Wall clock time and date at job start Tue Mar 31 2020 22:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00020 * 2 1 4 4 C 1.52997 * 109.47236 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47346 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47346 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.47526 * 183.23513 * 6 5 4 8 8 C 1.46812 * 110.99935 * 301.49536 * 7 6 5 9 9 C 1.53258 * 109.44580 * 189.19190 * 8 7 6 10 10 C 1.53215 * 108.62122 * 304.39963 * 9 8 7 11 11 C 1.52763 * 117.79678 * 266.01914 * 10 9 8 12 12 C 1.52738 * 117.84373 * 197.01045 * 10 9 8 13 13 H 1.08997 * 117.49684 * 215.21553 * 12 10 9 14 14 C 1.50699 * 117.50893 * 0.27239 * 12 10 9 15 15 O 1.21281 * 119.99482 * 0.02562 * 14 12 10 16 16 N 1.34767 * 120.00149 * 180.02562 * 14 12 10 17 17 C 1.46499 * 120.00449 * 179.97438 * 16 14 12 18 18 C 1.52993 * 109.47651 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.47351 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99992 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99865 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99706 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00394 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47256 * 90.00160 * 23 21 19 25 25 H 1.48503 * 109.47411 * 210.00233 * 23 21 19 26 26 H 1.48498 * 109.47072 * 330.00355 * 23 21 19 27 27 C 1.53215 * 114.73400 * 51.42456 * 10 9 8 28 28 C 1.46812 * 110.99902 * 66.18090 * 7 6 5 29 29 H 1.08999 * 109.46889 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47203 * 300.00467 * 1 2 3 31 31 H 1.09001 * 109.47144 * 60.00598 * 1 2 3 32 32 H 1.09000 * 109.46825 * 299.99564 * 3 2 1 33 33 H 1.08996 * 109.47619 * 59.99836 * 3 2 1 34 34 H 1.09001 * 109.47413 * 300.00073 * 4 3 2 35 35 H 1.09007 * 109.47545 * 59.99753 * 4 3 2 36 36 H 1.09000 * 109.46974 * 299.99731 * 5 4 3 37 37 H 1.08996 * 109.47360 * 59.99935 * 5 4 3 38 38 H 1.09003 * 109.47029 * 303.23245 * 6 5 4 39 39 H 1.08997 * 109.47265 * 63.23541 * 6 5 4 40 40 H 1.08998 * 109.47757 * 309.18817 * 8 7 6 41 41 H 1.09000 * 109.47477 * 69.20093 * 8 7 6 42 42 H 1.09002 * 109.61164 * 184.65719 * 9 8 7 43 43 H 1.08999 * 109.61245 * 64.14013 * 9 8 7 44 44 H 1.09000 * 117.50553 * 359.63910 * 11 10 9 45 45 H 1.08995 * 117.50967 * 144.66670 * 11 10 9 46 46 H 0.97007 * 119.99951 * 0.02562 * 16 14 12 47 47 H 1.09005 * 109.46920 * 300.00829 * 17 16 14 48 48 H 1.09005 * 109.46994 * 59.99939 * 17 16 14 49 49 H 1.09001 * 109.46697 * 300.00009 * 18 17 16 50 50 H 1.08997 * 109.47476 * 59.99536 * 18 17 16 51 51 H 0.96998 * 119.99785 * 180.02562 * 22 21 19 52 52 H 1.08993 * 109.61270 * 188.83721 * 27 10 9 53 53 H 1.08997 * 109.60882 * 68.31259 * 27 10 9 54 54 H 1.09001 * 109.47948 * 290.80277 * 28 7 6 55 55 H 1.09003 * 109.47313 * 50.81574 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6829 2.4616 0.0013 7 7 6.2802 3.8014 0.0788 8 6 5.8461 4.6370 -1.0476 9 6 6.6590 5.9362 -1.0621 10 6 6.5099 6.6219 0.2999 11 6 5.4181 7.6799 0.4491 12 6 6.8897 8.0978 0.4009 13 1 7.3471 8.4373 1.3302 14 6 7.3795 8.7778 -0.8516 15 8 7.4594 8.1539 -1.8886 16 7 7.7287 10.0791 -0.8194 17 6 8.2053 10.7400 -2.0368 18 6 8.5325 12.2024 -1.7286 19 6 9.0222 12.8824 -2.9811 20 1 9.0927 12.3272 -3.9047 21 6 9.3793 14.2137 -2.9481 22 7 9.8062 14.8073 -4.0413 23 14 9.2554 15.1748 -1.3511 24 1 10.5374 15.0689 -0.6090 25 1 8.9743 16.6015 -1.6524 26 1 8.1563 14.6179 -0.5223 27 6 6.8034 5.7232 1.5056 28 6 5.9819 4.4366 1.3684 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6886 1.8463 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.8567 0.6439 0.8908 35 1 3.8575 0.6435 -0.8891 36 1 3.8365 3.1227 -0.8905 37 1 3.8358 3.1239 0.8895 38 1 6.0000 1.8721 0.8616 39 1 6.0093 1.9708 -0.9156 40 1 6.0048 4.0985 -1.9819 41 1 4.7873 4.8720 -0.9388 42 1 6.2835 6.5939 -1.8460 43 1 7.7093 5.7085 -1.2441 44 1 4.8044 7.8967 -0.4252 45 1 4.9072 7.7441 1.4097 46 1 7.6651 10.5779 0.0102 47 1 9.1020 10.2355 -2.3968 48 1 7.4306 10.6941 -2.8023 49 1 7.6360 12.7071 -1.3684 50 1 9.3072 12.2480 -0.9633 51 1 10.0578 15.7438 -4.0180 52 1 6.5235 6.2397 2.4236 53 1 7.8653 5.4785 1.5295 54 1 4.9198 4.6765 1.4183 55 1 6.2387 3.7534 2.1780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273526225.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:58 Heat of formation + Delta-G solvation = -96.410744 kcal Electronic energy + Delta-G solvation = -29069.679673 eV Core-core repulsion = 25105.681304 eV Total energy + Delta-G solvation = -3963.998369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51087 -39.93360 -38.95193 -37.71028 -36.49381 -34.82738 -34.72275 -32.20334 -31.87097 -31.21843 -28.54181 -27.31359 -26.68227 -24.66093 -24.47294 -24.23220 -22.79521 -22.56662 -21.82083 -21.00031 -19.31832 -19.01168 -17.99990 -17.32229 -17.24062 -16.95363 -16.57985 -16.45344 -16.24567 -16.14013 -15.82922 -15.68074 -15.39793 -15.27424 -14.89656 -14.64976 -14.37213 -14.21359 -13.98230 -13.75398 -13.36910 -13.17805 -13.12489 -13.03073 -12.92596 -12.84042 -12.49132 -12.32149 -12.23482 -12.18098 -12.09803 -12.07393 -11.95471 -11.77201 -11.53535 -11.42950 -11.36390 -10.90115 -10.79949 -10.77395 -10.65913 -10.39042 -10.01080 -9.10686 -8.31219 -6.38790 1.38250 1.40938 1.52246 1.55978 2.25213 2.35985 2.75971 2.84617 3.03881 3.09963 3.62962 3.70937 3.88153 3.90950 3.95514 4.00421 4.11941 4.23056 4.29215 4.34607 4.35876 4.37634 4.40678 4.42011 4.49307 4.50649 4.57894 4.61152 4.65904 4.71681 4.73386 4.80256 4.81452 4.84458 4.86392 4.94708 4.97652 5.04806 5.06844 5.12710 5.14991 5.25146 5.27815 5.35062 5.38949 5.42065 5.42935 5.54923 5.67134 6.19652 6.20923 6.21392 6.27188 6.64367 6.71550 7.25874 7.35524 8.85684 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025278 B = 0.001563 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.409204 B =17905.602675 C =18124.086654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.057 3.943 4 C -0.109 4.109 5 C -0.145 4.145 6 C 0.059 3.941 7 N -0.550 5.550 8 C 0.065 3.935 9 C -0.072 4.072 10 C -0.089 4.089 11 C -0.130 4.130 12 C -0.189 4.189 13 H 0.150 0.850 14 C 0.529 3.471 15 O -0.580 6.580 16 N -0.715 5.715 17 C 0.146 3.854 18 C -0.012 4.012 19 C -0.541 4.541 20 H 0.027 0.973 21 C 0.005 3.995 22 N -0.951 5.951 23 Si 0.960 3.040 24 H -0.265 1.265 25 H -0.286 1.286 26 H -0.237 1.237 27 C -0.075 4.075 28 C 0.060 3.940 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.083 0.917 45 H 0.134 0.866 46 H 0.413 0.587 47 H 0.040 0.960 48 H 0.041 0.959 49 H 0.037 0.963 50 H 0.035 0.965 51 H 0.268 0.732 52 H 0.094 0.906 53 H 0.066 0.934 54 H 0.044 0.956 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.416 -27.414 19.367 37.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.019 4.019 4 C -0.147 4.147 5 C -0.184 4.184 6 C -0.069 4.069 7 N -0.273 5.273 8 C -0.063 4.063 9 C -0.109 4.109 10 C -0.089 4.089 11 C -0.167 4.167 12 C -0.210 4.210 13 H 0.167 0.833 14 C 0.317 3.683 15 O -0.461 6.461 16 N -0.366 5.366 17 C 0.022 3.978 18 C -0.049 4.049 19 C -0.580 4.580 20 H 0.045 0.955 21 C -0.192 4.192 22 N -0.590 5.590 23 Si 0.782 3.218 24 H -0.190 1.190 25 H -0.212 1.212 26 H -0.160 1.160 27 C -0.112 4.112 28 C -0.068 4.068 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.152 0.848 46 H 0.249 0.751 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.077 0.923 52 H 0.112 0.888 53 H 0.085 0.915 54 H 0.062 0.938 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.663 -27.888 18.513 37.392 hybrid contribution -0.625 1.479 -0.232 1.622 sum -17.288 -26.409 18.281 36.477 Atomic orbital electron populations 1.22909 0.79678 1.03775 1.00745 1.87828 1.21368 1.29157 1.95594 1.22655 0.94506 0.84170 1.00560 1.21381 0.92641 0.97417 1.03243 1.22088 0.97255 0.96629 1.02428 1.22221 0.91341 0.90099 1.03248 1.61973 1.59410 1.03168 1.02758 1.22055 0.96890 0.93424 0.93955 1.21221 0.99663 0.95098 0.94963 1.21555 1.01820 0.87971 0.97584 1.23167 0.88593 1.00406 1.04574 1.22345 1.02067 0.99429 0.97133 0.83264 1.20433 0.76378 0.81477 0.89986 1.90646 1.55628 1.64955 1.34853 1.46068 1.66131 1.10914 1.13493 1.20981 0.97299 0.93178 0.86314 1.19637 0.97403 0.91652 0.96249 1.21265 1.44572 0.96194 0.95948 0.95469 1.26083 0.93655 0.98704 1.00769 1.70080 1.45757 1.12554 1.30655 0.85529 0.80237 0.77166 0.78886 1.18975 1.21155 1.15984 1.21270 1.00748 0.94152 0.95039 1.22116 0.98004 0.95516 0.91119 0.88606 0.93167 0.93487 0.93268 0.92643 0.90862 0.91580 0.92192 0.91148 0.89633 0.91024 0.91516 0.94167 0.91617 0.93665 0.89805 0.84756 0.75098 0.94137 0.94058 0.94517 0.94689 0.92309 0.88752 0.91492 0.93819 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.63 10.70 -148.98 -1.59 -8.22 16 3 C 0.06 0.70 5.94 71.98 0.43 1.13 16 4 C -0.11 -1.22 5.58 30.59 0.17 -1.05 16 5 C -0.14 -1.58 4.51 30.59 0.14 -1.44 16 6 C 0.06 0.74 5.33 86.30 0.46 1.20 16 7 N -0.55 -9.05 4.78 -895.64 -4.28 -13.33 16 8 C 0.06 1.27 4.76 86.41 0.41 1.68 16 9 C -0.07 -1.81 4.32 30.75 0.13 -1.68 16 10 C -0.09 -1.73 2.02 -52.20 -0.11 -1.84 16 11 C -0.13 -2.20 9.63 30.53 0.29 -1.91 16 12 C -0.19 -3.95 5.92 -11.61 -0.07 -4.02 16 13 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 14 C 0.53 16.66 7.59 87.66 0.67 17.33 16 15 O -0.58 -23.04 13.13 -3.03 -0.04 -23.08 16 16 N -0.72 -22.70 5.56 -463.07 -2.57 -25.27 16 17 C 0.15 6.08 5.61 86.38 0.48 6.57 16 18 C -0.01 -0.52 4.16 29.85 0.12 -0.40 16 19 C -0.54 -31.26 9.66 25.60 0.25 -31.01 16 20 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 21 C 0.01 0.29 5.47 84.65 0.46 0.75 16 22 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 23 Si 0.96 42.39 27.47 68.60 1.88 44.27 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.24 -9.28 6.54 99.48 0.65 -8.63 16 27 C -0.07 -1.06 5.87 30.75 0.18 -0.88 16 28 C 0.06 0.77 4.99 86.41 0.43 1.20 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.82 8.14 -2.38 -0.02 0.81 16 36 H 0.06 0.76 6.78 -2.39 -0.02 0.74 16 37 H 0.07 0.71 6.61 -2.39 -0.02 0.70 16 38 H 0.09 0.92 8.02 -2.39 -0.02 0.90 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 41 H 0.04 0.73 6.86 -2.39 -0.02 0.71 16 42 H 0.07 2.04 6.00 -2.39 -0.01 2.03 16 43 H 0.04 1.37 8.12 -2.39 -0.02 1.35 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.41 10.22 8.47 -92.70 -0.79 9.44 16 47 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 48 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 49 H 0.04 1.55 7.20 -2.39 -0.02 1.53 16 50 H 0.03 1.46 7.57 -2.39 -0.02 1.44 16 51 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 52 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 53 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 54 H 0.04 0.51 6.84 -2.39 -0.02 0.49 16 55 H 0.09 0.90 8.00 -2.39 -0.02 0.88 16 Total: -1.00 -74.05 425.64 -0.60 -74.65 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.00 Total: 23.14 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.70 Total: -12.87 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -6.55 Total: -97.88 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.63 Total: -31.30 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.27 kcal Total: -74.05 -0.60 -74.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273526225.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.764 kcal (2) G-P(sol) polarization free energy of solvation -74.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds