Wall clock time and date at job start Tue Mar 31 2020 22:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99771 * 2 1 4 4 C 1.53001 * 109.47145 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47166 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47167 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99928 * 359.97438 * 6 5 4 8 8 N 1.34784 * 120.00014 * 180.02562 * 6 5 4 9 9 C 1.46922 * 120.62952 * 354.21104 * 8 6 5 10 10 C 1.53188 * 108.77815 * 126.36935 * 9 8 6 11 11 C 1.53049 * 109.33832 * 54.61681 * 10 9 8 12 12 C 1.53043 * 109.53521 * 298.68439 * 11 10 9 13 13 C 1.46919 * 120.62740 * 174.18412 * 8 6 5 14 14 H 1.09006 * 109.58622 * 113.84144 * 13 8 6 15 15 C 1.53004 * 109.59144 * 353.42228 * 13 8 6 16 16 H 1.08995 * 109.49508 * 54.75363 * 15 13 8 17 17 C 1.53046 * 109.49478 * 294.69024 * 15 13 8 18 18 C 1.53032 * 109.53804 * 178.71536 * 17 15 13 19 19 C 1.53185 * 109.33983 * 61.31685 * 18 17 15 20 20 N 1.46926 * 108.77652 * 305.38022 * 19 18 17 21 21 C 1.36936 * 120.62812 * 233.58221 * 20 19 18 22 22 H 1.08000 * 120.00268 * 36.49781 * 21 20 19 23 23 C 1.38813 * 120.00276 * 216.48819 * 21 20 19 24 24 N 1.31618 * 119.99263 * 14.91560 * 23 21 20 25 25 Si 1.86796 * 120.00315 * 194.91076 * 23 21 20 26 26 H 1.48502 * 109.47032 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47257 * 120.00453 * 25 23 21 28 28 H 1.48503 * 109.47014 * 240.00468 * 25 23 21 29 29 C 1.46917 * 118.73991 * 53.61056 * 20 19 18 30 30 H 1.08997 * 109.47454 * 300.00152 * 1 2 3 31 31 H 1.09002 * 109.47106 * 60.00684 * 1 2 3 32 32 H 1.09001 * 109.46604 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47559 * 59.99773 * 3 2 1 34 34 H 1.09004 * 109.47055 * 299.99404 * 3 2 1 35 35 H 1.08998 * 109.47606 * 59.99507 * 4 3 2 36 36 H 1.09004 * 109.46653 * 299.99646 * 4 3 2 37 37 H 1.09005 * 109.47165 * 60.00040 * 5 4 3 38 38 H 1.08996 * 109.47137 * 299.99774 * 5 4 3 39 39 H 1.09001 * 109.58890 * 6.58082 * 9 8 6 40 40 H 1.09003 * 109.58262 * 246.15841 * 9 8 6 41 41 H 1.08994 * 109.49997 * 174.58096 * 10 9 8 42 42 H 1.08998 * 109.49846 * 294.65469 * 10 9 8 43 43 H 1.08991 * 109.45770 * 58.66956 * 11 10 9 44 44 H 1.09001 * 109.45939 * 178.63476 * 11 10 9 45 45 H 1.09001 * 109.47386 * 301.36637 * 12 11 10 46 46 H 1.08998 * 109.51967 * 181.30300 * 12 11 10 47 47 H 1.08996 * 109.45688 * 298.70659 * 17 15 13 48 48 H 1.09002 * 109.45568 * 58.66344 * 17 15 13 49 49 H 1.09005 * 109.47230 * 301.36240 * 18 17 15 50 50 H 1.08997 * 109.49607 * 181.28531 * 18 17 15 51 51 H 1.09004 * 109.58489 * 185.58893 * 19 18 17 52 52 H 1.09000 * 109.70360 * 65.24109 * 19 18 17 53 53 H 0.97008 * 119.99846 * 179.97438 * 24 23 21 54 54 H 1.09001 * 109.58963 * 186.60349 * 29 20 19 55 55 H 1.09004 * 109.58828 * 66.17605 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 6 5.6600 2.4635 -0.0013 7 8 6.1816 1.3685 -0.0004 8 7 6.4239 3.5739 -0.0013 9 6 5.8120 4.9035 -0.1288 10 6 6.2881 5.7791 1.0345 11 6 7.8182 5.7919 1.0660 12 6 8.3374 4.3693 1.2872 13 6 7.8844 3.4777 0.1268 14 1 8.3551 3.8134 -0.7973 15 6 8.2801 2.0271 0.4097 16 1 7.8660 1.3797 -0.3632 17 6 7.7336 1.6057 1.7758 18 6 8.1015 0.1450 2.0458 19 6 9.6264 0.0019 2.0693 20 7 10.1712 0.5394 0.8151 21 6 11.0030 -0.2182 0.0345 22 1 10.8373 -1.2814 -0.0576 23 6 12.0591 0.3804 -0.6388 24 7 12.4452 1.5949 -0.3099 25 14 12.9324 -0.5378 -2.0112 26 1 12.3113 -1.8754 -2.1852 27 1 12.8125 0.2314 -3.2758 28 1 14.3672 -0.6992 -1.6640 29 6 9.8072 1.9053 0.4147 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8568 0.6439 -0.8908 36 1 3.8574 0.6437 0.8892 37 1 3.8364 3.1236 0.8887 38 1 3.8357 3.1231 -0.8913 39 1 4.7264 4.8108 -0.0959 40 1 6.1136 5.3555 -1.0737 41 1 5.9186 6.7956 0.8997 42 1 5.9083 5.3754 1.9730 43 1 8.1977 6.1731 0.1180 44 1 8.1594 6.4339 1.8781 45 1 7.9387 3.9784 2.2234 46 1 9.4263 4.3820 1.3327 47 1 8.1667 2.2380 2.5508 48 1 6.6491 1.7148 1.7824 49 1 7.6890 -0.4852 1.2578 50 1 7.6924 -0.1611 3.0086 51 1 9.8932 -1.0509 2.1622 52 1 10.0348 0.5580 2.9131 53 1 13.1834 2.0132 -0.7801 54 1 10.1932 2.1084 -0.5842 55 1 10.2283 2.6184 1.1235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273598740.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:32 Heat of formation + Delta-G solvation = -68.728359 kcal Electronic energy + Delta-G solvation = -32149.516203 eV Core-core repulsion = 28186.718232 eV Total energy + Delta-G solvation = -3962.797971 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.98501 -39.14783 -38.67263 -38.19906 -35.40859 -34.46298 -33.66843 -33.38739 -31.77951 -29.84178 -28.89010 -27.16890 -26.87231 -25.65494 -24.75386 -23.90853 -23.14690 -22.04935 -21.73015 -20.42109 -19.61634 -18.59634 -17.81472 -17.35699 -17.23084 -16.79722 -16.57006 -16.47839 -15.84539 -15.67526 -15.53128 -15.33477 -15.21996 -14.98958 -14.68758 -14.47702 -14.41341 -14.09225 -13.96809 -13.72497 -13.18764 -13.08672 -12.95739 -12.89423 -12.81999 -12.66920 -12.58877 -12.37438 -12.21719 -12.05258 -11.98172 -11.92282 -11.82697 -11.81350 -11.55150 -11.54133 -11.20961 -10.92771 -10.89332 -10.58528 -10.56480 -9.72046 -9.36389 -8.52642 -7.87400 -5.43210 1.40723 1.41732 1.54075 1.81208 2.08238 2.47680 2.91009 3.23664 3.56691 3.77781 3.90858 3.92813 4.03953 4.05316 4.13646 4.19663 4.27711 4.29258 4.34633 4.38372 4.47265 4.51510 4.53672 4.55912 4.59787 4.62019 4.69208 4.70522 4.76326 4.78838 4.88323 4.89860 4.93206 4.97345 5.00795 5.07842 5.16072 5.17960 5.19189 5.23013 5.29409 5.32910 5.38394 5.48626 5.51450 5.51831 5.57034 5.68389 5.72377 6.02257 6.31293 6.42291 6.67190 7.15654 7.45243 7.84545 8.42765 9.15787 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.003518 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.151351 B = 7956.423110 C = 9497.762957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.065 3.935 4 C -0.101 4.101 5 C -0.123 4.123 6 C 0.493 3.507 7 O -0.552 6.552 8 N -0.606 5.606 9 C 0.100 3.900 10 C -0.126 4.126 11 C -0.117 4.117 12 C -0.127 4.127 13 C 0.162 3.838 14 H 0.050 0.950 15 C -0.099 4.099 16 H 0.080 0.920 17 C -0.073 4.073 18 C -0.116 4.116 19 C 0.144 3.856 20 N -0.608 5.608 21 C -0.271 4.271 22 H 0.051 0.949 23 C -0.040 4.040 24 N -0.927 5.927 25 Si 0.966 3.034 26 H -0.270 1.270 27 H -0.286 1.286 28 H -0.284 1.284 29 C 0.195 3.805 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.037 0.963 48 H 0.067 0.933 49 H 0.039 0.961 50 H 0.066 0.934 51 H 0.043 0.957 52 H 0.010 0.990 53 H 0.251 0.749 54 H 0.027 0.973 55 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.366 12.092 2.149 28.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.011 4.011 4 C -0.139 4.139 5 C -0.162 4.162 6 C 0.283 3.717 7 O -0.431 6.431 8 N -0.340 5.340 9 C -0.021 4.021 10 C -0.164 4.164 11 C -0.155 4.155 12 C -0.165 4.165 13 C 0.058 3.942 14 H 0.068 0.932 15 C -0.119 4.119 16 H 0.098 0.902 17 C -0.110 4.110 18 C -0.155 4.155 19 C 0.018 3.982 20 N -0.331 5.331 21 C -0.402 4.402 22 H 0.068 0.932 23 C -0.237 4.237 24 N -0.572 5.572 25 Si 0.793 3.207 26 H -0.195 1.195 27 H -0.213 1.213 28 H -0.211 1.211 29 C 0.069 3.931 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.055 0.945 48 H 0.085 0.915 49 H 0.058 0.942 50 H 0.085 0.915 51 H 0.062 0.938 52 H 0.028 0.972 53 H 0.060 0.940 54 H 0.045 0.955 55 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -24.859 11.438 2.091 27.444 hybrid contribution 1.282 -0.512 -0.731 1.562 sum -23.577 10.925 1.359 26.021 Atomic orbital electron populations 1.22909 0.79411 1.03574 1.01085 1.87871 1.21627 1.29520 1.95667 1.22590 0.92480 0.84276 1.01791 1.21142 0.93708 0.96533 1.02519 1.21589 0.89352 0.98582 1.06723 1.21275 0.90771 0.83723 0.75943 1.90816 1.74063 1.28860 1.49389 1.48222 1.05924 1.07419 1.72442 1.22080 0.99767 0.80964 0.99297 1.21895 0.94669 1.01173 0.98697 1.21531 0.96895 0.94734 1.02325 1.21973 1.00206 0.96325 0.98041 1.21001 0.80239 0.95478 0.97520 0.93170 1.22166 0.95261 0.94947 0.99543 0.90179 1.21455 0.99748 0.94760 0.95062 1.21772 0.95875 0.97905 0.99937 1.21029 0.93013 0.96471 0.87649 1.44140 1.53934 1.13860 1.21191 1.19374 1.05345 0.92207 1.23270 0.93158 1.25987 0.96837 0.98018 1.02860 1.70182 1.28690 1.16209 1.42108 0.85251 0.77993 0.78431 0.79037 1.19493 1.21265 1.21092 1.20560 0.91266 0.84825 0.96432 0.92792 0.92866 0.89280 0.91315 0.91437 0.93101 0.92836 0.86011 0.86126 0.86432 0.90761 0.87948 0.91416 0.91980 0.90889 0.91619 0.93041 0.94453 0.91472 0.94224 0.91508 0.93841 0.97242 0.93989 0.95477 0.98383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.43 -9.01 10.70 -148.98 -1.59 -10.60 16 3 C 0.06 1.01 5.94 71.98 0.43 1.43 16 4 C -0.10 -2.11 4.87 30.59 0.15 -1.96 16 5 C -0.12 -1.94 4.06 29.85 0.12 -1.82 16 6 C 0.49 13.21 6.22 87.66 0.54 13.76 16 7 O -0.55 -20.69 9.78 -3.05 -0.03 -20.72 16 8 N -0.61 -14.98 2.94 -795.03 -2.33 -17.31 16 9 C 0.10 1.41 6.35 86.36 0.55 1.96 16 10 C -0.13 -1.67 6.08 30.67 0.19 -1.48 16 11 C -0.12 -2.33 5.89 30.63 0.18 -2.15 16 12 C -0.13 -3.72 4.67 30.67 0.14 -3.58 16 13 C 0.16 5.37 2.66 44.98 0.12 5.49 16 14 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 15 C -0.10 -4.24 1.58 -10.71 -0.02 -4.25 16 16 H 0.08 3.99 5.65 -25.35 -0.14 3.85 16 17 C -0.07 -2.86 3.59 30.62 0.11 -2.75 16 18 C -0.12 -4.90 6.04 30.67 0.19 -4.71 16 19 C 0.14 7.06 6.52 86.36 0.56 7.62 16 20 N -0.61 -34.56 2.94 -699.12 -2.06 -36.61 16 21 C -0.27 -16.60 9.49 84.03 0.80 -15.80 16 22 H 0.05 3.08 7.87 -2.91 -0.02 3.06 16 23 C -0.04 -2.43 4.91 84.86 0.42 -2.01 16 24 N -0.93 -57.87 11.72 21.65 0.25 -57.61 16 25 Si 0.97 47.89 29.58 68.60 2.03 49.92 16 26 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 29 C 0.20 10.29 4.42 86.36 0.38 10.67 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 36 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 37 H 0.12 1.20 7.93 -2.38 -0.02 1.19 16 38 H 0.12 1.20 7.71 -2.39 -0.02 1.18 16 39 H 0.12 0.83 5.93 -2.39 -0.01 0.81 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.07 1.95 6.06 -2.39 -0.01 1.94 16 46 H 0.05 1.80 6.77 -2.39 -0.02 1.78 16 47 H 0.04 1.43 6.30 -2.39 -0.02 1.42 16 48 H 0.07 2.45 5.06 -2.39 -0.01 2.43 16 49 H 0.04 1.83 8.08 -2.38 -0.02 1.81 16 50 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 51 H 0.04 2.11 7.93 -2.38 -0.02 2.09 16 52 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 53 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 54 H 0.03 1.59 6.66 -2.39 -0.02 1.58 16 55 H 0.00 -0.10 6.52 -2.38 -0.02 -0.11 16 Total: -1.00 -79.43 402.09 3.09 -76.34 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.71 Total: 14.60 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.11 Total: 2.00 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -4.14 Total: -111.54 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.62 Total: -31.32 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -79.43 3.09 -76.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273598740.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.615 kcal (2) G-P(sol) polarization free energy of solvation -79.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds