Wall clock time and date at job start Tue Mar 31 2020 22:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46978 * 2 1 4 4 C 1.42901 * 113.99793 * 184.86434 * 3 2 1 5 5 H 1.08993 * 109.47537 * 22.32949 * 4 3 2 6 6 C 1.53004 * 109.46890 * 142.32778 * 4 3 2 7 7 C 1.50698 * 109.47066 * 294.99778 * 6 4 3 8 8 O 1.21280 * 120.00137 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99626 * 180.02562 * 7 6 4 10 10 C 1.44791 * 120.18629 * 359.72115 * 9 7 6 11 11 C 1.50997 * 112.52036 * 264.68364 * 10 9 7 12 12 C 1.51319 * 113.24837 * 285.42662 * 11 10 9 13 13 H 1.08992 * 111.31760 * 185.14794 * 12 11 10 14 14 C 1.54720 * 106.48095 * 307.57608 * 12 11 10 15 15 C 1.54241 * 104.37556 * 89.11586 * 14 12 11 16 16 C 1.50871 * 105.27186 * 11.56333 * 15 14 12 17 17 H 1.09003 * 105.89876 * 122.20336 * 16 15 14 18 18 C 1.49822 * 120.17768 * 179.97438 * 9 7 6 19 19 N 1.48058 * 109.91059 * 7.86879 * 16 15 14 20 20 C 1.36932 * 127.84023 * 155.15816 * 19 16 15 21 21 H 1.08001 * 119.99927 * 180.02562 * 20 19 16 22 22 C 1.38813 * 120.00308 * 0.02957 * 20 19 16 23 23 N 1.31623 * 119.99666 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00245 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47432 * 59.99993 * 24 22 20 26 26 H 1.48497 * 109.47263 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46901 * 299.99782 * 24 22 20 28 28 C 1.52998 * 109.47026 * 262.32516 * 4 3 2 29 29 C 1.53005 * 109.47169 * 177.35783 * 28 4 3 30 30 C 1.53000 * 109.47171 * 57.36218 * 28 4 3 31 31 H 1.08995 * 109.47286 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47355 * 300.00255 * 1 2 3 33 33 H 1.09003 * 109.47646 * 59.99800 * 1 2 3 34 34 H 1.09002 * 109.47034 * 240.00453 * 2 1 3 35 35 H 1.08996 * 109.47297 * 120.00284 * 2 1 3 36 36 H 1.08996 * 109.47137 * 55.00039 * 6 4 3 37 37 H 1.09007 * 109.46968 * 174.99742 * 6 4 3 38 38 H 1.09005 * 108.92379 * 25.28915 * 10 9 7 39 39 H 1.08995 * 108.93492 * 143.87318 * 10 9 7 40 40 H 1.08997 * 108.80006 * 164.40943 * 11 10 9 41 41 H 1.08999 * 108.66057 * 46.34892 * 11 10 9 42 42 H 1.08999 * 110.44980 * 207.83426 * 14 12 11 43 43 H 1.08999 * 110.45157 * 330.26768 * 14 12 11 44 44 H 1.09003 * 110.27791 * 252.61530 * 15 14 12 45 45 H 1.08993 * 110.28658 * 130.51457 * 15 14 12 46 46 H 1.08997 * 109.55056 * 270.53490 * 18 9 7 47 47 H 1.08997 * 109.54340 * 30.71958 * 18 9 7 48 48 H 0.96999 * 119.99795 * 180.02562 * 23 22 20 49 49 H 1.08999 * 109.47672 * 297.35890 * 28 4 3 50 50 H 1.09007 * 109.46636 * 60.00021 * 29 28 4 51 51 H 1.08999 * 109.46910 * 300.00574 * 29 28 4 52 52 H 1.08997 * 109.47105 * 180.02562 * 29 28 4 53 53 H 1.08998 * 109.46952 * 174.46619 * 30 28 4 54 54 H 1.09005 * 109.46704 * 294.46867 * 30 28 4 55 55 H 1.08997 * 109.47413 * 54.46288 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4264 1.4617 -0.1107 5 1 3.8300 0.5547 -0.5606 6 6 3.7741 2.6651 -0.9893 7 6 3.2832 2.4208 -2.3930 8 8 2.7111 1.3863 -2.6639 9 7 3.4800 3.3520 -3.3472 10 6 4.1572 4.5910 -3.0267 11 6 3.1951 5.7089 -2.7027 12 6 2.5010 6.2721 -3.9236 13 1 1.8844 7.1334 -3.6668 14 6 3.6153 6.6351 -4.9337 15 6 3.8233 5.3456 -5.7542 16 6 2.6641 4.4515 -5.3898 17 1 2.1544 4.2266 -6.3267 18 6 2.9941 3.1132 -4.7442 19 7 1.6924 5.1988 -4.5594 20 6 0.3529 4.9564 -4.4109 21 1 -0.2419 5.5875 -3.7673 22 6 -0.2405 3.8996 -5.0876 23 7 0.4846 3.1301 -5.8716 24 14 -2.0676 3.5686 -4.8845 25 1 -2.8385 4.7572 -5.3292 26 1 -2.4521 2.3929 -5.7061 27 1 -2.3647 3.2919 -3.4560 28 6 4.0325 1.6540 1.2809 29 6 5.5575 1.7105 1.1696 30 6 3.6299 0.4826 2.1789 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.2961 3.5585 -0.5875 37 1 4.8550 2.8057 -1.0016 38 1 4.8053 4.4272 -2.1658 39 1 4.7702 4.8892 -3.8771 40 1 3.7430 6.5121 -2.2100 41 1 2.4397 5.3303 -2.0142 42 1 3.2919 7.4503 -5.5810 43 1 4.5312 6.9069 -4.4090 44 1 4.7663 4.8720 -5.4810 45 1 3.8071 5.5696 -6.8207 46 1 3.7720 2.6119 -5.3202 47 1 2.1007 2.4894 -4.7178 48 1 0.0699 2.3918 -6.3447 49 1 3.6650 2.5853 1.7118 50 1 5.8444 2.5451 0.5297 51 1 5.9250 0.7793 0.7386 52 1 5.9893 1.8471 2.1610 53 1 4.1402 0.5682 3.1382 54 1 2.5516 0.5007 2.3380 55 1 3.9108 -0.4555 1.7003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270484297.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:35 Heat of formation + Delta-G solvation = -68.332375 kcal Electronic energy + Delta-G solvation = -33184.272365 eV Core-core repulsion = 29221.491565 eV Total energy + Delta-G solvation = -3962.780800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.49398 -40.21922 -38.92009 -36.05028 -35.76199 -34.76083 -33.29180 -32.47521 -31.26270 -31.01734 -28.60601 -27.85211 -27.42712 -25.90588 -24.89578 -23.70908 -23.19644 -21.25308 -21.01552 -20.91093 -19.52173 -18.72940 -18.00471 -17.82788 -16.99248 -16.77674 -16.61150 -16.14973 -16.10754 -15.68324 -15.21852 -15.12724 -14.78894 -14.54164 -14.31972 -14.11080 -13.97477 -13.72367 -13.47744 -13.33462 -13.09122 -13.03311 -12.96944 -12.90674 -12.89666 -12.71935 -12.65870 -12.57695 -12.49073 -12.32003 -12.11513 -12.03799 -11.88098 -11.58377 -11.55792 -11.47733 -11.39868 -11.26296 -10.91089 -10.68347 -10.30852 -10.19957 -9.26188 -8.77818 -7.75443 -5.11029 1.37947 1.42618 1.46087 1.90550 2.37150 2.49413 2.81428 3.36268 3.61347 3.71135 3.78584 3.98607 4.03144 4.10369 4.13311 4.17046 4.21157 4.27120 4.29754 4.38147 4.43767 4.48105 4.51327 4.52063 4.63420 4.71372 4.77560 4.78879 4.85116 4.87273 4.90597 4.93947 4.97050 4.98376 5.04607 5.07148 5.14175 5.17455 5.19267 5.25950 5.29549 5.38077 5.41318 5.42955 5.46964 5.52252 5.64828 5.74781 5.93801 6.04927 6.35280 6.41991 6.87562 7.15500 7.53156 7.83038 8.55274 9.27146 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.004957 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.261457 B = 5647.370033 C = 7408.867519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 O -0.397 6.397 4 C 0.110 3.890 5 H 0.050 0.950 6 C -0.131 4.131 7 C 0.496 3.504 8 O -0.595 6.595 9 N -0.596 5.596 10 C 0.101 3.899 11 C -0.143 4.143 12 C 0.135 3.865 13 H 0.057 0.943 14 C -0.114 4.114 15 C -0.117 4.117 16 C 0.153 3.847 17 H 0.048 0.952 18 C 0.133 3.867 19 N -0.601 5.601 20 C -0.212 4.212 21 H 0.072 0.928 22 C -0.060 4.060 23 N -0.932 5.932 24 Si 0.958 3.042 25 H -0.274 1.274 26 H -0.298 1.298 27 H -0.295 1.295 28 C -0.108 4.108 29 C -0.146 4.146 30 C -0.147 4.147 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.136 0.864 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.024 0.976 42 H 0.060 0.940 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.030 0.970 47 H 0.071 0.929 48 H 0.240 0.760 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.054 0.946 52 H 0.075 0.925 53 H 0.074 0.926 54 H 0.050 0.950 55 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.665 1.635 13.503 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 O -0.317 6.317 4 C 0.052 3.948 5 H 0.069 0.931 6 C -0.170 4.170 7 C 0.285 3.715 8 O -0.476 6.476 9 N -0.327 5.327 10 C -0.022 4.022 11 C -0.184 4.184 12 C 0.029 3.971 13 H 0.075 0.925 14 C -0.153 4.153 15 C -0.155 4.155 16 C 0.046 3.954 17 H 0.066 0.934 18 C 0.010 3.990 19 N -0.324 5.324 20 C -0.342 4.342 21 H 0.090 0.910 22 C -0.253 4.253 23 N -0.582 5.582 24 Si 0.789 3.211 25 H -0.200 1.200 26 H -0.224 1.224 27 H -0.223 1.223 28 C -0.127 4.127 29 C -0.203 4.203 30 C -0.204 4.204 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.153 0.847 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.124 0.876 44 H 0.103 0.897 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.089 0.911 48 H 0.049 0.951 49 H 0.096 0.904 50 H 0.087 0.913 51 H 0.073 0.927 52 H 0.094 0.906 53 H 0.093 0.907 54 H 0.069 0.931 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.025 1.152 13.267 19.340 hybrid contribution -1.768 -0.887 -0.546 2.052 sum 12.257 0.265 12.720 17.667 Atomic orbital electron populations 1.21728 0.94326 1.02845 1.01559 1.22563 0.95324 0.83741 0.99742 1.87854 1.22240 1.27202 1.94360 1.21969 0.81211 0.96784 0.94863 0.93148 1.22010 1.04085 1.00708 0.90186 1.21269 0.78885 0.83312 0.87995 1.90606 1.44328 1.29494 1.83181 1.48526 1.56653 1.17507 1.10045 1.21199 0.94465 0.83426 1.03064 1.21867 0.98741 0.99007 0.98760 1.21486 0.91729 0.90796 0.93075 0.92513 1.22604 0.98910 0.96412 0.97360 1.21893 0.97431 0.96352 0.99837 1.20446 0.90050 0.89781 0.95162 0.93384 1.22685 0.97467 0.99249 0.79615 1.45135 1.03190 1.31909 1.52177 1.19088 0.83771 1.09928 1.21385 0.91049 1.25253 1.00825 0.98424 1.00771 1.69960 1.34010 1.20169 1.34018 0.85443 0.82107 0.77076 0.76492 1.19969 1.22409 1.22262 1.21565 0.97066 1.00316 0.93766 1.21891 0.92803 1.02416 1.03152 1.21892 1.01341 0.97346 0.99834 0.89155 0.91245 0.95519 0.95570 0.90837 0.88429 0.84656 0.88482 0.88619 0.87964 0.95695 0.92091 0.87646 0.89715 0.91919 0.95187 0.91108 0.95062 0.90396 0.91346 0.92697 0.90643 0.90693 0.93125 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.62 10.28 71.98 0.74 -3.88 16 2 C 0.06 2.03 6.01 71.98 0.43 2.46 16 3 O -0.40 -14.36 8.87 -135.19 -1.20 -15.56 16 4 C 0.11 3.21 1.42 30.60 0.04 3.25 16 5 H 0.05 1.59 7.45 -2.39 -0.02 1.58 16 6 C -0.13 -3.82 3.72 29.85 0.11 -3.71 16 7 C 0.50 20.68 7.57 87.66 0.66 21.34 16 8 O -0.59 -30.76 15.08 10.76 0.16 -30.60 16 9 N -0.60 -23.84 2.88 -822.64 -2.37 -26.21 16 10 C 0.10 2.90 4.95 86.05 0.43 3.33 16 11 C -0.14 -4.37 5.00 29.39 0.15 -4.23 16 12 C 0.14 4.93 4.08 44.61 0.18 5.11 16 13 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 14 C -0.11 -3.24 6.01 31.60 0.19 -3.05 16 15 C -0.12 -3.87 5.78 30.32 0.18 -3.69 16 16 C 0.15 6.98 1.94 43.74 0.09 7.07 16 17 H 0.05 2.67 6.14 -2.39 -0.01 2.65 16 18 C 0.13 6.40 5.68 85.47 0.49 6.88 16 19 N -0.60 -29.41 2.69 -650.40 -1.75 -31.16 16 20 C -0.21 -12.05 10.40 84.03 0.87 -11.18 16 21 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 22 C -0.06 -3.51 5.48 84.86 0.46 -3.05 16 23 N -0.93 -56.70 8.15 21.65 0.18 -56.53 16 24 Si 0.96 49.24 29.55 68.60 2.03 51.27 16 25 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 27 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 28 C -0.11 -2.20 2.71 -10.79 -0.03 -2.23 16 29 C -0.15 -2.15 8.91 71.98 0.64 -1.51 16 30 C -0.15 -2.73 7.75 71.98 0.56 -2.18 16 31 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.03 0.97 7.99 -2.39 -0.02 0.95 16 35 H 0.07 1.88 5.55 -2.39 -0.01 1.87 16 36 H 0.10 2.83 8.11 -2.39 -0.02 2.82 16 37 H 0.14 2.80 5.53 -2.38 -0.01 2.79 16 38 H 0.10 2.03 6.20 -2.38 -0.01 2.01 16 39 H 0.10 2.44 3.93 -2.39 -0.01 2.43 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.11 2.10 7.39 -2.39 -0.02 2.08 16 44 H 0.08 2.36 6.16 -2.39 -0.01 2.34 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.07 4.28 5.33 -2.39 -0.01 4.27 16 48 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16 49 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.07 0.89 6.39 -2.38 -0.02 0.87 16 51 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.05 1.06 6.57 -2.38 -0.02 1.04 16 55 H 0.05 0.96 7.90 -2.39 -0.02 0.94 16 Total: -1.00 -78.04 398.83 4.10 -73.94 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.86 Total: 24.10 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 6.19 Total: 10.75 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -3.94 Total: -113.90 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.04 Total: -46.16 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.03 Total: 51.27 kcal Total: -78.04 4.10 -73.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270484297.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.610 kcal (2) G-P(sol) polarization free energy of solvation -78.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds