Wall clock time and date at job start Tue Mar 31 2020 22:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99695 * 2 1 4 4 C 1.53006 * 109.46928 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47071 * 180.02562 * 4 3 2 6 6 C 1.52989 * 109.47256 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47435 * 180.02562 * 6 5 4 8 8 C 1.46807 * 111.00225 * 170.00433 * 7 6 5 9 9 C 1.53265 * 109.45026 * 189.20144 * 8 7 6 10 10 C 1.53207 * 108.63066 * 304.38309 * 9 8 7 11 11 C 1.52745 * 117.81244 * 265.93297 * 10 9 8 12 12 C 1.52741 * 117.83809 * 196.92084 * 10 9 8 13 13 H 1.08997 * 117.50308 * 0.26322 * 12 10 9 14 14 C 1.50699 * 117.50140 * 215.23912 * 12 10 9 15 15 O 1.21283 * 120.00485 * 359.97438 * 14 12 10 16 16 N 1.34784 * 119.99678 * 179.97438 * 14 12 10 17 17 C 1.46497 * 119.99650 * 179.97438 * 16 14 12 18 18 C 1.53009 * 109.46981 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.47010 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00356 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99591 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99632 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00127 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47155 * 90.00382 * 23 21 19 25 25 H 1.48498 * 109.47319 * 210.00140 * 23 21 19 26 26 H 1.48500 * 109.47325 * 330.00147 * 23 21 19 27 27 C 1.53226 * 114.73854 * 51.37690 * 10 9 8 28 28 C 1.46821 * 111.00350 * 294.64069 * 7 6 5 29 29 H 1.09007 * 109.46988 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47827 * 299.99937 * 1 2 3 31 31 H 1.09004 * 109.47249 * 60.00158 * 1 2 3 32 32 H 1.09000 * 109.47135 * 59.99698 * 3 2 1 33 33 H 1.08994 * 109.47302 * 299.99714 * 3 2 1 34 34 H 1.09000 * 109.46922 * 60.00592 * 4 3 2 35 35 H 1.08997 * 109.46886 * 299.99754 * 4 3 2 36 36 H 1.09000 * 109.47142 * 59.99990 * 5 4 3 37 37 H 1.09004 * 109.46799 * 300.00444 * 5 4 3 38 38 H 1.09000 * 109.47038 * 59.99944 * 6 5 4 39 39 H 1.09003 * 109.47182 * 300.00314 * 6 5 4 40 40 H 1.09002 * 109.47841 * 69.20515 * 8 7 6 41 41 H 1.09005 * 109.47030 * 309.19559 * 8 7 6 42 42 H 1.09007 * 109.61225 * 64.12968 * 9 8 7 43 43 H 1.09004 * 109.61122 * 184.63688 * 9 8 7 44 44 H 1.08994 * 117.50455 * 359.65766 * 11 10 9 45 45 H 1.08999 * 117.50885 * 144.71770 * 11 10 9 46 46 H 0.96995 * 120.00159 * 0.02562 * 16 14 12 47 47 H 1.09004 * 109.47545 * 300.00302 * 17 16 14 48 48 H 1.09003 * 109.47261 * 60.00865 * 17 16 14 49 49 H 1.08998 * 109.47098 * 300.00732 * 18 17 16 50 50 H 1.09003 * 109.46677 * 60.00189 * 18 17 16 51 51 H 0.96998 * 119.99892 * 179.97438 * 22 21 19 52 52 H 1.09001 * 109.61163 * 68.37132 * 27 10 9 53 53 H 1.08994 * 109.61098 * 188.71478 * 27 10 9 54 54 H 1.09001 * 109.47345 * 50.79960 * 28 7 6 55 55 H 1.09004 * 109.47261 * 290.79642 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 6 5.6828 2.4618 0.0026 7 7 6.2803 3.8038 0.0038 8 6 7.7272 3.7353 0.2430 9 6 8.2751 5.1493 0.4657 10 6 7.8962 6.0164 -0.7391 11 6 8.9129 6.1461 -1.8717 12 6 8.6501 7.3299 -0.9378 13 1 9.4240 7.5808 -0.2124 14 6 7.8781 8.4980 -1.4952 15 8 6.7030 8.3735 -1.7680 16 7 8.4937 9.6810 -1.6903 17 6 7.7433 10.8164 -2.2326 18 6 8.6696 12.0281 -2.3550 19 6 7.8975 13.1962 -2.9123 20 1 6.8512 13.0854 -3.1553 21 6 8.5275 14.4062 -3.1128 22 7 7.8536 15.4258 -3.5987 23 14 10.3376 14.5977 -2.6931 24 1 11.1601 14.2547 -3.8810 25 1 10.6072 16.0022 -2.2933 26 1 10.6846 13.6885 -1.5715 27 6 6.4107 5.9808 -1.1130 28 6 5.9734 4.5176 -1.2419 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8574 0.6437 -0.8892 35 1 3.8567 0.6440 0.8909 36 1 3.8357 3.1232 0.8913 37 1 3.8364 3.1236 -0.8887 38 1 6.0052 1.9209 -0.8872 39 1 6.0037 1.9207 0.8928 40 1 8.2177 3.2875 -0.6214 41 1 7.9210 3.1270 1.1265 42 1 7.8403 5.5716 1.3717 43 1 9.3602 5.1102 0.5617 44 1 9.8599 5.6181 -1.7609 45 1 8.5274 6.2124 -2.8891 46 1 9.4336 9.7805 -1.4725 47 1 7.3528 10.5572 -3.2168 48 1 6.9159 11.0572 -1.5652 49 1 9.0605 12.2875 -1.3711 50 1 9.4968 11.7871 -3.0226 51 1 8.2967 16.2771 -3.7394 52 1 5.8256 6.4702 -0.3344 53 1 6.2598 6.4954 -2.0619 54 1 4.9008 4.4742 -1.4308 55 1 6.5073 4.0504 -2.0695 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273526224.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:54 Heat of formation + Delta-G solvation = -96.295782 kcal Electronic energy + Delta-G solvation = -28881.433210 eV Core-core repulsion = 24917.439826 eV Total energy + Delta-G solvation = -3963.993384 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.48947 -39.80419 -38.95620 -37.61661 -36.49417 -34.97008 -34.78472 -32.20835 -31.87980 -31.22470 -28.67314 -27.30840 -26.74335 -24.67731 -24.41536 -24.01638 -22.71576 -22.49923 -21.68985 -21.05423 -19.56356 -19.01294 -17.99923 -17.28877 -17.24649 -17.09120 -16.55736 -16.43816 -16.24032 -16.12440 -15.84072 -15.64804 -15.36230 -15.27301 -14.93049 -14.63961 -14.39040 -14.33470 -13.99396 -13.63232 -13.37788 -13.33267 -13.12252 -13.03873 -12.94823 -12.69298 -12.44285 -12.33814 -12.22058 -12.16982 -12.10053 -11.97905 -11.86635 -11.77227 -11.64324 -11.52921 -11.26146 -10.88428 -10.79988 -10.76386 -10.64714 -10.38890 -10.01082 -9.18379 -8.31262 -6.38786 1.38210 1.40991 1.52307 1.55644 2.24961 2.35964 2.68764 2.84675 3.03830 3.11369 3.62181 3.70772 3.87135 3.92060 3.96231 4.00233 4.13716 4.25366 4.32157 4.34905 4.36773 4.37422 4.41541 4.47545 4.48954 4.52124 4.53997 4.62265 4.69935 4.71516 4.73373 4.76679 4.83673 4.84158 4.88093 4.90211 4.96012 5.02086 5.05324 5.14143 5.15012 5.25582 5.30546 5.36197 5.38852 5.42307 5.42830 5.54426 5.67046 6.19300 6.20166 6.20898 6.26001 6.64267 6.71470 7.25836 7.35281 8.85613 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018957 B = 0.001607 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.688809 B =17424.402330 C =18675.481747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.057 3.943 4 C -0.109 4.109 5 C -0.109 4.109 6 C 0.060 3.940 7 N -0.551 5.551 8 C 0.062 3.938 9 C -0.073 4.073 10 C -0.090 4.090 11 C -0.131 4.131 12 C -0.188 4.188 13 H 0.150 0.850 14 C 0.529 3.471 15 O -0.580 6.580 16 N -0.715 5.715 17 C 0.146 3.854 18 C -0.012 4.012 19 C -0.541 4.541 20 H 0.027 0.973 21 C 0.005 3.995 22 N -0.950 5.950 23 Si 0.960 3.040 24 H -0.265 1.265 25 H -0.286 1.286 26 H -0.237 1.237 27 C -0.070 4.070 28 C 0.062 3.938 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.085 0.915 40 H 0.038 0.962 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.134 0.866 45 H 0.083 0.917 46 H 0.413 0.587 47 H 0.041 0.959 48 H 0.041 0.959 49 H 0.036 0.964 50 H 0.035 0.965 51 H 0.268 0.732 52 H 0.046 0.954 53 H 0.066 0.934 54 H 0.073 0.927 55 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.112 -34.068 10.747 35.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.019 4.019 4 C -0.147 4.147 5 C -0.147 4.147 6 C -0.067 4.067 7 N -0.276 5.276 8 C -0.066 4.066 9 C -0.110 4.110 10 C -0.091 4.091 11 C -0.169 4.169 12 C -0.209 4.209 13 H 0.168 0.832 14 C 0.317 3.683 15 O -0.461 6.461 16 N -0.366 5.366 17 C 0.022 3.978 18 C -0.049 4.049 19 C -0.580 4.580 20 H 0.045 0.955 21 C -0.192 4.192 22 N -0.590 5.590 23 Si 0.782 3.218 24 H -0.189 1.189 25 H -0.212 1.212 26 H -0.160 1.160 27 C -0.108 4.108 28 C -0.066 4.066 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.104 0.896 40 H 0.057 0.943 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.152 0.848 45 H 0.102 0.898 46 H 0.249 0.751 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.077 0.923 52 H 0.065 0.935 53 H 0.084 0.916 54 H 0.091 0.909 55 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.808 -33.861 10.883 35.576 hybrid contribution 0.432 1.024 -0.920 1.442 sum -0.376 -32.837 9.963 34.318 Atomic orbital electron populations 1.22913 0.79686 1.03786 1.00735 1.87817 1.21348 1.29082 1.95604 1.22636 0.94468 0.84170 1.00666 1.21391 0.92686 0.97364 1.03259 1.21449 0.94671 0.95982 1.02596 1.22063 0.94334 0.88934 1.01382 1.61764 1.12809 1.17710 1.35319 1.22097 0.86475 0.96814 1.01204 1.21256 1.01299 0.93381 0.95108 1.21572 0.93543 0.95262 0.98693 1.23165 1.01580 0.97314 0.94806 1.22341 1.04508 0.87921 1.06090 0.83226 1.20430 0.86955 0.83887 0.76989 1.90643 1.18104 1.83816 1.53489 1.46068 1.14857 1.10656 1.65025 1.20984 0.94654 0.85288 0.96842 1.19641 0.95669 0.92010 0.97628 1.21264 0.97162 0.96171 1.43373 0.95466 1.26086 1.04192 0.94949 0.93994 1.70079 1.39340 1.03102 1.46509 0.85530 0.78154 0.77930 0.80210 1.18944 1.21166 1.16010 1.21205 0.93059 0.94924 1.01606 1.22118 1.00583 0.93753 0.90107 0.88500 0.93274 0.93479 0.92737 0.93124 0.91440 0.90820 0.91334 0.92231 0.94722 0.89623 0.94329 0.89114 0.91325 0.88714 0.84788 0.89837 0.75099 0.94063 0.94104 0.94554 0.94664 0.92310 0.93483 0.91604 0.90877 0.94952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.07 10.70 -148.98 -1.59 -8.66 16 3 C 0.06 0.79 5.94 71.98 0.43 1.22 16 4 C -0.11 -1.37 5.58 30.60 0.17 -1.20 16 5 C -0.11 -1.46 5.14 30.59 0.16 -1.30 16 6 C 0.06 0.80 4.96 86.30 0.43 1.23 16 7 N -0.55 -9.29 4.59 -895.62 -4.11 -13.40 16 8 C 0.06 0.82 5.49 86.41 0.47 1.30 16 9 C -0.07 -1.05 5.87 30.75 0.18 -0.87 16 10 C -0.09 -1.78 2.02 -52.21 -0.11 -1.89 16 11 C -0.13 -2.29 9.62 30.52 0.29 -1.99 16 12 C -0.19 -3.96 5.92 -11.61 -0.07 -4.03 16 13 H 0.15 2.28 8.14 -2.39 -0.02 2.26 16 14 C 0.53 16.68 7.59 87.66 0.67 17.35 16 15 O -0.58 -22.99 13.13 -3.04 -0.04 -23.03 16 16 N -0.72 -22.71 5.56 -463.03 -2.57 -25.28 16 17 C 0.15 6.08 5.61 86.38 0.48 6.56 16 18 C -0.01 -0.53 4.16 29.85 0.12 -0.40 16 19 C -0.54 -31.24 9.66 25.60 0.25 -30.99 16 20 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 21 C 0.00 0.29 5.47 84.66 0.46 0.75 16 22 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 23 Si 0.96 42.40 27.47 68.60 1.88 44.28 16 24 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 27 C -0.07 -1.78 4.33 30.76 0.13 -1.65 16 28 C 0.06 1.25 5.35 86.40 0.46 1.71 16 29 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.88 6.36 -2.38 -0.02 0.87 16 38 H 0.03 0.45 8.13 -2.39 -0.02 0.44 16 39 H 0.09 0.95 7.94 -2.39 -0.02 0.93 16 40 H 0.04 0.50 8.11 -2.39 -0.02 0.48 16 41 H 0.09 0.94 7.95 -2.38 -0.02 0.92 16 42 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.09 0.90 8.08 -2.38 -0.02 0.88 16 44 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.41 10.24 8.47 -92.71 -0.79 9.46 16 47 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 48 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 50 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 51 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 52 H 0.05 1.42 8.12 -2.39 -0.02 1.40 16 53 H 0.07 2.06 5.99 -2.39 -0.01 2.04 16 54 H 0.07 1.47 6.08 -2.39 -0.01 1.46 16 55 H 0.03 0.63 8.11 -2.38 -0.02 0.61 16 Total: -1.00 -73.74 428.28 -0.35 -74.09 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.00 Total: 23.92 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 5.79 Total: -12.68 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -6.38 Total: -97.92 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.63 Total: -31.69 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Total: -73.74 -0.35 -74.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273526224.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.210 kcal (2) G-P(sol) polarization free energy of solvation -73.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds