Wall clock time and date at job start Tue Mar 31 2020 22:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00279 * 2 1 4 4 C 1.53002 * 109.47280 * 179.97438 * 3 2 1 5 5 C 1.53010 * 109.47096 * 180.02562 * 4 3 2 6 6 N 1.46890 * 109.46785 * 182.10710 * 5 4 3 7 7 C 1.47453 * 111.05355 * 62.36573 * 6 5 4 8 8 C 1.50800 * 107.90655 * 158.93428 * 7 6 5 9 9 C 1.53533 * 111.73307 * 95.12144 * 8 7 6 10 10 C 1.53880 * 113.09175 * 297.11407 * 9 8 7 11 11 C 1.55096 * 108.02244 * 222.26142 * 10 9 8 12 12 C 1.54591 * 101.12275 * 215.40948 * 11 10 9 13 13 N 1.46809 * 105.10754 * 28.12880 * 12 11 10 14 14 C 1.46444 * 124.46067 * 162.95658 * 13 12 11 15 15 C 1.53001 * 109.47387 * 89.99806 * 14 13 12 16 16 C 1.50698 * 109.47091 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00339 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99730 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00335 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00207 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47021 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47123 * 119.99659 * 20 18 16 23 23 H 1.48499 * 109.47451 * 240.00142 * 20 18 16 24 24 C 1.34583 * 111.15425 * 342.95563 * 13 12 11 25 25 O 1.21215 * 124.64132 * 176.79418 * 24 13 12 26 26 C 1.50328 * 114.32280 * 344.51101 * 10 9 8 27 27 C 1.39761 * 111.04961 * 292.96201 * 6 5 4 28 28 H 1.08996 * 109.47295 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47246 * 300.00108 * 1 2 3 30 30 H 1.08999 * 109.47090 * 59.99785 * 1 2 3 31 31 H 1.09006 * 109.47502 * 59.99599 * 3 2 1 32 32 H 1.09000 * 109.47124 * 300.00091 * 3 2 1 33 33 H 1.08997 * 109.47199 * 60.00034 * 4 3 2 34 34 H 1.08996 * 109.47220 * 299.99401 * 4 3 2 35 35 H 1.09000 * 109.47115 * 62.10722 * 5 4 3 36 36 H 1.09008 * 109.46637 * 302.10494 * 5 4 3 37 37 H 1.08931 * 109.91452 * 278.78408 * 7 6 5 38 38 H 1.09059 * 109.72435 * 39.41083 * 7 6 5 39 39 H 1.09284 * 108.72085 * 215.32529 * 8 7 6 40 40 H 1.08913 * 109.32691 * 333.64321 * 8 7 6 41 41 H 1.09207 * 108.90012 * 58.38504 * 9 8 7 42 42 H 1.09292 * 108.73159 * 176.12447 * 9 8 7 43 43 H 1.08819 * 110.79783 * 333.25034 * 11 10 9 44 44 H 1.08804 * 110.79154 * 97.48303 * 11 10 9 45 45 H 1.08924 * 110.28546 * 147.01767 * 12 11 10 46 46 H 1.08929 * 110.28014 * 269.24942 * 12 11 10 47 47 H 1.09001 * 109.47354 * 210.00402 * 14 13 12 48 48 H 1.09002 * 109.46926 * 329.99700 * 14 13 12 49 49 H 1.09002 * 109.46783 * 300.00096 * 15 14 13 50 50 H 1.08999 * 109.46742 * 60.00301 * 15 14 13 51 51 H 0.96994 * 120.00383 * 179.97438 * 19 18 16 52 52 H 1.09123 * 109.78842 * 318.59973 * 26 10 9 53 53 H 1.09525 * 109.11636 * 200.04794 * 26 10 9 54 54 H 1.09535 * 108.28965 * 313.09008 * 27 6 5 55 55 H 1.08691 * 109.40396 * 70.74639 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6213 2.4666 -0.0490 7 6 6.0581 1.8072 -1.2935 8 6 7.5005 2.1765 -1.5322 9 6 8.4588 1.1107 -0.9818 10 6 8.3617 0.9423 0.5447 11 6 9.8016 0.8090 1.1053 12 6 9.5808 -0.1967 2.2584 13 7 8.4248 -1.0027 1.8471 14 6 8.0638 -2.2944 2.4351 15 6 7.1200 -2.0703 3.6183 16 6 6.7491 -3.3995 4.2238 17 1 7.1464 -4.3128 3.8063 18 6 5.9016 -3.4496 5.3102 19 7 5.4173 -2.3374 5.8184 20 14 5.4412 -5.0972 6.0604 21 1 6.1141 -6.1880 5.3104 22 1 5.8747 -5.1330 7.4803 23 1 3.9694 -5.2805 5.9874 24 6 7.7393 -0.3996 0.8583 25 8 6.7755 -0.8758 0.2981 26 6 7.6497 2.0644 1.2473 27 6 6.1209 1.9016 1.1276 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8574 0.6435 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 3.8660 3.1096 0.9096 36 1 3.8070 3.1366 -0.8693 37 1 5.9633 0.7267 -1.1938 38 1 5.4465 2.1532 -2.1275 39 1 7.6634 2.2770 -2.6082 40 1 7.7102 3.1350 -1.0595 41 1 8.2357 0.1541 -1.4590 42 1 9.4826 1.3917 -1.2411 43 1 10.4730 0.4004 0.3526 44 1 10.1599 1.7652 1.4810 45 1 10.4587 -0.8296 2.3809 46 1 9.3618 0.3331 3.1847 47 1 7.5664 -2.9090 1.6848 48 1 8.9651 -2.8011 2.7802 49 1 7.6176 -1.4558 4.3686 50 1 6.2187 -1.5637 3.2731 51 1 4.8209 -2.3727 6.5824 52 1 7.9530 3.0206 0.8180 53 1 7.9288 2.0588 2.3064 54 1 5.6483 2.4046 1.9781 55 1 5.8525 0.8490 1.1650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273473707.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:46 Heat of formation + Delta-G solvation = -106.548097 kcal Electronic energy + Delta-G solvation = -31993.342342 eV Core-core repulsion = 28028.904384 eV Total energy + Delta-G solvation = -3964.437958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.29164 -39.90717 -38.81520 -37.52068 -36.62661 -35.26126 -33.70379 -33.03199 -31.89300 -29.94901 -28.42865 -27.31331 -27.05282 -26.27432 -25.13678 -23.73987 -23.26592 -23.02926 -21.45772 -20.64490 -19.41637 -18.72051 -17.77556 -17.37154 -17.24283 -17.18556 -16.68607 -16.60744 -16.37417 -16.12131 -16.02368 -15.32946 -15.18513 -14.99068 -14.67846 -14.51532 -14.41565 -14.27019 -13.87357 -13.65440 -13.55500 -13.23491 -13.16685 -13.00475 -12.95417 -12.88944 -12.81334 -12.61073 -12.49387 -12.11276 -12.07673 -11.99478 -11.90568 -11.84488 -11.58219 -11.54973 -11.42924 -11.39024 -11.11275 -10.70906 -10.65625 -10.43064 -9.53055 -9.11960 -8.27995 -6.41159 1.34170 1.36275 1.49274 1.72050 2.18361 2.38720 2.74883 3.03704 3.05364 3.29653 3.50560 3.73569 3.82815 4.01369 4.03985 4.06364 4.14660 4.24769 4.29479 4.30100 4.34631 4.37112 4.40237 4.41336 4.48356 4.50127 4.58968 4.61766 4.68671 4.69844 4.72395 4.75036 4.81334 4.87215 4.89946 4.91592 5.04739 5.07767 5.10592 5.15985 5.20233 5.23998 5.28001 5.30179 5.35897 5.42583 5.56399 5.61248 5.80939 6.11784 6.14631 6.24300 6.37092 6.42588 6.74157 7.28319 7.33122 8.84397 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007258 B = 0.004523 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3856.663717 B = 6189.299203 C = 9278.321663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.433 6.433 3 C 0.068 3.932 4 C -0.147 4.147 5 C 0.069 3.931 6 N -0.533 5.533 7 C 0.053 3.947 8 C -0.109 4.109 9 C -0.096 4.096 10 C -0.082 4.082 11 C -0.110 4.110 12 C 0.090 3.910 13 N -0.625 5.625 14 C 0.143 3.857 15 C 0.029 3.971 16 C -0.546 4.546 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.970 3.030 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.282 1.282 24 C 0.507 3.493 25 O -0.576 6.576 26 C -0.086 4.086 27 C 0.060 3.940 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.024 0.976 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.022 0.978 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.126 0.874 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.045 0.955 48 H 0.088 0.912 49 H 0.000 1.000 50 H -0.033 1.033 51 H 0.264 0.736 52 H 0.117 0.883 53 H 0.068 0.932 54 H 0.057 0.943 55 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 15.797 -14.692 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.353 6.353 3 C -0.009 4.009 4 C -0.186 4.186 5 C -0.058 4.058 6 N -0.255 5.255 7 C -0.073 4.073 8 C -0.146 4.146 9 C -0.134 4.134 10 C -0.086 4.086 11 C -0.147 4.147 12 C -0.032 4.032 13 N -0.357 5.357 14 C 0.021 3.979 15 C -0.009 4.009 16 C -0.584 4.584 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.793 3.207 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.208 1.208 24 C 0.296 3.704 25 O -0.456 6.456 26 C -0.124 4.124 27 C -0.070 4.070 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.041 0.959 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.144 0.856 45 H 0.114 0.886 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.018 0.982 50 H -0.015 1.015 51 H 0.073 0.927 52 H 0.135 0.865 53 H 0.087 0.913 54 H 0.076 0.924 55 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 4.471 15.791 -14.811 22.106 hybrid contribution -1.536 -2.130 1.140 2.863 sum 2.935 13.660 -13.671 19.548 Atomic orbital electron populations 1.22924 0.79315 1.03575 1.01191 1.87917 1.21933 1.29801 1.95645 1.22549 0.92725 0.84148 1.01457 1.22123 0.95058 1.00593 1.00865 1.22179 0.86333 0.93246 1.04085 1.59237 1.09013 1.55012 1.02261 1.21945 0.97863 0.96554 0.90982 1.21324 0.92234 0.99354 1.01702 1.21923 1.01788 0.99191 0.90496 1.21234 0.97266 0.91390 0.98666 1.23118 0.93837 1.00898 0.96860 1.22392 0.87993 0.93984 0.98852 1.48737 1.29541 1.21085 1.36318 1.21276 0.98827 0.83201 0.94566 1.19155 0.92930 0.96051 0.92732 1.21566 1.29067 0.93477 1.14297 0.91740 1.26018 0.95524 1.00801 0.97315 1.70122 1.33228 1.29152 1.24644 0.85335 0.77892 0.78979 0.78471 1.18275 1.19509 1.20781 1.21667 0.82102 0.88008 0.78632 1.90611 1.28740 1.70631 1.55631 1.21267 0.92406 0.98365 1.00346 1.20945 0.96729 0.96829 0.92542 0.89399 0.93273 0.91964 0.92566 0.90517 0.92814 0.95725 0.90212 0.87782 0.95945 0.89784 0.89863 0.89012 0.94517 0.87956 0.88030 0.85597 0.88610 0.91631 0.93599 0.89421 0.98201 1.01462 0.92689 0.86505 0.91313 0.92410 0.98108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.43 -14.37 10.70 -148.98 -1.59 -15.96 16 3 C 0.07 1.83 5.94 71.98 0.43 2.25 16 4 C -0.15 -4.67 5.05 30.60 0.15 -4.51 16 5 C 0.07 1.68 5.19 86.31 0.45 2.13 16 6 N -0.53 -13.88 4.14 -913.96 -3.79 -17.67 16 7 C 0.05 1.35 4.42 85.48 0.38 1.73 16 8 C -0.11 -2.08 5.31 30.06 0.16 -1.92 16 9 C -0.10 -2.06 4.89 31.07 0.15 -1.91 16 10 C -0.08 -2.10 0.55 -52.61 -0.03 -2.13 16 11 C -0.11 -1.97 5.83 31.85 0.19 -1.79 16 12 C 0.09 2.33 7.11 86.86 0.62 2.95 16 13 N -0.62 -23.87 2.94 -817.91 -2.40 -26.28 16 14 C 0.14 6.58 5.89 86.39 0.51 7.08 16 15 C 0.03 1.68 5.30 29.85 0.16 1.84 16 16 C -0.55 -32.77 9.11 25.60 0.23 -32.53 16 17 H 0.06 3.68 7.74 -2.91 -0.02 3.66 16 18 C 0.00 0.09 5.46 84.65 0.46 0.55 16 19 N -0.93 -59.32 13.29 21.45 0.28 -59.04 16 20 Si 0.97 46.08 29.54 68.60 2.03 48.11 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 C 0.51 19.65 5.39 87.85 0.47 20.12 16 25 O -0.58 -27.94 14.08 -2.83 -0.04 -27.98 16 26 C -0.09 -2.13 4.37 30.14 0.13 -2.00 16 27 C 0.06 1.89 4.35 88.00 0.38 2.27 16 28 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.87 6.87 -2.39 -0.02 1.86 16 34 H 0.02 1.02 6.92 -2.39 -0.02 1.00 16 35 H 0.08 1.82 7.84 -2.39 -0.02 1.81 16 36 H 0.10 1.90 8.03 -2.38 -0.02 1.88 16 37 H 0.02 0.78 5.55 -2.42 -0.01 0.76 16 38 H 0.08 1.80 7.87 -2.36 -0.02 1.78 16 39 H 0.08 1.25 8.17 -2.24 -0.02 1.23 16 40 H 0.09 1.52 6.43 -2.43 -0.02 1.50 16 41 H 0.04 1.01 7.38 -2.28 -0.02 0.99 16 42 H 0.10 1.46 7.37 -2.23 -0.02 1.44 16 43 H 0.10 1.45 7.56 -2.48 -0.02 1.44 16 44 H 0.13 1.43 7.88 -2.49 -0.02 1.41 16 45 H 0.10 2.08 8.14 -2.43 -0.02 2.06 16 46 H 0.07 1.76 8.14 -2.42 -0.02 1.74 16 47 H 0.05 2.28 7.89 -2.39 -0.02 2.26 16 48 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 49 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 50 H -0.03 -2.21 8.14 -2.39 -0.02 -2.23 16 51 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 52 H 0.12 2.16 6.64 -2.32 -0.02 2.14 16 53 H 0.07 1.72 7.77 -2.11 -0.02 1.70 16 54 H 0.06 1.85 7.76 -2.10 -0.02 1.83 16 55 H 0.00 0.04 4.11 -2.55 -0.01 0.03 16 Total: -1.00 -83.72 410.67 1.43 -82.30 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.85 Total: 20.54 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 6.09 Total: -4.02 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -5.90 Total: -102.98 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -1.63 Total: -43.94 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -83.72 1.43 -82.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273473707.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.252 kcal (2) G-P(sol) polarization free energy of solvation -83.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds