Wall clock time and date at job start Tue Mar 31 2020 21:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47213 * 2 1 4 4 C 1.42904 * 113.99939 * 184.87846 * 3 2 1 5 5 H 1.09005 * 109.46937 * 31.91164 * 4 3 2 6 6 C 1.50694 * 109.47454 * 151.91781 * 4 3 2 7 7 O 1.21279 * 120.00102 * 10.13796 * 6 4 3 8 8 N 1.34777 * 120.00091 * 190.13266 * 6 4 3 9 9 C 1.46506 * 119.99940 * 184.48396 * 8 6 4 10 10 H 1.08996 * 110.32285 * 37.01829 * 9 8 6 11 11 C 1.50123 * 110.24850 * 159.02449 * 9 8 6 12 12 C 1.54841 * 110.81708 * 216.66199 * 11 9 8 13 13 C 1.54410 * 110.06444 * 321.06898 * 12 11 9 14 14 N 1.43435 * 116.39363 * 318.65434 * 13 12 11 15 15 C 1.36932 * 120.53635 * 271.73010 * 14 13 12 16 16 H 1.08002 * 120.00459 * 334.09284 * 15 14 13 17 17 C 1.38810 * 119.99786 * 153.81378 * 15 14 13 18 18 N 1.31617 * 120.00402 * 344.38910 * 17 15 14 19 19 Si 1.86802 * 119.99985 * 164.39118 * 17 15 14 20 20 H 1.48501 * 109.46902 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47467 * 119.99837 * 19 17 15 22 22 H 1.48497 * 109.47000 * 240.00079 * 19 17 15 23 23 C 1.50164 * 118.92587 * 91.45276 * 14 13 12 24 24 C 1.46241 * 107.53373 * 289.84252 * 23 14 13 25 25 C 1.53005 * 109.46742 * 271.91838 * 4 3 2 26 26 C 1.54262 * 110.03379 * 292.91080 * 25 4 3 27 27 C 1.54891 * 104.19487 * 217.10403 * 26 25 4 28 28 C 1.54892 * 102.74751 * 37.94555 * 27 26 25 29 29 C 1.53877 * 110.03057 * 175.74157 * 25 4 3 30 30 H 1.08993 * 109.47072 * 300.00867 * 1 2 3 31 31 H 1.09000 * 109.46869 * 60.00160 * 1 2 3 32 32 H 1.08997 * 109.47649 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46841 * 239.99320 * 2 1 3 34 34 H 1.09001 * 109.46401 * 120.00068 * 2 1 3 35 35 H 0.97002 * 119.99756 * 4.49480 * 8 6 4 36 36 H 1.09011 * 109.20570 * 337.00343 * 11 9 8 37 37 H 1.08996 * 109.21137 * 96.31262 * 11 9 8 38 38 H 1.08997 * 109.36362 * 81.33172 * 12 11 9 39 39 H 1.09007 * 109.35689 * 201.06540 * 12 11 9 40 40 H 1.08998 * 107.88574 * 196.93302 * 13 12 11 41 41 H 1.08997 * 108.09924 * 80.54284 * 13 12 11 42 42 H 0.96998 * 120.00437 * 179.97438 * 18 17 15 43 43 H 1.09007 * 109.84658 * 49.35135 * 23 14 13 44 44 H 1.08997 * 109.84917 * 170.33337 * 23 14 13 45 45 H 1.08999 * 108.52433 * 179.64479 * 24 23 14 46 46 H 1.08994 * 108.52393 * 297.16918 * 24 23 14 47 47 H 1.09004 * 110.01574 * 54.35793 * 25 4 3 48 48 H 1.09001 * 110.48354 * 335.78443 * 26 25 4 49 49 H 1.09001 * 110.48834 * 98.42655 * 26 25 4 50 50 H 1.08989 * 110.76049 * 279.62784 * 27 26 25 51 51 H 1.09004 * 110.91402 * 156.32496 * 27 26 25 52 52 H 1.08998 * 110.48290 * 203.37845 * 28 27 26 53 53 H 1.08992 * 110.60200 * 80.78822 * 28 27 26 54 54 H 1.09003 * 110.03398 * 238.56855 * 29 25 4 55 55 H 1.09000 * 110.03442 * 359.95262 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4265 1.4616 -0.1110 5 1 3.8116 0.6368 -0.7107 6 6 3.7749 2.7697 -0.7731 7 8 2.9162 3.6078 -0.9494 8 7 5.0409 3.0084 -1.1692 9 6 5.4010 4.3161 -1.7228 10 1 4.8636 5.1086 -1.2021 11 6 6.8822 4.5356 -1.6157 12 6 7.1972 6.0177 -1.2965 13 6 6.2384 6.9430 -2.0767 14 7 5.9635 6.5761 -3.4359 15 6 6.7688 7.0167 -4.4519 16 1 7.3309 7.9318 -4.3375 17 6 6.8674 6.2840 -5.6268 18 7 6.4487 5.0367 -5.6617 19 14 7.5942 7.0684 -7.1585 20 1 7.9871 8.4687 -6.8586 21 1 8.7904 6.3003 -7.5879 22 1 6.5834 7.0595 -8.2463 23 6 4.7819 5.6959 -3.7258 24 6 5.0914 4.3608 -3.2156 25 6 4.0526 1.4134 1.2842 26 6 3.6559 2.6707 2.0852 27 6 4.9245 3.0152 2.9043 28 6 6.0697 2.6945 1.9119 29 6 5.5873 1.4285 1.1741 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5140 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 5.7135 2.3142 -1.0878 36 1 7.2817 3.9049 -0.8214 37 1 7.3542 4.2640 -2.5599 38 1 7.0777 6.1903 -0.2269 39 1 8.2246 6.2391 -1.5857 40 1 6.6658 7.9457 -2.0753 41 1 5.2921 6.9823 -1.5374 42 1 6.5172 4.5248 -6.4828 43 1 3.8968 6.0877 -3.2244 44 1 4.6093 5.6504 -4.8010 45 1 4.2402 3.7090 -3.4123 46 1 5.9528 3.9733 -3.7596 47 1 3.7248 0.5163 1.8095 48 1 3.4035 3.4888 1.4106 49 1 2.8203 2.4517 2.7500 50 1 4.9944 2.3857 3.7913 51 1 4.9357 4.0700 3.1791 52 1 6.9956 2.4927 2.4503 53 1 6.2093 3.5157 1.2091 54 1 6.0044 0.5391 1.6467 55 1 5.8861 1.4692 0.1266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273437105.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:54 Heat of formation + Delta-G solvation = -78.330887 kcal Electronic energy + Delta-G solvation = -32546.388909 eV Core-core repulsion = 28583.174541 eV Total energy + Delta-G solvation = -3963.214368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.73745 -39.86815 -38.58151 -38.09953 -36.15650 -34.23576 -33.00751 -32.57812 -32.13404 -30.58692 -29.55094 -28.00004 -26.66511 -25.19129 -24.93723 -23.71862 -22.13791 -21.76857 -21.32907 -21.16971 -20.30094 -18.59521 -18.20882 -17.85527 -17.18583 -16.88681 -16.75751 -16.46730 -15.77454 -15.67789 -15.59570 -15.47730 -15.22013 -15.13956 -14.54034 -14.24331 -14.12650 -13.65933 -13.58543 -13.51886 -13.27738 -13.20386 -13.06047 -13.04391 -12.67410 -12.54514 -12.39116 -12.08035 -11.97671 -11.90673 -11.86298 -11.84982 -11.78573 -11.73188 -11.65949 -11.63670 -11.35163 -11.19049 -11.01092 -10.83467 -10.53618 -10.29360 -9.88259 -8.63170 -7.80262 -5.26264 1.47025 1.50688 1.59217 1.66872 1.92499 2.54480 2.91509 3.33308 3.53976 3.58616 3.60495 3.75695 3.87020 4.02191 4.05563 4.13596 4.16147 4.26232 4.34159 4.39460 4.47790 4.53696 4.55227 4.63404 4.64321 4.68160 4.71975 4.80559 4.81945 4.86992 4.89544 4.94588 4.97565 5.03115 5.09996 5.11235 5.21099 5.23273 5.26499 5.27105 5.32990 5.33805 5.39068 5.42280 5.53137 5.56463 5.63660 5.70587 5.74149 6.08657 6.15494 6.44391 6.66984 7.17979 7.33857 7.89635 8.43751 9.23865 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015339 B = 0.003357 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.014951 B = 8337.648360 C = 9414.319169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.386 6.386 4 C 0.082 3.918 5 H 0.104 0.896 6 C 0.514 3.486 7 O -0.573 6.573 8 N -0.704 5.704 9 C 0.166 3.834 10 H 0.062 0.938 11 C -0.101 4.101 12 C -0.130 4.130 13 C 0.148 3.852 14 N -0.600 5.600 15 C -0.258 4.258 16 H 0.064 0.936 17 C -0.041 4.041 18 N -0.918 5.918 19 Si 0.960 3.040 20 H -0.273 1.273 21 H -0.291 1.291 22 H -0.296 1.296 23 C 0.177 3.823 24 C -0.116 4.116 25 C -0.099 4.099 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.127 4.127 29 C -0.121 4.121 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.408 0.592 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.032 0.968 41 H 0.028 0.972 42 H 0.247 0.753 43 H 0.001 0.999 44 H 0.057 0.943 45 H 0.013 0.987 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.036 0.964 49 H 0.066 0.934 50 H 0.084 0.916 51 H 0.056 0.944 52 H 0.083 0.917 53 H 0.053 0.947 54 H 0.098 0.902 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 -14.603 18.024 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.305 6.305 4 C 0.021 3.979 5 H 0.122 0.878 6 C 0.301 3.699 7 O -0.451 6.451 8 N -0.360 5.360 9 C 0.062 3.938 10 H 0.080 0.920 11 C -0.139 4.139 12 C -0.171 4.171 13 C 0.020 3.980 14 N -0.322 5.322 15 C -0.389 4.389 16 H 0.081 0.919 17 C -0.237 4.237 18 N -0.564 5.564 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.218 1.218 22 H -0.223 1.223 23 C 0.053 3.947 24 C -0.156 4.156 25 C -0.118 4.118 26 C -0.158 4.158 27 C -0.157 4.157 28 C -0.165 4.165 29 C -0.159 4.159 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.249 0.751 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.019 0.981 44 H 0.076 0.924 45 H 0.031 0.969 46 H 0.100 0.900 47 H 0.125 0.875 48 H 0.055 0.945 49 H 0.085 0.915 50 H 0.102 0.898 51 H 0.075 0.925 52 H 0.101 0.899 53 H 0.072 0.928 54 H 0.116 0.884 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.910 -13.928 17.773 22.767 hybrid contribution 0.448 0.156 -1.492 1.566 sum -2.462 -13.772 16.281 21.466 Atomic orbital electron populations 1.21763 0.93260 1.03418 1.02283 1.22841 0.96246 0.82409 1.01483 1.88042 1.19553 1.28433 1.94515 1.22198 0.83511 0.94708 0.97509 0.87829 1.20864 0.82228 0.89304 0.77501 1.90695 1.48925 1.48905 1.56623 1.46415 1.10426 1.15987 1.63166 1.20027 0.96261 0.84202 0.93340 0.91981 1.21527 0.93308 0.97624 1.01403 1.22621 1.00068 0.94881 0.99531 1.20465 0.96210 0.96153 0.85178 1.44285 1.27618 1.58815 1.01486 1.19447 1.21512 1.02918 0.94974 0.91868 1.25603 1.01061 0.95423 1.01626 1.70085 1.52281 1.07801 1.26272 0.85316 0.77221 0.78179 0.80299 1.19753 1.21848 1.22303 1.19859 0.86313 0.89598 0.98978 1.21114 1.00988 0.98279 0.95180 1.22231 0.96249 1.00270 0.93033 1.22368 0.98445 0.96650 0.98322 1.22471 0.93830 1.01112 0.98258 1.22395 0.98634 0.97421 0.98037 1.22369 0.92793 0.99792 1.00904 0.92284 0.93501 0.88467 0.92484 0.90914 0.75085 0.90286 0.93248 0.90506 0.92893 0.95008 0.95322 0.94392 0.98050 0.92440 0.96856 0.90019 0.87471 0.94476 0.91529 0.89752 0.92478 0.89875 0.92840 0.88358 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 10.28 71.98 0.74 -1.76 16 2 C 0.05 0.82 6.51 71.98 0.47 1.29 16 3 O -0.39 -10.50 9.38 -130.14 -1.22 -11.72 16 4 C 0.08 1.95 2.26 29.85 0.07 2.01 16 5 H 0.10 1.90 7.74 -2.38 -0.02 1.88 16 6 C 0.51 16.98 5.36 87.66 0.47 17.45 16 7 O -0.57 -25.26 15.80 15.81 0.25 -25.01 16 8 N -0.70 -21.20 4.18 -447.72 -1.87 -23.07 16 9 C 0.17 6.23 2.14 43.91 0.09 6.32 16 10 H 0.06 2.62 5.90 -2.39 -0.01 2.61 16 11 C -0.10 -3.48 5.30 30.30 0.16 -3.32 16 12 C -0.13 -4.56 6.40 31.70 0.20 -4.36 16 13 C 0.15 6.29 5.13 87.42 0.45 6.74 16 14 N -0.60 -30.39 2.60 -708.85 -1.85 -32.24 16 15 C -0.26 -14.11 9.62 84.03 0.81 -13.30 16 16 H 0.06 3.42 7.87 -2.91 -0.02 3.40 16 17 C -0.04 -2.26 4.99 84.86 0.42 -1.83 16 18 N -0.92 -51.72 9.27 21.65 0.20 -51.52 16 19 Si 0.96 44.78 29.58 68.60 2.03 46.81 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 23 C 0.18 9.08 5.24 83.58 0.44 9.52 16 24 C -0.12 -5.34 4.72 28.36 0.13 -5.21 16 25 C -0.10 -1.76 2.92 -10.07 -0.03 -1.79 16 26 C -0.12 -2.68 6.02 31.67 0.19 -2.49 16 27 C -0.12 -2.11 6.91 31.89 0.22 -1.89 16 28 C -0.13 -2.12 6.83 31.67 0.22 -1.91 16 29 C -0.12 -1.73 5.79 31.32 0.18 -1.55 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 0.91 7.97 -2.39 -0.02 0.89 16 34 H 0.07 0.93 7.74 -2.39 -0.02 0.91 16 35 H 0.41 9.57 5.57 -92.71 -0.52 9.05 16 36 H 0.08 2.12 7.54 -2.38 -0.02 2.11 16 37 H 0.05 2.06 6.83 -2.39 -0.02 2.04 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.03 1.33 8.00 -2.39 -0.02 1.31 16 41 H 0.03 1.20 6.89 -2.39 -0.02 1.18 16 42 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 43 H 0.00 0.07 8.13 -2.38 -0.02 0.05 16 44 H 0.06 3.30 6.12 -2.39 -0.01 3.28 16 45 H 0.01 0.62 7.90 -2.39 -0.02 0.60 16 46 H 0.08 4.15 5.19 -2.39 -0.01 4.14 16 47 H 0.11 1.42 7.73 -2.39 -0.02 1.40 16 48 H 0.04 1.14 6.07 -2.39 -0.01 1.13 16 49 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 53 H 0.05 1.12 7.65 -2.39 -0.02 1.10 16 54 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 55 H 0.06 0.94 4.50 -2.39 -0.01 0.93 16 Total: -1.00 -70.10 403.60 3.12 -66.98 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.35 Total: 25.86 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 5.23 Total: 3.93 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -3.52 Total: -106.84 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.97 Total: -36.73 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.10 3.12 -66.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273437105.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.351 kcal (2) G-P(sol) polarization free energy of solvation -70.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds