Wall clock time and date at job start Tue Mar 31 2020 22:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99735 * 2 1 4 4 C 1.53004 * 109.47012 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47178 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47027 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00156 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00057 * 179.97438 * 6 5 4 9 9 C 1.46930 * 120.62621 * 5.99998 * 8 6 5 10 10 C 1.53193 * 108.76890 * 233.58376 * 9 8 6 11 11 C 1.53036 * 109.31573 * 305.36232 * 10 9 8 12 12 C 1.53073 * 109.65658 * 61.30484 * 11 10 9 13 13 C 1.46917 * 120.63113 * 185.97351 * 8 6 5 14 14 H 1.09002 * 109.58483 * 246.34681 * 13 8 6 15 15 C 1.52997 * 109.58939 * 6.62859 * 13 8 6 16 16 H 1.09006 * 109.49750 * 306.36735 * 15 13 8 17 17 C 1.53039 * 109.49957 * 186.30160 * 15 13 8 18 18 C 1.53045 * 109.53873 * 178.68286 * 17 15 13 19 19 C 1.53184 * 109.31145 * 61.36569 * 18 17 15 20 20 N 1.46925 * 108.77549 * 305.36094 * 19 18 17 21 21 C 1.36935 * 120.63570 * 233.33589 * 20 19 18 22 22 H 1.07997 * 120.00160 * 149.65366 * 21 20 19 23 23 C 1.38818 * 119.99854 * 329.65493 * 21 20 19 24 24 N 1.31616 * 119.99939 * 166.32013 * 23 21 20 25 25 Si 1.86804 * 119.99974 * 346.32429 * 23 21 20 26 26 H 1.48493 * 109.47264 * 90.55058 * 25 23 21 27 27 H 1.48499 * 109.47118 * 210.55635 * 25 23 21 28 28 H 1.48502 * 109.46722 * 330.55027 * 25 23 21 29 29 C 1.46934 * 118.73822 * 53.61476 * 20 19 18 30 30 H 1.09001 * 109.46958 * 300.00116 * 1 2 3 31 31 H 1.08996 * 109.47184 * 59.99799 * 1 2 3 32 32 H 1.08999 * 109.47059 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47243 * 60.00190 * 3 2 1 34 34 H 1.09003 * 109.47172 * 299.99789 * 3 2 1 35 35 H 1.08999 * 109.47157 * 59.99898 * 4 3 2 36 36 H 1.08994 * 109.46984 * 299.99935 * 4 3 2 37 37 H 1.08999 * 109.47211 * 59.99868 * 5 4 3 38 38 H 1.09003 * 109.47038 * 299.99569 * 5 4 3 39 39 H 1.09000 * 109.58506 * 353.36965 * 9 8 6 40 40 H 1.09001 * 109.58598 * 113.65738 * 9 8 6 41 41 H 1.08993 * 109.50109 * 65.32122 * 10 9 8 42 42 H 1.09002 * 109.49296 * 185.41744 * 10 9 8 43 43 H 1.08995 * 109.46222 * 181.38765 * 11 10 9 44 44 H 1.09004 * 109.46163 * 301.36454 * 11 10 9 45 45 H 1.09000 * 109.62306 * 178.82998 * 12 11 10 46 46 H 1.08999 * 109.39490 * 58.72226 * 12 11 10 47 47 H 1.09002 * 109.45984 * 58.66240 * 17 15 13 48 48 H 1.08996 * 109.44967 * 298.69765 * 17 15 13 49 49 H 1.08998 * 109.49331 * 301.41355 * 18 17 15 50 50 H 1.08997 * 109.49383 * 181.31780 * 18 17 15 51 51 H 1.09003 * 109.58775 * 185.58043 * 19 18 17 52 52 H 1.08999 * 109.59127 * 65.15341 * 19 18 17 53 53 H 0.97006 * 119.99946 * 180.02562 * 24 23 21 54 54 H 1.08998 * 109.58310 * 66.17360 * 29 20 19 55 55 H 1.08996 * 109.58877 * 186.60269 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 0.0000 6 6 5.6600 2.4635 0.0000 7 8 6.1816 1.3686 0.0000 8 7 6.4240 3.5739 0.0000 9 6 5.8124 4.9032 0.1322 10 6 6.2861 5.7815 -1.0302 11 6 7.8160 5.7941 -1.0643 12 6 8.3378 4.3728 -1.2893 13 6 7.8841 3.4779 -0.1316 14 1 8.3568 3.8089 0.7931 15 6 8.2790 2.0279 -0.4189 16 1 7.8499 1.3763 0.3423 17 6 9.8040 1.9005 -0.3998 18 6 10.1991 0.4440 -0.6546 19 6 9.6955 0.0169 -2.0368 20 7 8.2507 0.2724 -2.1134 21 6 7.3843 -0.7238 -2.4771 22 1 6.3764 -0.7311 -2.0892 23 6 7.8015 -1.7242 -3.3443 24 7 7.0799 -2.8158 -3.4856 25 14 9.3872 -1.5212 -4.3107 26 1 10.5179 -2.0853 -3.5307 27 1 9.2727 -2.2383 -5.6060 28 1 9.6314 -0.0784 -4.5636 29 6 7.7536 1.6187 -1.7984 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6440 -0.8908 36 1 3.8574 0.6437 0.8891 37 1 3.8364 3.1228 0.8904 38 1 3.8358 3.1239 -0.8896 39 1 4.7267 4.8106 0.1014 40 1 6.1142 5.3519 1.0786 41 1 5.9045 5.3798 -1.9688 42 1 5.9169 6.7978 -0.8921 43 1 8.1558 6.4381 -1.8753 44 1 8.1973 6.1727 -0.1159 45 1 9.4268 4.3854 -1.3342 46 1 7.9390 3.9849 -2.2266 47 1 10.1825 2.2146 0.5729 48 1 10.2309 2.5339 -1.1774 49 1 9.7519 -0.1930 0.1084 50 1 11.2844 0.3498 -0.6177 51 1 9.8868 -1.0462 -2.1830 52 1 10.2096 0.5920 -2.8069 53 1 7.3717 -3.5151 -4.0913 54 1 8.1094 2.3244 -2.5491 55 1 6.6637 1.6125 -1.7872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273598742.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:41 Heat of formation + Delta-G solvation = -61.708345 kcal Electronic energy + Delta-G solvation = -32575.605478 eV Core-core repulsion = 28613.111918 eV Total energy + Delta-G solvation = -3962.493560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.97330 -39.26353 -38.79004 -38.23983 -35.49252 -34.58474 -33.63819 -33.29911 -32.48057 -29.90949 -28.90809 -27.21220 -26.88901 -25.73705 -24.88296 -23.66083 -23.39843 -22.33124 -21.70954 -20.49210 -19.59179 -18.72868 -17.81728 -17.40551 -17.30843 -17.13910 -16.65210 -16.38601 -16.03686 -15.78568 -15.50842 -15.38462 -15.14589 -14.97327 -14.75119 -14.63321 -14.53338 -14.31898 -14.01531 -13.84037 -13.44120 -13.29950 -13.12991 -12.90378 -12.85447 -12.72282 -12.57581 -12.31034 -12.19782 -11.97766 -11.95720 -11.90387 -11.75509 -11.69632 -11.55324 -11.42275 -11.36767 -11.18131 -10.95255 -10.63181 -10.59995 -9.68008 -9.34579 -8.73680 -8.11413 -5.46226 1.25244 1.35107 1.46121 1.82217 2.11942 2.41762 2.89955 3.12397 3.38957 3.63818 3.88608 3.94162 3.98630 4.03125 4.11590 4.14649 4.14919 4.22649 4.23484 4.36400 4.40463 4.47376 4.47641 4.48587 4.53917 4.58004 4.58780 4.63127 4.68095 4.72050 4.78877 4.84015 4.85046 4.92333 4.99766 5.02777 5.07956 5.09522 5.13202 5.18136 5.27535 5.29697 5.31814 5.35399 5.35763 5.43544 5.58220 5.68852 5.96023 6.01861 6.20165 6.30572 6.63841 6.99890 7.48862 7.70840 8.11538 9.10122 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007573 B = 0.005274 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3696.511553 B = 5308.048289 C = 8217.830318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.432 6.432 3 C 0.068 3.932 4 C -0.102 4.102 5 C -0.122 4.122 6 C 0.488 3.512 7 O -0.545 6.545 8 N -0.610 5.610 9 C 0.103 3.897 10 C -0.133 4.133 11 C -0.114 4.114 12 C -0.135 4.135 13 C 0.162 3.838 14 H 0.084 0.916 15 C -0.108 4.108 16 H 0.088 0.912 17 C -0.104 4.104 18 C -0.127 4.127 19 C 0.114 3.886 20 N -0.616 5.616 21 C -0.225 4.225 22 H 0.034 0.966 23 C -0.049 4.049 24 N -0.971 5.971 25 Si 0.963 3.037 26 H -0.276 1.276 27 H -0.311 1.311 28 H -0.260 1.260 29 C 0.172 3.828 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.051 0.949 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.049 0.951 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.040 0.960 50 H 0.081 0.919 51 H 0.042 0.958 52 H 0.032 0.968 53 H 0.259 0.741 54 H 0.012 0.988 55 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 25.055 10.586 27.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.352 6.352 3 C -0.008 4.008 4 C -0.141 4.141 5 C -0.161 4.161 6 C 0.277 3.723 7 O -0.423 6.423 8 N -0.345 5.345 9 C -0.019 4.019 10 C -0.171 4.171 11 C -0.151 4.151 12 C -0.173 4.173 13 C 0.058 3.942 14 H 0.101 0.899 15 C -0.128 4.128 16 H 0.105 0.895 17 C -0.141 4.141 18 C -0.166 4.166 19 C -0.010 4.010 20 N -0.340 5.340 21 C -0.355 4.355 22 H 0.052 0.948 23 C -0.241 4.241 24 N -0.619 5.619 25 Si 0.793 3.207 26 H -0.203 1.203 27 H -0.240 1.240 28 H -0.184 1.184 29 C 0.048 3.952 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.148 0.852 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.067 0.933 47 H 0.096 0.904 48 H 0.084 0.916 49 H 0.059 0.941 50 H 0.099 0.901 51 H 0.060 0.940 52 H 0.050 0.950 53 H 0.067 0.933 54 H 0.029 0.971 55 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.038 24.209 10.518 26.872 hybrid contribution 0.342 -1.021 -0.915 1.413 sum -4.696 23.188 9.603 25.533 Atomic orbital electron populations 1.22923 0.79253 1.03566 1.01232 1.87916 1.21899 1.29721 1.95666 1.22583 0.92153 0.84226 1.01863 1.21139 0.94229 0.96994 1.01696 1.21553 0.90349 0.97709 1.06502 1.21206 0.90724 0.84056 0.76317 1.90895 1.73763 1.29016 1.48596 1.48185 1.06601 1.06888 1.72786 1.22046 0.99471 0.80814 0.99543 1.21925 0.95989 1.00973 0.98239 1.21504 0.95809 0.94904 1.02885 1.22091 1.01426 0.96076 0.97749 1.21201 0.79879 0.94504 0.98601 0.89866 1.22165 0.94960 0.95968 0.99671 0.89469 1.21554 0.95582 0.95183 1.01827 1.21887 1.00272 0.97824 0.96579 1.21476 0.84775 0.98034 0.96740 1.44394 1.01812 1.08096 1.79706 1.18768 0.94912 1.02443 1.19367 0.94829 1.26059 1.01864 0.96571 0.99639 1.69963 1.42346 1.08292 1.41257 0.85697 0.79879 0.78076 0.77070 1.20324 1.24039 1.18420 1.21304 0.97310 0.83318 0.93258 0.92143 0.92984 0.89476 0.90347 0.91830 0.95032 0.92995 0.85235 0.86979 0.87732 0.89429 0.92934 0.88065 0.91130 0.90418 0.90311 0.93262 0.90443 0.91631 0.94124 0.90057 0.94027 0.94988 0.93253 0.97057 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.76 16 2 O -0.43 -13.01 10.70 -148.98 -1.59 -14.61 16 3 C 0.07 1.59 5.94 71.98 0.43 2.02 16 4 C -0.10 -3.12 4.87 30.60 0.15 -2.97 16 5 C -0.12 -2.65 4.06 29.85 0.12 -2.53 16 6 C 0.49 14.82 6.36 87.66 0.56 15.37 16 7 O -0.54 -23.52 9.82 -3.03 -0.03 -23.55 16 8 N -0.61 -14.16 2.94 -795.03 -2.34 -16.50 16 9 C 0.10 1.29 6.35 86.36 0.55 1.84 16 10 C -0.13 -1.58 6.08 30.67 0.19 -1.39 16 11 C -0.11 -1.58 5.88 30.63 0.18 -1.40 16 12 C -0.14 -2.93 4.68 30.68 0.14 -2.79 16 13 C 0.16 4.09 2.64 44.98 0.12 4.21 16 14 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 15 C -0.11 -3.88 1.58 -10.72 -0.02 -3.90 16 16 H 0.09 3.85 5.54 -34.00 -0.19 3.66 16 17 C -0.10 -3.29 4.93 30.62 0.15 -3.14 16 18 C -0.13 -4.85 6.08 30.67 0.19 -4.66 16 19 C 0.11 5.47 4.14 86.36 0.36 5.83 16 20 N -0.62 -33.33 2.76 -699.10 -1.93 -35.26 16 21 C -0.22 -14.59 10.07 84.04 0.85 -13.75 16 22 H 0.03 2.49 8.06 -2.91 -0.02 2.47 16 23 C -0.05 -3.17 5.34 84.86 0.45 -2.72 16 24 N -0.97 -67.42 13.97 21.65 0.30 -67.12 16 25 Si 0.96 51.79 24.25 68.60 1.66 53.45 16 26 H -0.28 -14.04 6.60 99.48 0.66 -13.39 16 27 H -0.31 -16.71 7.11 99.48 0.71 -16.01 16 28 H -0.26 -13.25 6.28 99.48 0.62 -12.63 16 29 C 0.17 7.75 4.51 86.36 0.39 8.14 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.03 1.28 8.10 -2.39 -0.02 1.26 16 36 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 37 H 0.13 1.71 7.70 -2.39 -0.02 1.69 16 38 H 0.11 1.95 7.93 -2.39 -0.02 1.93 16 39 H 0.10 0.87 5.93 -2.39 -0.01 0.86 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 1.61 6.95 -2.39 -0.02 1.59 16 46 H 0.05 1.36 5.91 -2.39 -0.01 1.34 16 47 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.07 1.90 6.83 -2.39 -0.02 1.89 16 49 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 51 H 0.04 2.19 4.39 -2.39 -0.01 2.18 16 52 H 0.03 1.47 6.78 -2.39 -0.02 1.45 16 53 H 0.26 16.95 8.31 -92.70 -0.77 16.18 16 54 H 0.01 0.51 5.92 -2.39 -0.01 0.50 16 55 H 0.05 2.35 4.90 -2.39 -0.01 2.34 16 Total: -1.00 -89.39 394.28 2.66 -86.73 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.54 Total: 16.95 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 6.05 Total: -0.08 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -3.97 Total: -118.88 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.62 Total: -38.16 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 1.66 Total: 53.45 kcal Total: -89.39 2.66 -86.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273598742.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.017 kcal (2) G-P(sol) polarization free energy of solvation -89.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds