Wall clock time and date at job start Tue Mar 31 2020 22:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00081 * 2 1 4 4 C 1.53007 * 109.47162 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46906 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46897 * 180.02562 * 5 4 3 7 7 N 1.46898 * 109.46956 * 179.97438 * 6 5 4 8 8 C 1.46969 * 110.99896 * 60.06391 * 7 6 5 9 9 C 1.53041 * 109.47686 * 184.60016 * 8 7 6 10 10 C 1.53143 * 109.34142 * 300.16324 * 9 8 7 11 11 C 1.53246 * 109.05708 * 58.33802 * 10 9 8 12 12 C 1.45966 * 110.99681 * 184.56018 * 7 6 5 13 13 C 1.53972 * 110.72352 * 299.74458 * 12 7 6 14 14 C 1.51426 * 104.07247 * 142.24008 * 13 12 7 15 15 O 1.21286 * 124.94716 * 164.54621 * 14 13 12 16 16 N 1.34494 * 110.11237 * 344.28743 * 14 13 12 17 17 C 1.46502 * 124.35601 * 179.63532 * 16 14 13 18 18 C 1.53000 * 109.47286 * 89.97503 * 17 16 14 19 19 C 1.50700 * 109.47040 * 179.97438 * 18 17 16 20 20 H 1.07989 * 120.00140 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99315 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99321 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00475 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47093 * 89.99904 * 23 21 19 25 25 H 1.48507 * 109.46992 * 209.99461 * 23 21 19 26 26 H 1.48493 * 109.46940 * 329.99573 * 23 21 19 27 27 C 1.46919 * 111.29428 * 359.61530 * 16 14 13 28 28 H 1.08992 * 109.47286 * 59.99537 * 1 2 3 29 29 H 1.08999 * 109.47017 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46665 * 299.98941 * 1 2 3 31 31 H 1.09002 * 109.46982 * 60.00494 * 3 2 1 32 32 H 1.08997 * 109.47734 * 300.00216 * 3 2 1 33 33 H 1.09002 * 109.46931 * 60.00263 * 4 3 2 34 34 H 1.08994 * 109.47137 * 300.00179 * 4 3 2 35 35 H 1.08994 * 109.47757 * 59.99738 * 5 4 3 36 36 H 1.09005 * 109.47152 * 299.99372 * 5 4 3 37 37 H 1.09002 * 109.47259 * 59.99423 * 6 5 4 38 38 H 1.08997 * 109.46491 * 299.99737 * 6 5 4 39 39 H 1.08996 * 109.47344 * 304.60729 * 8 7 6 40 40 H 1.09002 * 109.47082 * 64.60552 * 8 7 6 41 41 H 1.08996 * 109.48796 * 60.12402 * 9 8 7 42 42 H 1.08998 * 109.49234 * 180.17568 * 9 8 7 43 43 H 1.08999 * 109.53635 * 178.20853 * 10 9 8 44 44 H 1.08992 * 109.53996 * 298.37893 * 10 9 8 45 45 H 1.09006 * 109.47521 * 183.58845 * 11 10 9 46 46 H 1.09002 * 109.48175 * 63.56336 * 11 10 9 47 47 H 1.09002 * 110.50610 * 23.59663 * 13 12 7 48 48 H 1.08999 * 110.51219 * 260.89325 * 13 12 7 49 49 H 1.09005 * 109.47028 * 209.97707 * 17 16 14 50 50 H 1.09003 * 109.47056 * 329.97095 * 17 16 14 51 51 H 1.08998 * 109.46692 * 300.00427 * 18 17 16 52 52 H 1.08998 * 109.46973 * 59.99969 * 18 17 16 53 53 H 0.97001 * 119.99878 * 180.02562 * 22 21 19 54 54 H 1.08999 * 110.27231 * 135.40500 * 27 16 14 55 55 H 1.08997 * 110.26761 * 257.46882 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6831 2.4615 -0.0013 7 7 6.2805 3.8035 -0.0013 8 6 5.8702 4.5626 1.1883 9 6 6.4167 5.9892 1.0969 10 6 7.9454 5.9426 1.0172 11 6 8.3577 5.1144 -0.2045 12 6 7.7342 3.7288 -0.1109 13 6 8.3304 2.9469 1.0740 14 6 9.4648 2.1546 0.4588 15 8 10.3541 1.6155 1.0828 16 7 9.3395 2.1310 -0.8801 17 6 10.2728 1.4568 -1.7861 18 6 9.8165 0.0131 -2.0065 19 6 10.7763 -0.6802 -2.9389 20 1 11.6267 -0.1448 -3.3343 21 6 10.5690 -1.9983 -3.2861 22 7 11.4062 -2.6032 -4.1003 23 14 9.0983 -2.9245 -2.6015 24 1 7.9403 -2.7603 -3.5165 25 1 9.4335 -4.3662 -2.4814 26 1 8.7522 -2.3835 -1.2627 27 6 8.1460 2.8678 -1.3174 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 1.6887 1.8462 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8568 0.6438 -0.8909 34 1 3.8575 0.6435 0.8890 35 1 3.8365 3.1227 0.8903 36 1 3.8359 3.1237 -0.8896 37 1 6.0040 1.9212 -0.8919 38 1 6.0053 1.9199 0.8880 39 1 4.7820 4.5932 1.2424 40 1 6.2649 4.0791 2.0819 41 1 6.0206 6.4739 0.2046 42 1 6.1152 6.5516 1.9805 43 1 8.3364 6.9553 0.9199 44 1 8.3437 5.4833 1.9218 45 1 9.4436 5.0232 -0.2321 46 1 8.0112 5.6084 -1.1123 47 1 7.5853 2.2768 1.5030 48 1 8.7102 3.6324 1.8316 49 1 10.2942 1.9809 -2.7416 50 1 11.2707 1.4596 -1.3476 51 1 9.7950 -0.5110 -1.0510 52 1 8.8186 0.0103 -2.4449 53 1 11.2603 -3.5304 -4.3449 54 1 8.3856 3.5028 -2.1703 55 1 7.3469 2.1730 -1.5757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273526197.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:06 Heat of formation + Delta-G solvation = -105.682654 kcal Electronic energy + Delta-G solvation = -31121.838786 eV Core-core repulsion = 27157.438357 eV Total energy + Delta-G solvation = -3964.400429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.39814 -39.77135 -38.91993 -37.24429 -36.22870 -35.50998 -33.96975 -33.41426 -31.51302 -29.78602 -29.18066 -27.73248 -27.07839 -26.10222 -25.27984 -23.37123 -23.02186 -22.31056 -21.73498 -20.55468 -19.66563 -19.07496 -17.80040 -17.40132 -17.23592 -17.12587 -16.80109 -16.47624 -16.25399 -16.19657 -15.75300 -15.38136 -15.19404 -15.10071 -14.99178 -14.79473 -14.69587 -14.20738 -14.09034 -13.85845 -13.70985 -13.37333 -13.21736 -13.09468 -12.96018 -12.80180 -12.52157 -12.44873 -12.35911 -12.18961 -12.12456 -12.00717 -11.88944 -11.81249 -11.65816 -11.57108 -11.43248 -11.18510 -11.04847 -10.91384 -10.82904 -10.60611 -9.64573 -9.28258 -8.36349 -6.40903 1.27389 1.31253 1.42343 1.50755 2.01771 2.29103 2.58788 2.94747 2.98558 3.29811 3.48864 3.65325 3.78548 3.86975 3.99514 4.09985 4.16903 4.19464 4.23462 4.30547 4.36271 4.39145 4.42618 4.48925 4.51511 4.53356 4.56081 4.60692 4.63825 4.67363 4.71766 4.75619 4.76375 4.84826 4.86388 4.94373 5.00208 5.01194 5.08436 5.12703 5.14324 5.24419 5.27480 5.32892 5.34669 5.38667 5.44624 5.55371 5.66211 6.04108 6.14628 6.17195 6.21372 6.26932 6.65250 7.11029 7.24232 8.79969 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006751 B = 0.004027 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4146.796464 B = 6950.773878 C =10481.458130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.062 3.938 4 C -0.120 4.120 5 C -0.097 4.097 6 C 0.038 3.962 7 N -0.510 5.510 8 C 0.047 3.953 9 C -0.111 4.111 10 C -0.122 4.122 11 C -0.098 4.098 12 C 0.122 3.878 13 C -0.175 4.175 14 C 0.502 3.498 15 O -0.590 6.590 16 N -0.612 5.612 17 C 0.147 3.853 18 C -0.013 4.013 19 C -0.532 4.532 20 H 0.042 0.958 21 C 0.013 3.987 22 N -0.943 5.943 23 Si 0.945 3.055 24 H -0.256 1.256 25 H -0.281 1.281 26 H -0.265 1.265 27 C 0.098 3.902 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.098 0.902 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.089 0.911 47 H 0.107 0.893 48 H 0.113 0.887 49 H 0.092 0.908 50 H 0.053 0.947 51 H -0.003 1.003 52 H 0.026 0.974 53 H 0.269 0.731 54 H 0.101 0.899 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.250 20.633 11.185 33.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.014 4.014 4 C -0.159 4.159 5 C -0.135 4.135 6 C -0.090 4.090 7 N -0.234 5.234 8 C -0.080 4.080 9 C -0.148 4.148 10 C -0.159 4.159 11 C -0.136 4.136 12 C 0.031 3.969 13 C -0.216 4.216 14 C 0.291 3.709 15 O -0.471 6.471 16 N -0.344 5.344 17 C 0.025 3.975 18 C -0.052 4.052 19 C -0.571 4.571 20 H 0.061 0.939 21 C -0.185 4.185 22 N -0.583 5.583 23 Si 0.769 3.231 24 H -0.180 1.180 25 H -0.206 1.206 26 H -0.190 1.190 27 C -0.024 4.024 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.116 0.884 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.107 0.893 47 H 0.125 0.875 48 H 0.131 0.869 49 H 0.110 0.890 50 H 0.071 0.929 51 H 0.015 0.985 52 H 0.044 0.956 53 H 0.078 0.922 54 H 0.119 0.881 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.787 20.274 10.924 33.109 hybrid contribution 0.389 -1.600 0.632 1.763 sum -23.398 18.674 11.556 32.090 Atomic orbital electron populations 1.22898 0.79588 1.03565 1.00955 1.87855 1.21500 1.29572 1.95638 1.22611 0.93517 0.84083 1.01228 1.21481 0.93717 0.98176 1.02501 1.21389 0.92555 0.95548 1.03986 1.22383 0.95692 0.89880 1.01000 1.61760 1.05111 1.15528 1.40955 1.22344 1.01652 0.94243 0.89760 1.21570 0.94514 0.95451 1.03290 1.21653 0.96904 1.00372 0.96993 1.21447 0.99162 0.92169 1.00820 1.21235 0.88748 0.95630 0.91283 1.23074 0.96956 1.00459 1.01127 1.21573 0.86431 0.79987 0.82937 1.90676 1.39575 1.49974 1.66841 1.48636 1.26705 1.52369 1.06668 1.21208 0.91043 0.92531 0.92693 1.19729 0.96544 0.93863 0.95035 1.21260 1.10862 0.97249 1.27685 0.93948 1.25873 0.99358 0.98469 0.94781 1.70035 1.39017 1.12846 1.36442 0.85738 0.79982 0.77698 0.79703 1.17997 1.20610 1.18994 1.22537 0.86616 0.94996 0.98300 0.93106 0.89179 0.92899 0.91963 0.92241 0.92362 0.92190 0.90002 0.89974 0.90769 0.95063 0.88429 0.94819 0.90570 0.89924 0.90278 0.92491 0.92419 0.89258 0.87547 0.86852 0.88982 0.92853 0.98451 0.95563 0.92247 0.88123 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.43 -8.46 10.70 -148.98 -1.59 -10.06 16 3 C 0.06 0.91 5.94 71.98 0.43 1.34 16 4 C -0.12 -1.96 5.58 30.60 0.17 -1.79 16 5 C -0.10 -1.23 4.99 30.60 0.15 -1.08 16 6 C 0.04 0.64 4.34 86.31 0.37 1.02 16 7 N -0.51 -7.85 4.54 -846.57 -3.84 -11.69 16 8 C 0.05 0.54 5.00 86.30 0.43 0.97 16 9 C -0.11 -1.06 6.07 30.66 0.19 -0.87 16 10 C -0.12 -1.49 5.80 30.72 0.18 -1.31 16 11 C -0.10 -1.58 4.75 30.42 0.14 -1.44 16 12 C 0.12 2.36 0.60 4.06 0.00 2.36 16 13 C -0.17 -4.25 4.58 30.41 0.14 -4.11 16 14 C 0.50 18.26 8.03 87.93 0.71 18.97 16 15 O -0.59 -27.63 17.60 -3.05 -0.05 -27.69 16 16 N -0.61 -21.05 2.94 -818.53 -2.41 -23.46 16 17 C 0.15 6.14 5.87 86.38 0.51 6.64 16 18 C -0.01 -0.66 4.36 29.85 0.13 -0.53 16 19 C -0.53 -31.63 9.66 25.60 0.25 -31.39 16 20 H 0.04 2.71 7.99 -2.92 -0.02 2.69 16 21 C 0.01 0.79 5.47 84.65 0.46 1.25 16 22 N -0.94 -60.11 13.96 21.45 0.30 -59.81 16 23 Si 0.95 46.48 27.47 68.60 1.88 48.37 16 24 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.27 -12.92 6.54 99.48 0.65 -12.27 16 27 C 0.10 2.40 6.38 86.58 0.55 2.95 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 0.78 6.31 -2.39 -0.02 0.77 16 36 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.07 1.51 5.50 -2.39 -0.01 1.50 16 38 H 0.03 0.60 6.17 -2.39 -0.01 0.58 16 39 H 0.10 0.84 6.07 -2.39 -0.01 0.82 16 40 H 0.03 0.43 7.21 -2.39 -0.02 0.42 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 0.77 6.57 -2.39 -0.02 0.75 16 45 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.11 2.51 5.73 -2.39 -0.01 2.49 16 48 H 0.11 2.48 6.24 -2.39 -0.01 2.46 16 49 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 50 H 0.05 2.46 7.94 -2.39 -0.02 2.44 16 51 H 0.00 -0.16 7.20 -2.39 -0.02 -0.17 16 52 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 53 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 54 H 0.10 2.16 7.88 -2.39 -0.02 2.14 16 55 H 0.08 2.06 5.24 -2.39 -0.01 2.04 16 Total: -1.00 -77.29 412.33 1.14 -76.15 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.79 Total: 13.64 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 6.06 Total: -5.45 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -5.95 Total: -94.96 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.65 Total: -37.74 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.88 Total: 48.37 kcal Total: -77.29 1.14 -76.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273526197.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.534 kcal (2) G-P(sol) polarization free energy of solvation -77.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds