 C 1.53005 * 109.46822 * 302.59477 * 28 4 3 31 31 H 1.09001 * 109.47237 * 59.99618 * 1 2 3 32 32 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47195 * 300.00195 * 1 2 3 34 34 H 1.08997 * 109.47089 * 240.00300 * 2 1 3 35 35 H 1.08994 * 109.47181 * 119.99979 * 2 1 3 36 36 H 1.08996 * 109.47435 * 304.99554 * 6 4 3 37 37 H 1.09004 * 109.47196 * 184.99504 * 6 4 3 38 38 H 1.07853 * 105.16783 * 27.23728 * 10 9 7 39 39 H 1.06097 * 106.24100 * 146.19654 * 10 9 7 40 40 H 1.17196 * 109.05867 * 55.02082 * 11 10 9 41 41 H 1.05935 * 109.91869 * 168.50373 * 11 10 9 42 42 H 1.10748 * 108.79378 * 207.71951 * 14 12 11 43 43 H 1.03128 * 109.58676 * 332.73302 * 14 12 11 44 44 H 1.09183 * 106.78251 * 255.79491 * 15 14 12 45 45 H 1.06037 * 110.64272 * 132.88448 * 15 14 12 46 46 H 1.14051 * 114.19342 * 326.21739 * 18 16 15 47 47 H 1.11455 * 113.69186 * 197.75337 * 18 16 15 48 48 H 0.97000 * 119.99772 * 179.97438 * 23 22 20 49 49 H 1.08993 * 109.47368 * 62.59438 * 28 4 3 50 50 H 1.09003 * 109.47172 * 59.99798 * 29 28 4 51 51 H 1.09001 * 109.47237 * 179.97438 * 29 28 4 52 52 H 1.09000 * 109.47486 * 299.99589 * 29 28 4 53 53 H 1.09001 * 109.46945 * 65.46704 * 30 28 4 54 54 H 1.09005 * 109.46653 * 185.46288 * 30 28 4 55 55 H 1.09000 * 109.46868 * 305.46095 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4268 1.4616 0.1068 5 1 3.8316 0.5541 0.5547 6 6 3.7769 2.6641 0.9855 7 6 3.2900 2.4184 2.3904 8 8 2.7186 1.3837 2.6619 9 7 3.4835 3.3211 3.3167 10 6 4.1855 4.5700 3.0959 11 6 5.5967 4.4781 3.3921 12 6 5.9281 4.3208 4.8305 13 1 7.0524 4.2605 5.0078 14 6 5.3211 5.4961 5.6342 15 6 3.8808 4.9443 6.0511 16 6 3.9524 3.4556 5.7472 17 1 3.7144 2.8586 6.6953 18 6 2.9529 2.9988 4.7461 19 7 5.2817 2.9888 5.3088 20 6 5.8674 1.7969 5.3786 21 1 6.9005 1.6848 5.0843 22 6 5.1511 0.6968 5.8297 23 7 3.8922 0.8334 6.1889 24 14 5.9736 -0.9775 5.9271 25 1 7.1368 -0.9048 6.8475 26 1 5.0015 -1.9778 6.4367 27 1 6.4368 -1.3808 4.5751 28 6 4.0290 1.6553 -1.2863 29 6 5.5541 1.7129 -1.1790 30 6 3.6247 0.4842 -2.1841 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.2979 3.5579 0.5860 37 1 4.8578 2.8046 0.9951 38 1 4.0480 4.7898 2.0490 39 1 3.7156 5.2888 3.7190 40 1 6.0616 3.5994 2.7715 41 1 6.0977 5.3398 3.0332 42 1 5.9399 5.6687 6.5363 43 1 5.2340 6.3234 5.0245 44 1 3.1544 5.4365 5.4014 45 1 3.6954 5.1229 7.0797 46 1 1.9597 3.5579 4.7885 47 1 2.7869 1.8967 4.7497 48 1 3.3915 0.0646 6.5038 49 1 3.6596 2.5866 -1.7155 50 1 5.9236 0.7815 -0.7498 51 1 5.9833 1.8505 -2.1715 52 1 5.8423 2.5472 -0.5395 53 1 2.5459 0.5010 -2.3392 54 1 4.1314 0.5715 -3.1452 55 1 3.9088 -0.4539 -1.7073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270484296.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:31 Heat of formation + Delta-G solvation = -42.420384 kcal Electronic energy + Delta-G solvation = -33329.270761 eV Core-core repulsion = 29367.613589 eV Total energy + Delta-G solvation = -3961.657171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.51085 -40.07044 -38.80339 -36.08781 -35.86621 -34.61066 -33.41757 -32.49054 -31.25892 -30.97505 -28.85429 -27.90627 -27.24631 -25.71362 -24.85194 -23.67107 -23.28657 -21.28686 -21.05567 -20.93473 -19.25910 -18.53105 -17.99636 -17.65009 -16.87680 -16.79676 -16.60710 -16.07627 -16.04340 -15.60204 -15.25328 -14.92340 -14.76181 -14.64550 -14.33826 -14.28553 -13.95284 -13.59699 -13.55902 -13.37683 -13.12241 -13.03761 -12.99835 -12.93362 -12.90665 -12.72414 -12.64717 -12.57601 -12.44650 -12.22691 -12.11601 -11.98523 -11.86412 -11.61542 -11.50970 -11.37430 -11.23120 -11.08777 -10.93526 -10.69704 -10.26782 -10.03435 -9.28140 -8.85505 -7.68746 -4.94035 1.38735 1.41786 1.46512 2.11965 2.43015 2.54524 2.79578 3.43601 3.50918 3.71212 3.75918 3.78697 3.93654 4.03058 4.13742 4.14773 4.20240 4.27647 4.36856 4.39249 4.40890 4.46226 4.47441 4.51499 4.58404 4.66915 4.67950 4.75635 4.78987 4.86926 4.89662 4.91417 4.95436 4.97519 5.01464 5.07374 5.17064 5.18792 5.19319 5.23710 5.27757 5.37970 5.38406 5.39659 5.41990 5.45911 5.59169 5.67929 5.80478 5.96699 6.26449 6.37878 7.09060 7.18212 7.75144 7.80402 8.71916 9.37192 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.004752 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.782965 B = 5891.233354 C = 6674.020235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.059 3.941 3 O -0.385 6.385 4 C 0.115 3.885 5 H 0.030 0.970 6 C -0.136 4.136 7 C 0.499 3.501 8 O -0.604 6.604 9 N -0.600 5.600 10 C 0.126 3.874 11 C -0.131 4.131 12 C 0.111 3.889 13 H 0.053 0.947 14 C -0.109 4.109 15 C -0.112 4.112 16 C 0.150 3.850 17 H 0.047 0.953 18 C 0.121 3.879 19 N -0.587 5.587 20 C -0.187 4.187 21 H 0.074 0.926 22 C -0.072 4.072 23 N -0.933 5.933 24 Si 0.952 3.048 25 H -0.278 1.278 26 H -0.305 1.305 27 H -0.296 1.296 28 C -0.106 4.106 29 C -0.147 4.147 30 C -0.146 4.146 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.016 0.984 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.033 0.967 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.031 0.969 47 H 0.090 0.910 48 H 0.236 0.764 49 H 0.089 0.911 50 H 0.041 0.959 51 H 0.079 0.921 52 H 0.062 0.938 53 H 0.058 0.942 54 H 0.076 0.924 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 11.118 -14.304 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.018 4.018 3 O -0.305 6.305 4 C 0.056 3.944 5 H 0.048 0.952 6 C -0.175 4.175 7 C 0.286 3.714 8 O -0.488 6.488 9 N -0.331 5.331 10 C 0.004 3.996 11 C -0.170 4.170 12 C 0.008 3.992 13 H 0.072 0.928 14 C -0.148 4.148 15 C -0.151 4.151 16 C 0.044 3.956 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.310 5.310 20 C -0.318 4.318 21 H 0.091 0.909 22 C -0.265 4.265 23 N -0.585 5.585 24 Si 0.784 3.216 25 H -0.205 1.205 26 H -0.232 1.232 27 H -0.224 1.224 28 C -0.125 4.125 29 C -0.204 4.204 30 C -0.203 4.203 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.123 0.877 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.108 0.892 48 H 0.046 0.954 49 H 0.107 0.893 50 H 0.060 0.940 51 H 0.098 0.902 52 H 0.081 0.919 53 H 0.077 0.923 54 H 0.094 0.906 55 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.057 10.475 -14.168 17.620 hybrid contribution 0.522 -2.069 0.712 2.249 sum 0.579 8.407 -13.456 15.877 Atomic orbital electron populations 1.21688 0.92988 1.02892 1.02268 1.22578 0.96227 0.83803 0.99154 1.87764 1.21446 1.26922 1.94353 1.21827 0.81470 0.96420 0.94649 0.95185 1.22010 1.03077 1.00670 0.91760 1.19796 0.79999 0.83255 0.88330 1.90635 1.46551 1.28397 1.83189 1.49455 1.53636 1.18823 1.11185 1.19314 0.92497 0.85687 1.02111 1.20318 0.96973 1.02534 0.97190 1.23170 0.96120 0.86476 0.93417 0.92840 1.22889 0.95191 0.96902 0.99786 1.22584 0.98457 0.92717 1.01318 1.20503 0.85559 0.93247 0.96332 0.93572 1.25164 0.92830 1.02703 0.79194 1.45358 1.10716 1.02890 1.72062 1.18198 0.94860 0.84947 1.33837 0.90857 1.25105 0.96777 0.99618 1.05018 1.69795 1.08376 1.28228 1.52099 0.85507 0.77117 0.81950 0.76992 1.20462 1.23199 1.22353 1.21558 0.96332 1.00726 0.93875 1.21890 0.93827 1.01719 1.02981 1.21891 1.01713 0.96978 0.99723 0.90729 0.89693 0.94122 0.91625 0.96589 0.87075 0.87274 0.89514 0.89302 0.94859 0.88188 0.91228 0.87739 0.89888 0.90691 0.95115 0.89234 0.95447 0.89254 0.94000 0.90197 0.91896 0.92312 0.90556 0.93936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 10.28 71.98 0.74 -3.13 16 2 C 0.06 1.91 6.01 71.98 0.43 2.34 16 3 O -0.39 -13.45 8.87 -135.18 -1.20 -14.65 16 4 C 0.11 3.71 1.42 30.59 0.04 3.76 16 5 H 0.03 1.18 7.45 -2.39 -0.02 1.16 16 6 C -0.14 -4.35 3.81 29.85 0.11 -4.23 16 7 C 0.50 21.81 7.47 88.27 0.66 22.47 16 8 O -0.60 -32.87 14.37 10.77 0.15 -32.71 16 9 N -0.60 -24.13 2.65 -823.08 -2.18 -26.31 16 10 C 0.13 3.60 5.11 84.10 0.43 4.03 16 11 C -0.13 -3.74 4.54 26.58 0.12 -3.62 16 12 C 0.11 3.79 3.75 42.30 0.16 3.95 16 13 H 0.05 1.85 8.55 0.39 0.00 1.85 16 14 C -0.11 -2.86 6.47 33.67 0.22 -2.64 16 15 C -0.11 -3.52 6.24 32.77 0.20 -3.32 16 16 C 0.15 6.68 2.23 43.12 0.10 6.78 16 17 H 0.05 2.56 6.61 0.73 0.00 2.56 16 18 C 0.12 5.72 5.45 83.09 0.45 6.18 16 19 N -0.59 -27.77 2.41 -631.16 -1.52 -29.29 16 20 C -0.19 -10.29 10.27 84.65 0.87 -9.42 16 21 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 22 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16 23 N -0.93 -57.11 8.32 21.65 0.18 -56.93 16 24 Si 0.95 49.19 29.55 68.60 2.03 51.22 16 25 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.31 -16.28 7.11 99.48 0.71 -15.57 16 27 H -0.30 -15.35 7.11 99.48 0.71 -14.65 16 28 C -0.11 -2.46 2.71 -10.79 -0.03 -2.48 16 29 C -0.15 -3.02 8.91 71.98 0.64 -2.37 16 30 C -0.15 -3.06 7.75 71.98 0.56 -2.50 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.78 5.55 -2.39 -0.01 1.77 16 35 H 0.02 0.63 8.00 -2.39 -0.02 0.61 16 36 H 0.11 2.96 7.54 -2.39 -0.02 2.94 16 37 H 0.11 3.15 5.83 -2.38 -0.01 3.14 16 38 H 0.09 1.99 6.25 -2.99 -0.02 1.97 16 39 H 0.09 2.28 4.68 -3.88 -0.02 2.26 16 40 H 0.03 1.12 8.38 2.36 0.02 1.14 16 41 H 0.10 2.00 7.88 -3.96 -0.03 1.97 16 42 H 0.07 1.78 8.29 -1.44 -0.01 1.77 16 43 H 0.10 1.98 7.19 -5.31 -0.04 1.94 16 44 H 0.08 2.23 6.22 -2.29 -0.01 2.21 16 45 H 0.07 2.24 7.89 -3.91 -0.03 2.21 16 46 H 0.03 1.34 8.45 0.44 0.00 1.35 16 47 H 0.09 5.33 4.66 -1.05 0.00 5.33 16 48 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 49 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.06 1.24 6.39 -2.39 -0.02 1.23 16 53 H 0.06 1.26 6.57 -2.39 -0.02 1.24 16 54 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 55 H 0.04 0.97 7.91 -2.39 -0.02 0.95 16 Total: -1.00 -76.72 398.82 4.56 -72.15 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.92 Total: 24.49 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 6.17 Total: 12.01 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -3.52 Total: -112.52 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -1.04 Total: -47.36 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.03 Total: 51.22 kcal Total: -76.72 4.56 -72.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270484296.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.734 kcal (2) G-P(sol) polarization free energy of solvation -76.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds