Wall clock time and date at job start Tue Mar 31 2020 22:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42909 * 113.99558 * 2 1 4 4 C 1.53003 * 109.46915 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.46844 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47172 * 180.02562 * 5 4 3 7 7 C 1.45780 * 117.95455 * 270.02032 * 6 5 4 8 8 C 1.52779 * 110.50027 * 161.05357 * 7 6 5 9 9 C 1.53220 * 108.90506 * 50.51902 * 8 7 6 10 10 C 1.53083 * 108.45583 * 292.68750 * 9 8 7 11 11 C 1.33349 * 117.96017 * 89.99872 * 6 5 4 12 12 O 1.21289 * 118.22313 * 2.34212 * 11 6 5 13 13 C 1.52986 * 109.75594 * 290.65594 * 8 7 6 14 14 C 1.53057 * 109.28167 * 182.03281 * 13 8 7 15 15 N 1.46846 * 109.50864 * 59.01079 * 14 13 8 16 16 C 1.46896 * 111.00009 * 174.09481 * 15 14 13 17 17 C 1.52996 * 109.47256 * 170.00096 * 16 15 14 18 18 C 1.50702 * 109.47159 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 C 1.46842 * 111.24231 * 298.22758 * 15 14 13 27 27 C 1.52987 * 109.77620 * 170.38952 * 8 7 6 28 28 H 1.09001 * 109.47588 * 300.00218 * 1 2 3 29 29 H 1.08995 * 109.47178 * 60.00399 * 1 2 3 30 30 H 1.09001 * 109.46738 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46925 * 59.99618 * 3 2 1 32 32 H 1.09005 * 109.46830 * 299.99888 * 3 2 1 33 33 H 1.08998 * 109.46963 * 59.99705 * 4 3 2 34 34 H 1.08998 * 109.46920 * 299.99684 * 4 3 2 35 35 H 1.08998 * 109.47414 * 60.00187 * 5 4 3 36 36 H 1.08998 * 109.47272 * 299.99675 * 5 4 3 37 37 H 1.09005 * 109.27303 * 40.79510 * 7 6 5 38 38 H 1.09002 * 109.27297 * 281.32190 * 7 6 5 39 39 H 1.08997 * 109.64364 * 52.38534 * 9 8 7 40 40 H 1.09010 * 109.63838 * 173.00260 * 9 8 7 41 41 H 1.08995 * 109.40123 * 168.90899 * 10 9 8 42 42 H 1.08995 * 109.40235 * 288.74111 * 10 9 8 43 43 H 1.09001 * 109.50507 * 62.08693 * 13 8 7 44 44 H 1.09001 * 109.53540 * 301.99666 * 13 8 7 45 45 H 1.09003 * 109.46187 * 299.00619 * 14 13 8 46 46 H 1.08997 * 109.46208 * 179.02157 * 14 13 8 47 47 H 1.09004 * 109.46774 * 50.00295 * 16 15 14 48 48 H 1.09000 * 109.47723 * 290.00683 * 16 15 14 49 49 H 1.09004 * 109.47066 * 60.00378 * 17 16 15 50 50 H 1.08994 * 109.47405 * 300.00209 * 17 16 15 51 51 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 52 52 H 1.09005 * 109.46344 * 181.78330 * 26 15 14 53 53 H 1.08991 * 109.46759 * 301.76239 * 26 15 14 54 54 H 1.09005 * 109.50770 * 297.90138 * 27 8 7 55 55 H 1.09000 * 109.50293 * 57.97435 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1576 2.5825 0.0000 6 7 5.6180 2.4670 0.0000 7 6 6.2993 2.4132 1.2877 8 6 7.7045 1.8360 1.1259 9 6 8.4216 2.5841 -0.0027 10 6 7.7263 2.2488 -1.3247 11 6 6.2413 2.4172 -1.1778 12 8 5.5725 2.5134 -2.1851 13 6 7.6158 0.3490 0.7772 14 6 9.0285 -0.2296 0.6676 15 7 9.7342 -0.0451 1.9420 16 6 11.0430 -0.7119 1.9204 17 6 11.8481 -0.2953 3.1529 18 6 13.1909 -0.9789 3.1304 19 1 13.4450 -1.6436 2.3179 20 6 14.0977 -0.7508 4.1437 21 7 13.7885 0.0589 5.1328 22 14 15.7652 -1.5921 4.1117 23 1 16.7377 -0.7362 3.3859 24 1 16.2376 -1.8077 5.5030 25 1 15.6461 -2.9013 3.4210 26 6 9.8745 1.3791 2.2712 27 6 8.4873 2.0062 2.4292 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6884 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8574 0.6437 -0.8891 34 1 3.8567 0.6441 0.8909 35 1 3.8356 3.1240 0.8895 36 1 3.8363 3.1229 -0.8904 37 1 5.7285 1.7841 1.9707 38 1 6.3691 3.4198 1.7001 39 1 8.3680 3.6577 0.1774 40 1 9.4641 2.2686 -0.0469 41 1 8.0910 2.9165 -2.1051 42 1 7.9471 1.2171 -1.5985 43 1 7.0983 0.2287 -0.1746 44 1 7.0669 -0.1765 1.5587 45 1 9.5710 0.2846 -0.1258 46 1 8.9684 -1.2931 0.4363 47 1 11.5832 -0.4227 1.0188 48 1 10.9005 -1.7925 1.9276 49 1 11.3079 -0.5845 4.0545 50 1 11.9907 0.7852 3.1457 51 1 14.4263 0.2191 5.8460 52 1 10.4287 1.4834 3.2040 53 1 10.4130 1.8856 1.4703 54 1 8.5913 3.0674 2.6555 55 1 7.9541 1.5117 3.2412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039913.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:16 Heat of formation + Delta-G solvation = -111.638884 kcal Electronic energy + Delta-G solvation = -30834.241210 eV Core-core repulsion = 26869.582499 eV Total energy + Delta-G solvation = -3964.658711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.21195 -40.13672 -38.91432 -37.58928 -36.32829 -35.03623 -33.23209 -32.54894 -32.04861 -30.75112 -28.50092 -27.82427 -26.26136 -25.98751 -25.02703 -24.31503 -23.56370 -22.65710 -21.69436 -20.27909 -18.82195 -18.49997 -17.87750 -17.67725 -17.13648 -16.95266 -16.82709 -16.55193 -16.11301 -16.05860 -15.76230 -15.60951 -15.41665 -15.12487 -14.85413 -14.69474 -14.33014 -14.26209 -13.93174 -13.55058 -13.45747 -13.12840 -13.10659 -13.04801 -12.91776 -12.80716 -12.72174 -12.68439 -12.39700 -12.15361 -12.06801 -12.04722 -11.87730 -11.84976 -11.63286 -11.38703 -11.26257 -11.13397 -10.90859 -10.65838 -10.63001 -10.50864 -9.73245 -9.05462 -8.19277 -6.29499 1.40721 1.41559 1.52645 1.59004 1.97222 2.40900 2.88225 3.12238 3.14294 3.49705 3.57945 3.67081 3.72141 3.94814 4.09928 4.13084 4.21009 4.24301 4.29206 4.34676 4.40414 4.43627 4.46734 4.49317 4.52513 4.55297 4.57365 4.64149 4.66436 4.69572 4.72687 4.78586 4.78887 4.85160 4.89234 4.99278 5.01705 5.05228 5.08424 5.10746 5.15711 5.17763 5.28025 5.34147 5.44307 5.48092 5.51341 5.71020 5.81212 6.13762 6.22914 6.36604 6.42077 6.43910 6.86972 7.13565 7.39113 8.92274 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.002124 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.121095 B =13177.932471 C =13748.087309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.065 3.935 4 C -0.125 4.125 5 C 0.112 3.888 6 N -0.593 5.593 7 C 0.125 3.875 8 C -0.065 4.065 9 C -0.113 4.113 10 C -0.131 4.131 11 C 0.517 3.483 12 O -0.600 6.600 13 C -0.095 4.095 14 C 0.055 3.945 15 N -0.544 5.544 16 C 0.078 3.922 17 C 0.032 3.968 18 C -0.545 4.545 19 H 0.056 0.944 20 C 0.004 3.996 21 N -0.928 5.928 22 Si 0.962 3.038 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.266 1.266 26 C 0.051 3.949 27 C -0.090 4.090 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.033 0.967 46 H 0.067 0.933 47 H 0.017 0.983 48 H 0.057 0.943 49 H -0.006 1.006 50 H 0.005 0.995 51 H 0.264 0.736 52 H 0.059 0.941 53 H 0.030 0.970 54 H 0.088 0.912 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.840 7.828 -9.029 26.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.012 4.012 4 C -0.164 4.164 5 C -0.011 4.011 6 N -0.323 5.323 7 C 0.003 3.997 8 C -0.066 4.066 9 C -0.150 4.150 10 C -0.170 4.170 11 C 0.307 3.693 12 O -0.482 6.482 13 C -0.133 4.133 14 C -0.073 4.073 15 N -0.269 5.269 16 C -0.050 4.050 17 C -0.005 4.005 18 C -0.584 4.584 19 H 0.075 0.925 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.787 3.213 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.190 1.190 26 C -0.077 4.077 27 C -0.128 4.128 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.035 0.965 48 H 0.076 0.924 49 H 0.012 0.988 50 H 0.023 0.977 51 H 0.072 0.928 52 H 0.078 0.922 53 H 0.048 0.952 54 H 0.107 0.893 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.273 7.570 -9.007 26.974 hybrid contribution 1.518 -0.125 -0.478 1.597 sum -22.755 7.445 -9.485 25.752 Atomic orbital electron populations 1.22915 0.79409 1.03714 1.00977 1.87848 1.21616 1.29139 1.95647 1.22474 0.92910 0.84429 1.01369 1.21739 0.94103 0.98114 1.02466 1.21426 0.79025 0.96220 1.04418 1.47316 1.07562 1.71229 1.06225 1.21612 0.91781 1.02711 0.83563 1.20735 0.94629 0.95169 0.96043 1.21782 0.99761 1.01205 0.92258 1.21666 0.89994 1.05007 1.00350 1.20452 0.91267 0.74937 0.82639 1.90684 1.67460 1.52736 1.37320 1.21571 0.95435 0.94562 1.01729 1.22116 0.94943 1.00606 0.89637 1.61985 1.19636 1.13120 1.32168 1.21953 0.87777 0.97936 0.97322 1.19043 0.93192 0.95463 0.92800 1.21632 1.01188 1.27601 1.07942 0.92548 1.25896 1.02620 0.95921 0.95016 1.70085 1.37106 1.37694 1.11919 0.85491 0.79271 0.79101 0.77442 1.19812 1.20709 1.19006 1.22167 0.97795 0.87474 1.00224 1.21476 0.93759 1.01276 0.96317 0.92670 0.93338 0.88925 0.90981 0.92923 0.93680 0.90741 0.87170 0.90647 0.88936 0.89130 0.89774 0.90987 0.87883 0.88181 0.91575 0.91037 0.94838 0.91425 0.96456 0.92409 0.98804 0.97700 0.92770 0.92221 0.95236 0.89349 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.06 10.70 -148.98 -1.59 -9.66 16 3 C 0.07 0.95 5.94 71.98 0.43 1.38 16 4 C -0.13 -2.11 5.90 30.59 0.18 -1.93 16 5 C 0.11 1.65 5.22 86.38 0.45 2.11 16 6 N -0.59 -10.17 2.71 -826.85 -2.24 -12.41 16 7 C 0.13 1.70 5.01 86.44 0.43 2.13 16 8 C -0.07 -1.16 0.52 -52.19 -0.03 -1.19 16 9 C -0.11 -1.99 4.32 30.70 0.13 -1.86 16 10 C -0.13 -2.48 5.39 29.71 0.16 -2.32 16 11 C 0.52 11.62 6.69 87.71 0.59 12.21 16 12 O -0.60 -18.13 16.18 -3.06 -0.05 -18.18 16 13 C -0.10 -2.01 4.32 30.61 0.13 -1.87 16 14 C 0.05 1.46 5.18 86.33 0.45 1.91 16 15 N -0.54 -18.40 4.80 -896.31 -4.30 -22.71 16 16 C 0.08 3.23 5.21 86.30 0.45 3.68 16 17 C 0.03 1.67 4.22 29.85 0.13 1.80 16 18 C -0.55 -30.83 9.11 25.60 0.23 -30.59 16 19 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 20 C 0.00 0.21 5.46 84.66 0.46 0.67 16 21 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 22 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 C 0.05 1.59 4.61 86.33 0.40 1.99 16 27 C -0.09 -1.91 4.88 30.61 0.15 -1.76 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.73 8.14 -2.38 -0.02 0.72 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 0.94 8.02 -2.39 -0.02 0.92 16 36 H 0.08 1.37 7.13 -2.39 -0.02 1.35 16 37 H 0.09 1.08 8.08 -2.38 -0.02 1.07 16 38 H 0.09 0.93 8.11 -2.39 -0.02 0.91 16 39 H 0.08 1.29 8.13 -2.39 -0.02 1.27 16 40 H 0.07 1.48 5.01 -2.38 -0.01 1.47 16 41 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.10 1.93 6.83 -2.39 -0.02 1.92 16 43 H 0.07 1.36 5.72 -2.39 -0.01 1.35 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.03 0.88 6.62 -2.39 -0.02 0.86 16 46 H 0.07 1.83 8.12 -2.39 -0.02 1.81 16 47 H 0.02 0.72 8.08 -2.38 -0.02 0.70 16 48 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 49 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 50 H 0.00 0.26 6.21 -2.39 -0.01 0.25 16 51 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 52 H 0.06 2.29 5.81 -2.38 -0.01 2.27 16 53 H 0.03 0.91 6.38 -2.39 -0.02 0.90 16 54 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 55 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -71.33 411.66 0.95 -70.38 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.84 Total: 13.96 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 5.99 Total: -12.09 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -6.26 Total: -90.39 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -1.64 Total: -27.83 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -71.33 0.95 -70.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039913.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.259 kcal (2) G-P(sol) polarization free energy of solvation -71.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds