Wall clock time and date at job start Tue Mar 31 2020 22:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00282 * 2 1 4 4 C 1.52997 * 109.47513 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47386 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47327 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99757 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00231 * 179.97438 * 6 5 4 9 9 C 1.46922 * 120.63076 * 356.29337 * 8 6 5 10 10 C 1.52767 * 109.01108 * 233.58654 * 9 8 6 11 11 C 1.53040 * 109.37725 * 305.58687 * 10 9 8 12 12 C 1.53038 * 109.54262 * 61.24253 * 11 10 9 13 13 C 1.46922 * 120.63155 * 176.57629 * 8 6 5 14 14 H 1.09002 * 109.58761 * 246.15337 * 13 8 6 15 15 C 1.53001 * 109.58953 * 6.57928 * 13 8 6 16 16 H 1.09005 * 109.49714 * 308.77099 * 15 13 8 17 17 C 1.53043 * 109.49697 * 68.83012 * 15 13 8 18 18 C 1.53035 * 109.53892 * 181.31750 * 17 15 13 19 19 C 1.53185 * 109.31431 * 298.63842 * 18 17 15 20 20 N 1.46928 * 108.77762 * 54.63257 * 19 18 17 21 21 C 1.36941 * 120.63236 * 126.41175 * 20 19 18 22 22 H 1.08001 * 120.00117 * 330.38097 * 21 20 19 23 23 C 1.38810 * 120.00172 * 150.37562 * 21 20 19 24 24 N 1.31619 * 120.00066 * 168.95387 * 23 21 20 25 25 Si 1.86803 * 119.99762 * 348.95083 * 23 21 20 26 26 H 1.48507 * 109.46849 * 92.60217 * 25 23 21 27 27 H 1.48498 * 109.47200 * 212.59933 * 25 23 21 28 28 H 1.48494 * 109.47349 * 332.60363 * 25 23 21 29 29 C 1.46925 * 118.74163 * 306.39308 * 20 19 18 30 30 H 1.08997 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46805 * 300.00053 * 1 2 3 32 32 H 1.09005 * 109.46817 * 59.99716 * 1 2 3 33 33 H 1.09006 * 109.47509 * 300.00407 * 3 2 1 34 34 H 1.09004 * 109.47227 * 59.99976 * 3 2 1 35 35 H 1.09005 * 109.46746 * 300.00090 * 4 3 2 36 36 H 1.09004 * 109.47015 * 59.99697 * 4 3 2 37 37 H 1.08996 * 109.47593 * 300.00286 * 5 4 3 38 38 H 1.09008 * 109.47023 * 60.00299 * 5 4 3 39 39 H 1.09001 * 109.58696 * 353.41505 * 9 8 6 40 40 H 1.09003 * 109.58957 * 113.84128 * 9 8 6 41 41 H 1.09005 * 109.56467 * 185.55474 * 10 9 8 42 42 H 1.08990 * 109.36100 * 65.49324 * 10 9 8 43 43 H 1.09003 * 109.46378 * 301.21619 * 11 10 9 44 44 H 1.09007 * 109.44478 * 181.25735 * 11 10 9 45 45 H 1.08997 * 109.50097 * 178.67860 * 12 11 10 46 46 H 1.08998 * 109.49876 * 58.57969 * 12 11 10 47 47 H 1.09001 * 109.45616 * 301.34198 * 17 15 13 48 48 H 1.09003 * 109.45484 * 61.31075 * 17 15 13 49 49 H 1.09004 * 109.49559 * 58.59002 * 18 17 15 50 50 H 1.08999 * 109.50077 * 178.68539 * 18 17 15 51 51 H 1.09006 * 109.58763 * 174.42075 * 19 18 17 52 52 H 1.09007 * 109.58974 * 294.70172 * 19 18 17 53 53 H 0.97005 * 119.99926 * 179.97438 * 24 23 21 54 54 H 1.08995 * 109.58515 * 293.82463 * 29 20 19 55 55 H 1.08993 * 109.59206 * 173.39336 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 5.6601 2.4633 -0.0013 7 8 6.1817 1.3684 -0.0013 8 7 6.4241 3.5736 -0.0023 9 6 5.8091 4.9054 -0.0852 10 6 6.4399 5.6735 -1.2453 11 6 7.9606 5.6926 -1.0744 12 6 8.4960 4.2590 -1.0942 13 6 7.8880 3.4751 0.0731 14 1 8.2346 3.8972 1.0165 15 6 8.3089 2.0071 -0.0205 16 1 7.7459 1.4202 0.7054 17 6 8.0256 1.4834 -1.4304 18 6 8.4157 0.0061 -1.5157 19 6 9.9152 -0.1388 -1.2383 20 7 10.2205 0.4924 0.0529 21 6 10.8781 -0.2039 1.0317 22 1 10.7673 -1.2761 1.0990 23 6 11.6872 0.4684 1.9374 24 7 12.1437 -0.1565 3.0021 25 14 12.1283 2.2599 1.6450 26 1 11.1462 3.1311 2.3393 27 1 13.4892 2.5276 2.1754 28 1 12.0998 2.5453 0.1880 29 6 9.8073 1.8849 0.2739 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8465 -0.8900 34 1 1.6887 1.8464 0.8900 35 1 3.8574 0.6435 0.8892 36 1 3.8568 0.6438 -0.8909 37 1 3.8358 3.1231 -0.8912 38 1 3.8366 3.1235 0.8888 39 1 4.7375 4.8030 -0.2565 40 1 5.9825 5.4465 0.8450 41 1 6.0620 6.6959 -1.2545 42 1 6.1855 5.1826 -2.1845 43 1 8.2134 6.1615 -0.1234 44 1 8.4103 6.2595 -1.8897 45 1 9.5814 4.2746 -0.9960 46 1 8.2222 3.7814 -2.0349 47 1 6.9638 1.5921 -1.6515 48 1 8.6075 2.0548 -2.1536 49 1 7.8522 -0.5622 -0.7756 50 1 8.1920 -0.3723 -2.5131 51 1 10.1793 -1.1957 -1.1999 52 1 10.4823 0.3510 -2.0300 53 1 12.7094 0.3133 3.6348 54 1 10.3654 2.5418 -0.3932 55 1 10.0000 2.1633 1.3098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273598743.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:45 Heat of formation + Delta-G solvation = -58.733166 kcal Electronic energy + Delta-G solvation = -32317.061680 eV Core-core repulsion = 28354.697133 eV Total energy + Delta-G solvation = -3962.364547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.05547 -39.31772 -38.79338 -38.26521 -35.50473 -34.49258 -33.70156 -33.50986 -32.46916 -30.02578 -28.91385 -27.15319 -26.90633 -25.69060 -24.90718 -24.23567 -23.16735 -22.02372 -21.83819 -20.61496 -19.62149 -18.76004 -18.07235 -17.41469 -17.31305 -16.96041 -16.62679 -16.55685 -15.94073 -15.80252 -15.65983 -15.41946 -15.21931 -15.01541 -14.84328 -14.60906 -14.54334 -14.26867 -14.03748 -13.91505 -13.57164 -13.25852 -13.20680 -12.96669 -12.85254 -12.60568 -12.58794 -12.33183 -12.28686 -12.02648 -11.95364 -11.89904 -11.82827 -11.59362 -11.54463 -11.53348 -11.25369 -11.15042 -11.01337 -10.65569 -10.58091 -9.81168 -9.36796 -8.82020 -8.17432 -5.54851 1.23485 1.35116 1.45459 1.78212 2.03338 2.38491 2.88778 3.08287 3.30432 3.62404 3.83312 3.87049 3.96082 4.01698 4.08003 4.17205 4.22335 4.22678 4.28644 4.35220 4.35753 4.43462 4.49811 4.52760 4.55241 4.57505 4.60508 4.60514 4.64519 4.69666 4.74120 4.77886 4.87346 4.90432 4.95128 4.97332 5.04051 5.13665 5.13872 5.16069 5.18851 5.25605 5.30517 5.35293 5.44065 5.49046 5.54255 5.59173 5.85268 5.92561 6.10717 6.29858 6.61627 6.90651 7.41028 7.60473 8.02717 9.03061 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.003770 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.618242 B = 7426.148717 C = 8870.354995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.064 3.936 4 C -0.101 4.101 5 C -0.122 4.122 6 C 0.489 3.511 7 O -0.548 6.548 8 N -0.605 5.605 9 C 0.100 3.900 10 C -0.127 4.127 11 C -0.119 4.119 12 C -0.134 4.134 13 C 0.154 3.846 14 H 0.055 0.945 15 C -0.094 4.094 16 H 0.080 0.920 17 C -0.072 4.072 18 C -0.119 4.119 19 C 0.146 3.854 20 N -0.621 5.621 21 C -0.246 4.246 22 H 0.043 0.957 23 C -0.045 4.045 24 N -0.968 5.968 25 Si 0.963 3.037 26 H -0.278 1.278 27 H -0.311 1.311 28 H -0.249 1.249 29 C 0.124 3.876 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.048 0.952 49 H 0.034 0.966 50 H 0.072 0.928 51 H 0.045 0.955 52 H 0.035 0.965 53 H 0.261 0.739 54 H 0.036 0.964 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.727 17.674 -11.733 32.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.012 4.012 4 C -0.139 4.139 5 C -0.162 4.162 6 C 0.279 3.721 7 O -0.427 6.427 8 N -0.339 5.339 9 C -0.021 4.021 10 C -0.165 4.165 11 C -0.156 4.156 12 C -0.172 4.172 13 C 0.049 3.951 14 H 0.073 0.927 15 C -0.114 4.114 16 H 0.098 0.902 17 C -0.109 4.109 18 C -0.158 4.158 19 C 0.021 3.979 20 N -0.345 5.345 21 C -0.376 4.376 22 H 0.060 0.940 23 C -0.238 4.238 24 N -0.615 5.615 25 Si 0.792 3.208 26 H -0.205 1.205 27 H -0.241 1.241 28 H -0.173 1.173 29 C -0.001 4.001 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.067 0.933 49 H 0.053 0.947 50 H 0.091 0.909 51 H 0.063 0.937 52 H 0.053 0.947 53 H 0.070 0.930 54 H 0.053 0.947 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -24.269 16.930 -11.626 31.793 hybrid contribution 0.859 0.073 0.763 1.151 sum -23.410 17.004 -10.863 30.906 Atomic orbital electron populations 1.22910 0.79395 1.03578 1.01092 1.87873 1.21647 1.29547 1.95666 1.22595 0.92521 0.84273 1.01777 1.21146 0.93710 0.96616 1.02469 1.21573 0.89445 0.98459 1.06677 1.21272 0.90763 0.83776 0.76302 1.90840 1.73938 1.28913 1.49040 1.48169 1.05475 1.07324 1.72925 1.21994 0.99212 0.81244 0.99672 1.21823 0.94595 1.01745 0.98373 1.21542 0.96784 0.94666 1.02622 1.22081 0.99861 0.96926 0.98330 1.21130 0.80392 0.95373 0.98164 0.92748 1.22115 0.94183 0.94867 1.00273 0.90194 1.21485 1.00518 0.94369 0.94527 1.21794 0.95829 0.98014 1.00156 1.21084 0.94675 0.96248 0.85864 1.44385 1.66280 1.10981 1.12883 1.18883 1.19932 0.91973 1.06840 0.93959 1.26063 0.97761 1.03023 0.96964 1.69923 1.39262 1.38966 1.13353 0.85727 0.75285 0.80469 0.79285 1.20528 1.24079 1.17266 1.21635 0.95338 0.85665 0.97426 0.89299 0.92962 0.92664 0.91097 0.91673 0.93462 0.92575 0.85691 0.86521 0.86596 0.90723 0.87996 0.91449 0.91863 0.90550 0.92328 0.90832 0.90945 0.93341 0.94660 0.90912 0.93661 0.94667 0.92987 0.94672 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.43 -9.05 10.70 -148.98 -1.59 -10.65 16 3 C 0.06 0.99 5.94 71.98 0.43 1.42 16 4 C -0.10 -2.08 4.87 30.59 0.15 -1.93 16 5 C -0.12 -1.81 4.08 29.85 0.12 -1.69 16 6 C 0.49 12.28 6.68 87.66 0.59 12.86 16 7 O -0.55 -19.52 9.22 -3.04 -0.03 -19.55 16 8 N -0.61 -13.48 2.95 -795.84 -2.35 -15.83 16 9 C 0.10 1.19 6.31 86.22 0.54 1.74 16 10 C -0.13 -1.35 6.07 30.53 0.19 -1.17 16 11 C -0.12 -1.90 5.88 30.62 0.18 -1.72 16 12 C -0.13 -3.24 4.64 30.67 0.14 -3.10 16 13 C 0.15 4.53 2.64 44.98 0.12 4.65 16 14 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 15 C -0.09 -3.68 1.58 -10.71 -0.02 -3.70 16 16 H 0.08 3.77 5.65 -27.80 -0.16 3.62 16 17 C -0.07 -2.54 3.46 30.62 0.11 -2.43 16 18 C -0.12 -4.66 6.02 30.67 0.18 -4.48 16 19 C 0.15 6.55 6.52 86.36 0.56 7.11 16 20 N -0.62 -32.91 2.79 -699.10 -1.95 -34.87 16 21 C -0.25 -15.50 10.10 84.03 0.85 -14.65 16 22 H 0.04 2.93 8.06 -2.91 -0.02 2.91 16 23 C -0.04 -2.83 5.39 84.86 0.46 -2.37 16 24 N -0.97 -65.20 13.97 21.65 0.30 -64.90 16 25 Si 0.96 49.98 24.26 68.60 1.66 51.64 16 26 H -0.28 -13.67 6.72 99.48 0.67 -13.00 16 27 H -0.31 -16.19 7.11 99.48 0.71 -15.48 16 28 H -0.25 -12.05 5.82 99.48 0.58 -11.47 16 29 C 0.12 5.79 3.29 86.36 0.28 6.08 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.52 8.14 -2.38 -0.02 0.51 16 33 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 1.27 8.10 -2.38 -0.02 1.25 16 36 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 37 H 0.13 1.01 7.53 -2.39 -0.02 0.99 16 38 H 0.12 1.17 8.08 -2.38 -0.02 1.15 16 39 H 0.12 0.63 5.95 -2.39 -0.01 0.62 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.06 1.60 6.89 -2.39 -0.02 1.59 16 46 H 0.07 1.79 6.02 -2.39 -0.01 1.77 16 47 H 0.07 2.44 5.30 -2.39 -0.01 2.42 16 48 H 0.05 1.58 6.29 -2.39 -0.01 1.57 16 49 H 0.03 1.58 8.01 -2.38 -0.02 1.56 16 50 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 51 H 0.04 2.09 7.93 -2.38 -0.02 2.07 16 52 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 53 H 0.26 16.60 8.31 -92.70 -0.77 15.83 16 54 H 0.04 1.57 5.15 -2.39 -0.01 1.56 16 55 H 0.04 1.87 4.14 -2.39 -0.01 1.86 16 Total: -1.00 -83.29 393.34 2.71 -80.58 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.54 Total: 15.37 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 6.13 Total: -1.80 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -4.00 Total: -115.59 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.62 Total: -30.20 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.66 Total: 51.64 kcal Total: -83.29 2.71 -80.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273598743.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.845 kcal (2) G-P(sol) polarization free energy of solvation -83.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds