Wall clock time and date at job start Tue Mar 31 2020 22:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99736 * 2 1 4 4 C 1.53003 * 109.46355 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.46728 * 175.65312 * 4 3 2 6 6 C 1.50700 * 112.84580 * 302.15057 * 5 4 3 7 7 O 1.21285 * 119.99298 * 114.19602 * 6 5 4 8 8 N 1.34770 * 120.00610 * 294.19069 * 6 5 4 9 9 C 1.46497 * 120.00613 * 174.99127 * 8 6 5 10 10 H 1.08998 * 109.46905 * 35.00004 * 9 8 6 11 11 C 1.52993 * 109.47172 * 154.99833 * 9 8 6 12 12 C 1.53007 * 109.46869 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47061 * 299.99968 * 12 11 9 14 14 H 1.08998 * 109.47235 * 300.00187 * 13 12 11 15 15 C 1.52999 * 109.46850 * 180.02562 * 13 12 11 16 16 N 1.46503 * 109.47034 * 175.00321 * 15 13 12 17 17 C 1.36932 * 119.99903 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00590 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99592 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00270 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99875 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47276 * 89.99938 * 21 19 17 23 23 H 1.48500 * 109.47094 * 209.99862 * 21 19 17 24 24 H 1.48499 * 109.46934 * 329.99921 * 21 19 17 25 25 C 1.53001 * 109.46863 * 60.00085 * 13 12 11 26 26 C 1.52994 * 109.47341 * 300.00007 * 25 13 12 27 27 C 1.53783 * 113.61326 * 170.95733 * 5 4 3 28 28 C 1.53949 * 87.01678 * 220.04728 * 27 5 4 29 29 C 1.53776 * 87.11439 * 25.36322 * 28 27 5 30 30 H 1.08999 * 109.47740 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47381 * 300.00207 * 1 2 3 32 32 H 1.08999 * 109.46989 * 59.99758 * 1 2 3 33 33 H 1.08991 * 109.47277 * 60.00159 * 3 2 1 34 34 H 1.08998 * 109.46691 * 299.99722 * 3 2 1 35 35 H 1.09002 * 109.47372 * 295.65138 * 4 3 2 36 36 H 1.08995 * 109.47690 * 55.65359 * 4 3 2 37 37 H 0.97009 * 119.99458 * 354.99436 * 8 6 5 38 38 H 1.08998 * 109.47894 * 300.00012 * 11 9 8 39 39 H 1.09002 * 109.47460 * 60.00900 * 11 9 8 40 40 H 1.08998 * 109.47249 * 60.00147 * 12 11 9 41 41 H 1.09001 * 109.46839 * 180.02562 * 12 11 9 42 42 H 1.08999 * 109.47519 * 295.00025 * 15 13 12 43 43 H 1.08995 * 109.47388 * 55.00490 * 15 13 12 44 44 H 0.97003 * 119.99522 * 359.97438 * 16 15 13 45 45 H 0.97003 * 120.00232 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.46826 * 59.99989 * 25 13 12 47 47 H 1.08999 * 109.46885 * 179.97438 * 25 13 12 48 48 H 1.08998 * 109.47034 * 300.00067 * 26 25 13 49 49 H 1.09003 * 109.47191 * 180.02562 * 26 25 13 50 50 H 1.09000 * 113.60976 * 334.56607 * 27 5 4 51 51 H 1.08997 * 113.61515 * 105.47081 * 27 5 4 52 52 H 1.09003 * 113.53593 * 270.81122 * 28 27 5 53 53 H 1.09002 * 113.74648 * 139.94415 * 28 27 5 54 54 H 1.09000 * 113.61524 * 220.08707 * 29 28 27 55 55 H 1.09005 * 113.69153 * 89.19735 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1574 2.5782 -0.1100 6 6 3.7126 3.3224 -1.3426 7 8 3.0392 4.3254 -1.2352 8 7 4.0630 2.8736 -2.5641 9 6 3.5409 3.5319 -3.7641 10 1 3.4482 4.6023 -3.5801 11 6 4.4995 3.2965 -4.9330 12 6 3.9544 3.9847 -6.1861 13 6 2.5802 3.4057 -6.5290 14 1 2.6725 2.3354 -6.7132 15 6 2.0354 4.0934 -7.7824 16 7 0.7764 3.4584 -8.1797 17 6 0.1007 3.9084 -9.2825 18 1 0.4957 4.7316 -9.8591 19 6 -1.0925 3.3069 -9.6585 20 7 -1.5741 2.3039 -8.9555 21 14 -2.0139 3.9203 -11.1633 22 1 -1.5501 3.1794 -12.3638 23 1 -3.4703 3.6980 -10.9766 24 1 -1.7539 5.3709 -11.3457 25 6 1.6216 3.6412 -5.3600 26 6 2.1667 2.9531 -4.1069 27 6 5.6806 2.5913 0.1013 28 6 5.4780 3.8929 0.8981 29 6 4.0477 3.4049 1.1820 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8629 0.7122 0.9255 36 1 3.8516 0.5780 -0.8493 37 1 4.6611 2.1145 -2.6486 38 1 5.4784 3.7093 -4.6890 39 1 4.5921 2.2261 -5.1171 40 1 3.8621 5.0550 -6.0019 41 1 4.6371 3.8166 -7.0190 42 1 1.8594 5.1481 -7.5709 43 1 2.7600 4.0012 -8.5915 44 1 0.4219 2.7187 -7.6619 45 1 -2.4078 1.8834 -9.2185 46 1 1.5293 4.7116 -5.1757 47 1 0.6425 3.2292 -5.6044 48 1 2.2590 1.8828 -4.2911 49 1 1.4835 3.1205 -3.2742 50 1 6.0445 1.7610 0.7066 51 1 6.2481 2.7258 -0.8195 52 1 5.5187 4.7912 0.2820 53 1 6.1006 3.9629 1.7901 54 1 3.2987 4.1953 1.1324 55 1 3.9629 2.7975 2.0832 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272778559.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:29 Heat of formation + Delta-G solvation = -103.854928 kcal Electronic energy + Delta-G solvation = -30672.799551 eV Core-core repulsion = 26708.478378 eV Total energy + Delta-G solvation = -3964.321173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95585 -40.07884 -38.85611 -38.27164 -36.69849 -35.15822 -33.21757 -32.71942 -31.76518 -30.60652 -28.01827 -27.03752 -26.52971 -25.86174 -24.64586 -23.90357 -23.25510 -22.29869 -21.76070 -21.04904 -19.88516 -19.14984 -17.74875 -17.45267 -17.36944 -17.04701 -16.68994 -16.41767 -15.98726 -15.96132 -15.62393 -15.57834 -15.30917 -15.07525 -14.68700 -14.62211 -14.50534 -14.09331 -13.78069 -13.61844 -13.39454 -13.35847 -13.15718 -13.09560 -12.87292 -12.78988 -12.68575 -12.33222 -12.17790 -12.13475 -12.09828 -12.05493 -11.91812 -11.81021 -11.48379 -11.29667 -11.25738 -11.18995 -11.16949 -10.91663 -10.74378 -10.64233 -10.03939 -8.99525 -7.96199 -5.24543 1.45169 1.47343 1.55773 1.57971 2.12283 2.54947 2.67599 3.37024 3.41006 3.57156 3.65348 3.71792 3.74647 3.89996 3.93882 3.98658 4.06213 4.07093 4.14490 4.24751 4.39884 4.42240 4.43492 4.43860 4.48929 4.51008 4.54295 4.55397 4.57761 4.78271 4.80358 4.82689 4.87106 4.89348 4.92560 5.02642 5.05696 5.06456 5.08819 5.10287 5.13272 5.18400 5.21993 5.24893 5.29237 5.45052 5.47306 5.50260 5.53072 5.59975 6.10114 6.26522 6.56501 7.25441 7.32415 8.10050 8.33149 9.27582 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.002408 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.680380 B =11627.301490 C =13050.235651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.059 3.941 4 C -0.088 4.088 5 C -0.107 4.107 6 C 0.534 3.466 7 O -0.581 6.581 8 N -0.710 5.710 9 C 0.152 3.848 10 H 0.067 0.933 11 C -0.111 4.111 12 C -0.101 4.101 13 C -0.083 4.083 14 H 0.066 0.934 15 C 0.154 3.846 16 N -0.745 5.745 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.270 1.270 25 C -0.100 4.100 26 C -0.114 4.114 27 C -0.107 4.107 28 C -0.143 4.143 29 C -0.123 4.123 30 H 0.102 0.898 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.023 0.977 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.414 0.586 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.014 0.986 43 H 0.023 0.977 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.050 0.950 47 H 0.040 0.960 48 H 0.069 0.931 49 H 0.039 0.961 50 H 0.120 0.880 51 H 0.080 0.920 52 H 0.060 0.940 53 H 0.091 0.909 54 H 0.053 0.947 55 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.168 -3.389 23.669 30.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.018 4.018 4 C -0.126 4.126 5 C -0.110 4.110 6 C 0.322 3.678 7 O -0.461 6.461 8 N -0.361 5.361 9 C 0.047 3.953 10 H 0.085 0.915 11 C -0.149 4.149 12 C -0.140 4.140 13 C -0.102 4.102 14 H 0.085 0.915 15 C 0.027 3.973 16 N -0.388 5.388 17 C -0.377 4.377 18 H 0.092 0.908 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.803 3.197 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.195 1.195 25 C -0.138 4.138 26 C -0.153 4.153 27 C -0.144 4.144 28 C -0.180 4.180 29 C -0.161 4.161 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.251 0.749 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.032 0.968 43 H 0.041 0.959 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.087 0.913 49 H 0.058 0.942 50 H 0.139 0.861 51 H 0.098 0.902 52 H 0.079 0.921 53 H 0.109 0.891 54 H 0.072 0.928 55 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 18.782 -2.719 23.587 30.274 hybrid contribution -1.658 0.148 -0.976 1.929 sum 17.124 -2.571 22.611 28.480 Atomic orbital electron populations 1.22895 0.80002 1.03907 1.00274 1.87797 1.20914 1.28261 1.95496 1.22564 0.95393 0.84275 0.99569 1.21411 0.91548 0.94198 1.05398 1.21991 1.00101 0.95529 0.93424 1.20465 0.78511 0.83730 0.85144 1.90693 1.40747 1.27317 1.87308 1.45931 1.49964 1.35460 1.04720 1.20869 0.92902 0.96955 0.84576 0.91459 1.21713 0.98288 1.02468 0.92406 1.21432 0.94584 1.00012 0.97961 1.21240 0.95600 1.00035 0.93304 0.91512 1.20881 0.86905 0.94826 0.94649 1.42615 1.24053 1.40249 1.31860 1.19659 1.02344 1.12378 1.03365 0.90785 1.25586 0.99467 0.99283 1.02643 1.69820 1.22457 1.27210 1.42659 0.85126 0.77283 0.78096 0.79187 1.21158 1.22184 1.19532 1.21355 0.98286 0.99899 0.94303 1.21779 0.96634 1.00423 0.96468 1.23036 0.90590 0.99121 1.01660 1.22845 0.96644 0.97326 1.01192 1.22958 0.98124 0.99128 0.95899 0.87935 0.93021 0.94872 0.92907 0.95850 0.87721 0.89783 0.74861 0.89065 0.89895 0.91771 0.89871 0.96848 0.95902 0.79419 0.94021 0.93084 0.94159 0.91276 0.94187 0.86147 0.90176 0.92110 0.89052 0.92765 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.41 -8.83 10.70 -148.98 -1.59 -10.42 16 3 C 0.06 1.17 5.67 71.98 0.41 1.58 16 4 C -0.09 -1.21 5.00 30.60 0.15 -1.05 16 5 C -0.11 -1.57 0.80 -52.40 -0.04 -1.61 16 6 C 0.53 11.78 5.21 87.66 0.46 12.23 16 7 O -0.58 -18.43 15.58 -3.05 -0.05 -18.47 16 8 N -0.71 -12.97 5.08 -442.56 -2.25 -15.22 16 9 C 0.15 3.43 2.49 44.99 0.11 3.55 16 10 H 0.07 1.86 7.51 -2.39 -0.02 1.84 16 11 C -0.11 -1.97 5.39 30.59 0.16 -1.80 16 12 C -0.10 -2.33 5.20 30.60 0.16 -2.17 16 13 C -0.08 -2.65 2.22 -10.79 -0.02 -2.67 16 14 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 15 C 0.15 6.31 5.65 86.38 0.49 6.80 16 16 N -0.74 -39.26 5.33 -343.46 -1.83 -41.09 16 17 C -0.25 -14.19 9.99 84.04 0.84 -13.35 16 18 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 20 N -0.97 -60.95 13.06 21.65 0.28 -60.66 16 21 Si 0.97 47.28 29.55 68.60 2.03 49.30 16 22 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 C -0.10 -3.39 5.08 30.59 0.16 -3.24 16 26 C -0.11 -3.22 5.50 30.59 0.17 -3.05 16 27 C -0.11 -0.94 7.24 31.18 0.23 -0.71 16 28 C -0.14 -1.73 7.81 31.18 0.24 -1.49 16 29 C -0.12 -1.82 6.84 31.12 0.21 -1.60 16 30 H 0.10 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 1.01 8.01 -2.39 -0.02 1.00 16 34 H 0.02 0.59 7.19 -2.39 -0.02 0.57 16 35 H 0.10 1.03 8.13 -2.39 -0.02 1.01 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.41 4.92 8.61 -92.70 -0.80 4.12 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.37 20.89 6.85 -92.71 -0.64 20.26 16 45 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 46 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 47 H 0.04 1.64 7.18 -2.39 -0.02 1.62 16 48 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.12 0.49 8.10 -2.39 -0.02 0.47 16 51 H 0.08 0.62 8.09 -2.39 -0.02 0.61 16 52 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 54 H 0.05 1.13 7.34 -2.39 -0.02 1.11 16 55 H 0.11 1.12 8.09 -2.38 -0.02 1.10 16 Total: -1.00 -75.07 428.73 1.44 -73.63 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.58 Total: 33.93 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 5.44 Total: -11.00 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -3.79 Total: -116.97 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -1.64 Total: -28.90 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -75.07 1.44 -73.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272778559.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.225 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds