Wall clock time and date at job start Tue Mar 31 2020 22:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.52994 * 109.47271 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47506 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47090 * 180.02562 * 5 4 3 7 7 C 1.46856 * 110.99956 * 169.99844 * 6 5 4 8 8 C 1.53056 * 109.50620 * 174.07988 * 7 6 5 9 9 C 1.52993 * 109.28151 * 59.02796 * 8 7 6 10 10 C 1.53017 * 109.56814 * 182.46535 * 9 8 7 11 11 C 1.53080 * 108.55774 * 172.67697 * 10 9 8 12 12 C 1.50170 * 109.83494 * 48.79012 * 11 10 9 13 13 O 1.21273 * 118.22588 * 162.33783 * 12 11 10 14 14 N 1.33358 * 123.54822 * 342.37057 * 12 11 10 15 15 C 1.46495 * 117.95832 * 182.32521 * 14 12 11 16 16 C 1.53005 * 109.47069 * 89.99600 * 15 14 12 17 17 C 1.50700 * 109.46804 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00255 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99986 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99315 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00133 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46921 * 59.99977 * 21 19 17 23 23 H 1.48499 * 109.46985 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47043 * 299.99895 * 21 19 17 25 25 C 1.45773 * 124.07925 * 2.29610 * 14 12 11 26 26 C 1.52992 * 109.39358 * 302.54877 * 9 8 7 27 27 C 1.46846 * 111.00169 * 45.75335 * 6 5 4 28 28 H 1.09006 * 109.46869 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47612 * 299.99710 * 1 2 3 30 30 H 1.09000 * 109.47302 * 60.00085 * 1 2 3 31 31 H 1.09000 * 109.47641 * 59.99574 * 3 2 1 32 32 H 1.09005 * 109.47353 * 299.99940 * 3 2 1 33 33 H 1.09009 * 109.47094 * 59.99873 * 4 3 2 34 34 H 1.08998 * 109.47185 * 299.99929 * 4 3 2 35 35 H 1.08996 * 109.47006 * 60.00239 * 5 4 3 36 36 H 1.09004 * 109.46640 * 299.99886 * 5 4 3 37 37 H 1.09002 * 109.46247 * 54.07429 * 7 6 5 38 38 H 1.08998 * 109.46726 * 294.09472 * 7 6 5 39 39 H 1.09003 * 109.50615 * 299.09467 * 8 7 6 40 40 H 1.08991 * 109.53707 * 178.99045 * 8 7 6 41 41 H 1.09004 * 109.52318 * 52.99329 * 10 9 8 42 42 H 1.09005 * 109.65287 * 292.43724 * 10 9 8 43 43 H 1.09002 * 109.40012 * 288.70075 * 11 10 9 44 44 H 1.09003 * 109.39573 * 168.88005 * 11 10 9 45 45 H 1.08998 * 109.47033 * 209.99519 * 15 14 12 46 46 H 1.08996 * 109.47303 * 329.99971 * 15 14 12 47 47 H 1.08998 * 109.47127 * 299.99861 * 16 15 14 48 48 H 1.08996 * 109.46755 * 60.00036 * 16 15 14 49 49 H 0.96998 * 119.99336 * 180.02562 * 20 19 17 50 50 H 1.09005 * 109.26727 * 101.35104 * 25 14 12 51 51 H 1.09002 * 109.27051 * 220.84851 * 25 14 12 52 52 H 1.08997 * 109.49977 * 177.38883 * 26 9 8 53 53 H 1.08995 * 109.49828 * 297.49501 * 26 9 8 54 54 H 1.09000 * 109.45778 * 305.91637 * 27 6 5 55 55 H 1.08989 * 109.46826 * 65.90330 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 6 4.1576 2.5826 0.0000 6 7 5.6220 2.4666 0.0000 7 6 6.2532 3.7709 -0.2387 8 6 7.7705 3.6401 -0.0857 9 6 8.2918 2.6060 -1.0856 10 6 9.7994 2.4250 -0.8965 11 6 10.2642 1.2607 -1.7750 12 6 9.7280 1.4276 -3.1678 13 8 10.2481 0.7950 -4.0623 14 7 8.7113 2.2343 -3.4743 15 6 8.2537 2.2642 -4.8657 16 6 7.1638 1.2093 -5.0669 17 6 6.6936 1.2397 -6.4983 18 1 7.1281 1.9415 -7.1947 19 6 5.7077 0.3723 -6.9186 20 7 5.1781 -0.4820 -6.0703 21 14 5.1242 0.4104 -8.6927 22 1 6.2666 0.1198 -9.5958 23 1 4.0665 -0.6135 -8.8881 24 1 4.5760 1.7548 -9.0047 25 6 8.0266 3.0877 -2.5111 26 6 7.5829 1.2706 -0.8514 27 6 6.0711 1.4710 -0.9816 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8574 0.6437 -0.8892 34 1 3.8566 0.6441 0.8908 35 1 3.8357 3.1240 0.8895 36 1 3.8363 3.1228 -0.8905 37 1 5.8764 4.4945 0.4842 38 1 6.0177 4.1092 -1.2477 39 1 8.0076 3.3175 0.9281 40 1 8.2409 4.6038 -0.2804 41 1 10.0112 2.2021 0.1493 42 1 10.3181 3.3369 -1.1922 43 1 9.8989 0.3229 -1.3564 44 1 11.3537 1.2432 -1.8062 45 1 7.8510 3.2509 -5.0945 46 1 9.0922 2.0513 -5.5286 47 1 7.5665 0.2227 -4.8380 48 1 6.3253 1.4223 -4.4039 49 1 4.4848 -1.0925 -6.3661 50 1 8.3864 4.1111 -2.6177 51 1 6.9544 3.0614 -2.7055 52 1 7.9191 0.5454 -1.5924 53 1 7.8168 0.9050 0.1484 54 1 5.5621 0.5248 -0.7980 55 1 5.8365 1.8206 -1.9869 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273474993.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:42 Heat of formation + Delta-G solvation = -114.152167 kcal Electronic energy + Delta-G solvation = -31733.433540 eV Core-core repulsion = 27768.665845 eV Total energy + Delta-G solvation = -3964.767695 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.15275 -40.11663 -38.94550 -37.46953 -36.49405 -34.90670 -33.92745 -31.84263 -31.65622 -31.47764 -28.43011 -27.47756 -26.96619 -25.87147 -24.87622 -24.52317 -23.49750 -22.48230 -21.59303 -20.79410 -18.86567 -18.36984 -17.70447 -17.48252 -17.32413 -17.14657 -16.90512 -16.65498 -16.25089 -15.89310 -15.75871 -15.53300 -15.30363 -15.08701 -14.83204 -14.58445 -14.47332 -14.42770 -14.16709 -13.51248 -13.40255 -13.27008 -13.17180 -13.08078 -12.86194 -12.82820 -12.63254 -12.56522 -12.37291 -12.09760 -12.06987 -12.02776 -11.94448 -11.91294 -11.78726 -11.52760 -11.47773 -11.09632 -11.01085 -10.64680 -10.62358 -10.55162 -9.58599 -9.22856 -8.26061 -6.39203 1.34086 1.38898 1.46400 1.70996 2.15111 2.38260 2.64678 3.06756 3.09738 3.54981 3.59163 3.69592 3.77026 3.93278 4.07700 4.10157 4.19163 4.24787 4.28750 4.32854 4.37695 4.43191 4.46942 4.47116 4.50730 4.53137 4.54594 4.59118 4.63227 4.68993 4.73592 4.77909 4.81408 4.85511 4.89607 4.95923 5.00192 5.04565 5.05296 5.13540 5.16820 5.21111 5.27649 5.27999 5.33971 5.40938 5.49081 5.55871 5.77777 6.05974 6.13485 6.17956 6.24400 6.62943 6.75532 7.27645 7.30623 8.85469 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006271 B = 0.004771 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4464.066015 B = 5867.300609 C = 9513.022228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.424 6.424 3 C 0.064 3.936 4 C -0.120 4.120 5 C 0.063 3.937 6 N -0.528 5.528 7 C 0.046 3.954 8 C -0.088 4.088 9 C -0.068 4.068 10 C -0.098 4.098 11 C -0.127 4.127 12 C 0.498 3.502 13 O -0.615 6.615 14 N -0.595 5.595 15 C 0.123 3.877 16 C 0.037 3.963 17 C -0.548 4.548 18 H 0.063 0.937 19 C 0.003 3.997 20 N -0.930 5.930 21 Si 0.968 3.032 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.260 1.260 25 C 0.116 3.884 26 C -0.100 4.100 27 C 0.053 3.947 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.026 0.974 37 H 0.100 0.900 38 H 0.023 0.977 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.054 0.946 47 H -0.030 1.030 48 H -0.007 1.007 49 H 0.264 0.736 50 H 0.086 0.914 51 H 0.056 0.944 52 H 0.034 0.966 53 H 0.093 0.907 54 H 0.066 0.934 55 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 11.991 21.171 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.013 4.013 4 C -0.158 4.158 5 C -0.065 4.065 6 N -0.253 5.253 7 C -0.081 4.081 8 C -0.126 4.126 9 C -0.068 4.068 10 C -0.135 4.135 11 C -0.166 4.166 12 C 0.288 3.712 13 O -0.498 6.498 14 N -0.324 5.324 15 C 0.000 4.000 16 C -0.001 4.001 17 C -0.586 4.586 18 H 0.081 0.919 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.791 3.209 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.184 1.184 25 C -0.006 4.006 26 C -0.137 4.137 27 C -0.075 4.075 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.044 0.956 37 H 0.118 0.882 38 H 0.041 0.959 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.128 0.872 45 H 0.098 0.902 46 H 0.072 0.928 47 H -0.011 1.011 48 H 0.011 0.989 49 H 0.072 0.928 50 H 0.104 0.896 51 H 0.074 0.926 52 H 0.053 0.947 53 H 0.112 0.888 54 H 0.084 0.916 55 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -1.118 11.248 21.226 24.048 hybrid contribution -1.219 -0.408 -2.473 2.787 sum -2.337 10.840 18.753 21.786 Atomic orbital electron populations 1.22919 0.79453 1.03726 1.00919 1.87853 1.21651 1.29212 1.95616 1.22524 0.93405 0.84317 1.01030 1.21597 0.93608 0.98011 1.02560 1.22003 0.87211 0.95642 1.01602 1.62121 1.06176 1.08352 1.48618 1.22294 0.95779 0.90113 0.99940 1.21543 0.93365 0.98487 0.99161 1.20820 0.96626 0.96360 0.93018 1.21671 0.93020 0.97542 1.01284 1.21708 1.03016 1.02493 0.89417 1.21097 0.79263 0.78069 0.92735 1.90679 1.60649 1.47939 1.50577 1.47490 1.32597 1.42249 1.10099 1.21432 0.96920 0.99579 0.82022 1.19033 0.92551 0.92748 0.95724 1.21518 1.20793 1.19847 0.96446 0.91894 1.25998 0.96352 0.94566 1.02594 1.70122 1.27689 1.22060 1.37064 0.85464 0.78013 0.78508 0.78867 1.19471 1.20637 1.18413 1.21771 0.96646 0.93808 0.88334 1.21578 0.93359 0.96646 1.02150 1.22091 0.96636 0.96369 0.92413 0.88893 0.92179 0.93842 0.90726 0.93704 0.93742 0.90289 0.87823 0.95579 0.88195 0.95895 0.88602 0.88595 0.87098 0.89561 0.88170 0.87162 0.90188 0.92766 1.01128 0.98868 0.92780 0.89620 0.92554 0.94689 0.88815 0.91591 0.97601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -11.23 10.70 -148.98 -1.59 -12.82 16 3 C 0.06 1.41 5.94 71.98 0.43 1.84 16 4 C -0.12 -2.91 4.83 30.59 0.15 -2.76 16 5 C 0.06 1.30 5.27 86.30 0.46 1.76 16 6 N -0.53 -11.51 4.80 -896.27 -4.30 -15.81 16 7 C 0.05 0.79 5.18 86.33 0.45 1.24 16 8 C -0.09 -1.21 4.87 30.61 0.15 -1.06 16 9 C -0.07 -1.39 0.51 -52.25 -0.03 -1.41 16 10 C -0.10 -1.64 4.93 30.63 0.15 -1.49 16 11 C -0.13 -3.20 5.40 29.71 0.16 -3.04 16 12 C 0.50 19.28 6.65 87.71 0.58 19.87 16 13 O -0.62 -30.81 16.18 -3.01 -0.05 -30.86 16 14 N -0.59 -22.42 2.67 -826.86 -2.21 -24.63 16 15 C 0.12 5.71 5.16 86.38 0.45 6.16 16 16 C 0.04 2.14 5.29 29.85 0.16 2.30 16 17 C -0.55 -33.03 9.11 25.60 0.23 -32.80 16 18 H 0.06 3.60 7.74 -2.91 -0.02 3.58 16 19 C 0.00 0.19 5.46 84.66 0.46 0.66 16 20 N -0.93 -59.34 13.29 21.45 0.28 -59.05 16 21 Si 0.97 46.10 29.54 68.60 2.03 48.13 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 25 C 0.12 3.22 4.39 86.45 0.38 3.60 16 26 C -0.10 -2.58 4.19 30.61 0.13 -2.45 16 27 C 0.05 1.54 4.61 86.33 0.40 1.94 16 28 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.04 1.39 6.21 -2.38 -0.01 1.38 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.03 0.59 8.08 -2.39 -0.02 0.57 16 37 H 0.10 1.25 8.12 -2.39 -0.02 1.23 16 38 H 0.02 0.47 6.77 -2.39 -0.02 0.45 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.24 8.13 -2.38 -0.02 1.22 16 43 H 0.10 2.51 7.02 -2.39 -0.02 2.49 16 44 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.08 3.32 8.02 -2.39 -0.02 3.30 16 46 H 0.05 2.74 7.13 -2.39 -0.02 2.72 16 47 H -0.03 -1.98 8.14 -2.39 -0.02 -2.00 16 48 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 49 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 50 H 0.09 1.92 8.11 -2.38 -0.02 1.90 16 51 H 0.06 1.82 5.01 -2.39 -0.01 1.81 16 52 H 0.03 1.16 5.93 -2.39 -0.01 1.15 16 53 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 54 H 0.07 2.11 5.81 -2.39 -0.01 2.10 16 55 H 0.01 0.21 6.37 -2.39 -0.02 0.20 16 Total: -1.00 -82.01 412.03 0.94 -81.07 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.84 Total: 17.90 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 5.95 Total: -3.93 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -6.23 Total: -99.49 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.64 Total: -43.68 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -82.01 0.94 -81.07 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273474993.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.081 kcal (2) G-P(sol) polarization free energy of solvation -82.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds