Wall clock time and date at job start Tue Mar 31 2020 22:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99481 * 2 1 4 4 C 1.53000 * 109.47033 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47276 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47117 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00228 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00204 * 179.97438 * 6 5 4 9 9 C 1.46930 * 120.62655 * 353.76059 * 8 6 5 10 10 C 1.53631 * 108.54088 * 126.36735 * 9 8 6 11 11 C 1.53045 * 109.24181 * 54.85576 * 10 9 8 12 12 C 1.53046 * 109.53405 * 298.51157 * 11 10 9 13 13 C 1.46930 * 120.63440 * 174.03857 * 8 6 5 14 14 H 1.08998 * 109.58576 * 113.65676 * 13 8 6 15 15 C 1.53004 * 109.58366 * 353.37496 * 13 8 6 16 16 H 1.08999 * 109.49534 * 54.46870 * 15 13 8 17 17 C 1.53038 * 109.49527 * 174.53349 * 15 13 8 18 18 C 1.53043 * 109.53790 * 181.28491 * 17 15 13 19 19 C 1.53192 * 109.33679 * 298.68272 * 18 17 15 20 20 N 1.46928 * 108.77484 * 54.62416 * 19 18 17 21 21 C 1.36935 * 120.63311 * 126.41177 * 20 19 18 22 22 H 1.08007 * 119.99848 * 332.27089 * 21 20 19 23 23 C 1.38807 * 120.00254 * 152.26592 * 21 20 19 24 24 N 1.31618 * 119.99869 * 344.17775 * 23 21 20 25 25 Si 1.86804 * 120.00054 * 164.16911 * 23 21 20 26 26 H 1.48502 * 109.46861 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46895 * 120.00654 * 25 23 21 28 28 H 1.48501 * 109.47193 * 240.00566 * 25 23 21 29 29 C 1.46922 * 118.73463 * 306.38583 * 20 19 18 30 30 H 1.09000 * 109.46687 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47291 * 299.99274 * 1 2 3 32 32 H 1.08994 * 109.47296 * 60.00020 * 1 2 3 33 33 H 1.09002 * 109.47231 * 60.00724 * 3 2 1 34 34 H 1.08994 * 109.47744 * 300.00407 * 3 2 1 35 35 H 1.09000 * 109.47130 * 300.00286 * 4 3 2 36 36 H 1.08998 * 109.47298 * 60.00176 * 4 3 2 37 37 H 1.09000 * 109.46889 * 299.99961 * 5 4 3 38 38 H 1.08992 * 109.46953 * 60.00294 * 5 4 3 39 39 H 1.08998 * 109.58689 * 246.19967 * 9 8 6 40 40 H 1.08997 * 109.58793 * 6.62736 * 9 8 6 41 41 H 1.09005 * 109.63336 * 294.86767 * 10 9 8 42 42 H 1.08996 * 109.45325 * 174.73936 * 10 9 8 43 43 H 1.08992 * 109.45752 * 178.49079 * 11 10 9 44 44 H 1.08999 * 109.45611 * 58.52657 * 11 10 9 45 45 H 1.08996 * 109.49809 * 301.41076 * 12 11 10 46 46 H 1.09003 * 109.51845 * 181.33414 * 12 11 10 47 47 H 1.09000 * 109.45929 * 301.33833 * 17 15 13 48 48 H 1.08997 * 109.45990 * 61.29710 * 17 15 13 49 49 H 1.08998 * 109.49496 * 178.71618 * 18 17 15 50 50 H 1.09002 * 109.47207 * 58.63615 * 18 17 15 51 51 H 1.09000 * 109.58777 * 294.83025 * 19 18 17 52 52 H 1.09005 * 109.69989 * 174.47828 * 19 18 17 53 53 H 0.97001 * 119.99982 * 179.97438 * 24 23 21 54 54 H 1.09001 * 109.59020 * 293.82358 * 29 20 19 55 55 H 1.09006 * 109.58800 * 173.40331 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5826 0.0000 6 6 5.6599 2.4637 -0.0013 7 8 6.1816 1.3688 -0.0030 8 7 6.4238 3.5740 -0.0015 9 6 5.8125 4.9031 -0.1379 10 6 6.2868 5.7812 1.0301 11 6 7.8169 5.7938 1.0627 12 6 8.3357 4.3717 1.2879 13 6 7.8842 3.4781 0.1286 14 1 8.3560 3.8097 -0.7964 15 6 8.2794 2.0279 0.4148 16 1 7.8619 1.3785 -0.3547 17 6 9.8048 1.9048 0.4147 18 6 10.2007 0.4485 0.6691 19 6 9.6799 0.0138 2.0426 20 7 8.2334 0.2648 2.1010 21 6 7.3647 -0.7368 2.4436 22 1 7.6221 -1.7666 2.2441 23 6 6.1534 -0.4286 3.0473 24 7 5.9640 0.7636 3.5717 25 14 4.7920 -1.7059 3.1153 26 1 5.2532 -2.9563 2.4601 27 1 4.4481 -1.9878 4.5322 28 1 3.5927 -1.1893 2.4081 29 6 7.7368 1.6110 1.7853 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6886 1.8464 0.8901 34 1 1.6885 1.8465 -0.8899 35 1 3.8574 0.6437 0.8891 36 1 3.8567 0.6441 -0.8908 37 1 3.8356 3.1240 -0.8895 38 1 3.8364 3.1228 0.8904 39 1 6.1189 5.3510 -1.0832 40 1 4.7268 4.8106 -0.1099 41 1 5.9063 5.3788 1.9689 42 1 5.9175 6.7976 0.8935 43 1 8.1575 6.4374 1.8737 44 1 8.1971 6.1731 0.1141 45 1 7.9358 3.9826 2.2243 46 1 9.4246 4.3844 1.3348 47 1 10.1949 2.2241 -0.5517 48 1 10.2201 2.5360 1.2003 49 1 11.2867 0.3575 0.6463 50 1 9.7657 -0.1865 -0.1027 51 1 10.1821 0.5869 2.8220 52 1 9.8726 -1.0491 2.1891 53 1 5.1174 0.9791 3.9933 54 1 8.0805 2.3144 2.5437 55 1 6.6471 1.6018 1.7596 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273598741.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:36 Heat of formation + Delta-G solvation = -61.424304 kcal Electronic energy + Delta-G solvation = -33357.633962 eV Core-core repulsion = 29395.152719 eV Total energy + Delta-G solvation = -3962.481243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.84121 -39.14316 -38.65069 -38.12842 -35.28938 -34.61174 -33.59678 -33.29037 -31.63629 -29.66346 -28.89499 -27.15524 -26.89153 -25.64566 -24.71088 -23.78695 -23.17034 -22.04205 -21.65532 -20.35073 -19.56791 -18.58459 -17.78451 -17.33931 -17.30555 -16.73055 -16.51301 -16.31210 -15.87031 -15.66000 -15.51988 -15.24665 -15.11385 -14.99920 -14.71433 -14.46394 -14.19373 -13.96035 -13.90796 -13.85817 -13.31902 -13.11534 -12.95734 -12.81638 -12.78489 -12.60240 -12.59290 -12.30922 -12.16184 -12.02041 -11.98645 -11.86572 -11.83363 -11.61377 -11.54700 -11.49117 -11.29288 -10.93277 -10.79668 -10.64065 -10.27339 -9.57386 -9.21310 -8.49280 -7.75790 -5.17986 1.36990 1.47237 1.49110 1.92946 2.21699 2.53877 2.87399 3.38785 3.63417 3.85021 3.94522 3.97380 4.03769 4.08690 4.12503 4.21160 4.25265 4.29348 4.33655 4.37137 4.44022 4.45236 4.47450 4.51430 4.56339 4.58831 4.65272 4.71806 4.76917 4.79252 4.90233 4.91333 4.95877 5.01716 5.05780 5.09996 5.12921 5.18146 5.18764 5.28591 5.30747 5.34103 5.37618 5.47263 5.54943 5.62069 5.69582 5.81423 6.10301 6.22250 6.26029 6.59520 6.73047 7.29690 7.60200 8.04904 8.52291 9.28094 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008898 B = 0.005932 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.964448 B = 4719.319693 C = 6867.792096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.431 6.431 3 C 0.069 3.931 4 C -0.102 4.102 5 C -0.121 4.121 6 C 0.488 3.512 7 O -0.530 6.530 8 N -0.613 5.613 9 C 0.104 3.896 10 C -0.133 4.133 11 C -0.111 4.111 12 C -0.132 4.132 13 C 0.163 3.837 14 H 0.080 0.920 15 C -0.115 4.115 16 H 0.082 0.918 17 C -0.106 4.106 18 C -0.121 4.121 19 C 0.137 3.863 20 N -0.608 5.608 21 C -0.247 4.247 22 H 0.044 0.956 23 C -0.026 4.026 24 N -0.921 5.921 25 Si 0.938 3.062 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.284 1.284 29 C 0.191 3.809 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.028 0.972 36 H 0.058 0.942 37 H 0.130 0.870 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.042 0.958 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.039 0.961 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.052 0.948 49 H 0.079 0.921 50 H 0.041 0.959 51 H 0.008 0.992 52 H 0.041 0.959 53 H 0.243 0.757 54 H -0.031 1.031 55 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 15.185 -11.308 19.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.351 6.351 3 C -0.007 4.007 4 C -0.141 4.141 5 C -0.160 4.160 6 C 0.277 3.723 7 O -0.407 6.407 8 N -0.347 5.347 9 C -0.018 4.018 10 C -0.171 4.171 11 C -0.149 4.149 12 C -0.171 4.171 13 C 0.060 3.940 14 H 0.098 0.902 15 C -0.135 4.135 16 H 0.100 0.900 17 C -0.144 4.144 18 C -0.160 4.160 19 C 0.011 3.989 20 N -0.331 5.331 21 C -0.378 4.378 22 H 0.062 0.938 23 C -0.221 4.221 24 N -0.568 5.568 25 Si 0.768 3.232 26 H -0.207 1.207 27 H -0.219 1.219 28 H -0.210 1.210 29 C 0.067 3.933 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.148 0.852 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.061 0.939 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.058 0.942 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.097 0.903 50 H 0.060 0.940 51 H 0.026 0.974 52 H 0.060 0.940 53 H 0.052 0.948 54 H -0.013 1.013 55 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.523 14.469 -11.223 18.861 hybrid contribution -0.703 -1.088 0.871 1.561 sum -5.226 13.380 -10.352 17.706 Atomic orbital electron populations 1.22940 0.79235 1.03651 1.01235 1.87904 1.21953 1.29603 1.95656 1.22565 0.92286 0.84229 1.01640 1.21153 0.94101 0.97021 1.01783 1.21504 0.91083 0.97744 1.05700 1.21022 0.90419 0.84238 0.76610 1.90863 1.73560 1.28676 1.47616 1.48121 1.06615 1.06798 1.73196 1.22101 0.99252 0.81091 0.99340 1.21995 0.96104 1.00959 0.98064 1.21491 0.95755 0.94796 1.02828 1.22022 1.00853 0.96246 0.97939 1.21171 0.79846 0.95201 0.97826 0.90192 1.22312 0.94579 0.95270 1.01333 0.89992 1.21561 0.96055 0.95977 1.00806 1.21839 0.99888 0.97009 0.97235 1.21042 0.85123 0.97597 0.95088 1.44295 1.00700 1.09231 1.78858 1.19256 0.99158 0.88068 1.31309 0.93835 1.25277 1.00646 0.98060 0.98129 1.70161 1.23708 1.21735 1.41166 0.85678 0.81210 0.79771 0.76507 1.20728 1.21912 1.21023 1.21180 1.01214 0.82120 0.88816 0.89211 0.93360 0.91839 0.92650 0.89895 0.95295 0.92330 0.85214 0.88375 0.89017 0.88167 0.93863 0.87878 0.91372 0.89982 0.94213 0.90894 0.91157 0.92954 0.90269 0.94008 0.97389 0.94025 0.94809 1.01317 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.43 -14.38 10.70 -148.98 -1.59 -15.97 16 3 C 0.07 1.94 5.94 71.98 0.43 2.37 16 4 C -0.10 -3.68 4.87 30.60 0.15 -3.54 16 5 C -0.12 -3.47 4.06 29.85 0.12 -3.35 16 6 C 0.49 18.10 6.33 87.66 0.55 18.65 16 7 O -0.53 -25.59 9.78 -3.04 -0.03 -25.62 16 8 N -0.61 -18.47 2.93 -794.18 -2.33 -20.80 16 9 C 0.10 1.97 6.38 86.51 0.55 2.52 16 10 C -0.13 -2.52 6.10 30.82 0.19 -2.33 16 11 C -0.11 -2.28 5.88 30.62 0.18 -2.10 16 12 C -0.13 -3.93 4.67 30.67 0.14 -3.79 16 13 C 0.16 5.22 2.65 44.97 0.12 5.34 16 14 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 15 C -0.12 -4.80 1.58 -10.72 -0.02 -4.81 16 16 H 0.08 3.98 5.61 -28.03 -0.16 3.83 16 17 C -0.11 -3.83 4.92 30.62 0.15 -3.68 16 18 C -0.12 -4.70 6.08 30.67 0.19 -4.51 16 19 C 0.14 6.59 6.52 86.36 0.56 7.15 16 20 N -0.61 -34.58 3.00 -699.09 -2.10 -36.67 16 21 C -0.25 -15.41 9.59 84.03 0.81 -14.61 16 22 H 0.04 2.75 7.88 -2.91 -0.02 2.73 16 23 C -0.03 -1.57 4.95 84.86 0.42 -1.15 16 24 N -0.92 -57.33 11.09 21.65 0.24 -57.09 16 25 Si 0.94 50.61 29.58 68.60 2.03 52.64 16 26 H -0.28 -15.07 7.11 99.48 0.71 -14.36 16 27 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 28 H -0.28 -15.42 7.09 99.48 0.71 -14.71 16 29 C 0.19 9.95 3.30 86.36 0.28 10.24 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 36 H 0.06 2.23 8.10 -2.39 -0.02 2.22 16 37 H 0.13 2.44 7.69 -2.39 -0.02 2.42 16 38 H 0.10 2.64 7.94 -2.39 -0.02 2.62 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 1.51 5.93 -2.39 -0.01 1.49 16 41 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.04 1.54 5.92 -2.39 -0.01 1.53 16 46 H 0.07 2.04 6.92 -2.39 -0.02 2.03 16 47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.05 1.84 6.81 -2.39 -0.02 1.83 16 49 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 50 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 52 H 0.04 1.98 7.93 -2.38 -0.02 1.96 16 53 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 54 H -0.03 -1.74 5.93 -2.39 -0.01 -1.76 16 55 H 0.10 5.58 2.84 -2.38 -0.01 5.58 16 Total: -1.00 -82.47 401.24 3.00 -79.47 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.70 Total: 19.83 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 6.08 Total: 4.22 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -4.18 Total: -114.56 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.62 Total: -41.59 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.03 Total: 52.64 kcal Total: -82.47 3.00 -79.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273598741.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.049 kcal (2) G-P(sol) polarization free energy of solvation -82.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds