Wall clock time and date at job start Tue Mar 31 2020 22:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46623 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.46998 * 179.97438 * 5 4 3 7 7 C 1.46827 * 124.36554 * 89.99606 * 6 5 4 8 8 C 1.54602 * 105.49876 * 196.87819 * 7 6 5 9 9 C 1.54084 * 101.64524 * 335.05216 * 8 7 6 10 10 C 1.54361 * 109.16677 * 266.87610 * 9 8 7 11 11 C 1.46017 * 111.21415 * 160.37618 * 10 9 8 12 12 C 1.53943 * 112.63923 * 61.18958 * 11 10 9 13 13 N 1.44266 * 108.35078 * 278.24435 * 12 11 10 14 14 C 1.46895 * 110.99923 * 221.61535 * 13 12 11 15 15 C 1.52994 * 109.47594 * 66.04547 * 14 13 12 16 16 C 1.50701 * 109.47614 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99378 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00442 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99895 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00384 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47024 * 60.00020 * 20 18 16 22 22 H 1.48501 * 109.47287 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47098 * 300.00031 * 20 18 16 24 24 C 1.48055 * 113.66386 * 95.64353 * 13 12 11 25 25 C 1.50269 * 111.44562 * 145.66896 * 9 8 7 26 26 C 1.34591 * 124.36258 * 269.70310 * 6 5 4 27 27 O 1.21274 * 125.03898 * 359.30306 * 26 6 5 28 28 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 29 29 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 31 31 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 32 32 H 1.09001 * 109.46558 * 299.99719 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99938 * 4 3 2 34 34 H 1.09001 * 109.47362 * 299.99215 * 4 3 2 35 35 H 1.08993 * 109.46955 * 300.00075 * 5 4 3 36 36 H 1.09000 * 109.47050 * 59.99904 * 5 4 3 37 37 H 1.08998 * 110.24324 * 315.88523 * 7 6 5 38 38 H 1.09001 * 110.23472 * 77.78471 * 7 6 5 39 39 H 1.08997 * 110.99317 * 93.13919 * 8 7 6 40 40 H 1.08998 * 110.99321 * 216.92585 * 8 7 6 41 41 H 1.09005 * 109.13243 * 280.82115 * 10 9 8 42 42 H 1.09002 * 109.12933 * 39.98647 * 10 9 8 43 43 H 1.08999 * 108.85214 * 182.00334 * 11 10 9 44 44 H 1.09000 * 108.85166 * 300.48088 * 11 10 9 45 45 H 1.08996 * 109.68996 * 37.96315 * 12 11 10 46 46 H 1.09005 * 109.68638 * 158.49220 * 12 11 10 47 47 H 1.08997 * 109.47454 * 186.05060 * 14 13 12 48 48 H 1.09004 * 109.47534 * 306.04646 * 14 13 12 49 49 H 1.08996 * 109.47358 * 300.00206 * 15 14 13 50 50 H 1.09000 * 109.46881 * 59.99911 * 15 14 13 51 51 H 0.97001 * 120.00143 * 179.97438 * 19 18 16 52 52 H 1.09002 * 108.73427 * 79.28053 * 24 13 12 53 53 H 1.09000 * 108.72813 * 197.46557 * 24 13 12 54 54 H 1.08998 * 108.83739 * 333.70542 * 25 9 8 55 55 H 1.08999 * 108.84214 * 92.06185 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5825 -0.0013 6 7 5.6181 2.4669 -0.0013 7 6 6.4442 2.4008 -1.2133 8 6 7.8157 1.8586 -0.7493 9 6 7.8294 2.2755 0.7340 10 6 8.5283 3.6452 0.8690 11 6 8.1758 4.2965 2.1274 12 6 8.6053 3.4783 3.3587 13 7 7.6098 2.4620 3.5984 14 6 7.3267 2.3306 5.0338 15 6 6.6669 3.6136 5.5431 16 6 6.3759 3.4787 7.0155 17 1 6.6360 2.5688 7.5361 18 6 5.7777 4.5165 7.6981 19 7 5.4605 5.6243 7.0640 20 14 5.4176 4.3495 9.5233 21 1 6.6869 4.1206 10.2593 22 1 4.7760 5.5943 10.0173 23 1 4.5031 3.2005 9.7444 24 6 7.9450 1.1493 3.0013 25 6 8.5410 1.2605 1.5834 26 6 6.3759 2.4131 1.1097 27 8 5.9521 2.4652 2.2448 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8463 -0.8900 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6437 0.8892 35 1 3.8356 3.1231 -0.8912 36 1 3.8364 3.1236 0.8887 37 1 5.9961 1.7218 -1.9387 38 1 6.5572 3.3944 -1.6471 39 1 7.8614 0.7743 -0.8506 40 1 8.6293 2.3345 -1.2968 41 1 9.6081 3.5005 0.8318 42 1 8.2249 4.2843 0.0397 43 1 8.6600 5.2722 2.1667 44 1 7.0956 4.4384 2.1601 45 1 9.5708 3.0092 3.1694 46 1 8.6791 4.1329 4.2271 47 1 6.6551 1.4876 5.1961 48 1 8.2583 2.1621 5.5741 49 1 7.3385 4.4567 5.3809 50 1 5.7353 3.7822 5.0029 51 1 5.0393 6.3544 7.5441 52 1 8.6657 0.6455 3.6455 53 1 7.0388 0.5456 2.9520 54 1 8.4765 0.2872 1.0970 55 1 9.5907 1.5427 1.6640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040793.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:29 Heat of formation + Delta-G solvation = -73.879838 kcal Electronic energy + Delta-G solvation = -31959.299871 eV Core-core repulsion = 27996.278516 eV Total energy + Delta-G solvation = -3963.021356 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.17101 -39.27013 -38.79233 -37.16846 -36.41696 -35.06877 -34.03225 -33.19414 -31.59511 -29.98208 -27.91122 -27.56207 -26.70640 -26.07049 -25.51092 -23.35489 -22.89839 -22.34372 -21.71511 -20.70981 -19.31805 -18.61768 -17.68304 -17.29708 -17.18485 -16.81196 -16.70493 -16.49160 -16.21438 -15.94161 -15.62112 -15.47662 -14.99649 -14.77614 -14.50620 -14.39155 -14.32291 -14.08022 -13.89516 -13.54553 -13.37623 -13.18668 -13.08652 -13.07663 -12.86765 -12.82436 -12.61447 -12.49467 -12.33191 -12.12722 -12.07132 -11.95058 -11.84824 -11.71105 -11.59965 -11.31407 -11.27271 -11.18865 -11.03973 -10.66231 -10.54027 -10.03066 -9.38608 -8.39081 -8.20323 -6.32635 1.35094 1.40318 1.48047 2.03611 2.24651 2.38569 2.90210 3.11327 3.20861 3.44275 3.70517 3.83453 3.89821 4.08549 4.13067 4.16406 4.20919 4.26728 4.31107 4.37480 4.42266 4.45023 4.48283 4.50987 4.52515 4.56649 4.59869 4.65906 4.70320 4.77914 4.81943 4.84541 4.85876 4.91064 5.01551 5.07548 5.08739 5.11975 5.15633 5.18663 5.22501 5.26167 5.35115 5.43251 5.44766 5.55222 5.75982 5.81234 5.94662 6.19407 6.19818 6.48418 6.52561 6.76463 6.85655 7.35716 7.76424 8.91815 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008252 B = 0.003745 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.320011 B = 7474.994795 C = 9945.686577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.064 3.936 4 C -0.120 4.120 5 C 0.136 3.864 6 N -0.637 5.637 7 C 0.102 3.898 8 C -0.112 4.112 9 C -0.083 4.083 10 C -0.084 4.084 11 C -0.115 4.115 12 C 0.064 3.936 13 N -0.513 5.513 14 C 0.091 3.909 15 C 0.053 3.947 16 C -0.549 4.549 17 H 0.055 0.945 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.269 1.269 24 C 0.072 3.928 25 C -0.093 4.093 26 C 0.496 3.504 27 O -0.497 6.497 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.107 0.893 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.034 0.966 45 H 0.051 0.949 46 H 0.036 0.964 47 H 0.039 0.961 48 H 0.008 0.992 49 H -0.010 1.010 50 H -0.021 1.021 51 H 0.263 0.737 52 H 0.020 0.980 53 H 0.041 0.959 54 H 0.091 0.909 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 -8.809 -25.924 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.013 4.013 4 C -0.159 4.159 5 C 0.013 3.987 6 N -0.374 5.374 7 C -0.020 4.020 8 C -0.150 4.150 9 C -0.087 4.087 10 C -0.121 4.121 11 C -0.153 4.153 12 C -0.065 4.065 13 N -0.238 5.238 14 C -0.037 4.037 15 C 0.016 3.984 16 C -0.588 4.588 17 H 0.074 0.926 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.194 1.194 24 C -0.055 4.055 25 C -0.130 4.130 26 C 0.282 3.718 27 O -0.367 6.367 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.125 0.875 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.136 0.864 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.026 0.974 49 H 0.008 0.992 50 H -0.002 1.002 51 H 0.072 0.928 52 H 0.038 0.962 53 H 0.059 0.941 54 H 0.110 0.890 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.433 -8.619 -25.502 26.958 hybrid contribution -0.310 0.252 2.017 2.056 sum 1.123 -8.366 -23.486 24.957 Atomic orbital electron populations 1.22925 0.79469 1.03826 1.00848 1.87828 1.21572 1.28869 1.95622 1.22478 0.93323 0.84490 1.01019 1.21748 0.93583 0.98187 1.02408 1.21054 0.79157 0.95611 1.02893 1.48562 1.05808 1.74832 1.08180 1.22268 0.90786 1.02382 0.86590 1.22772 0.97580 1.02771 0.91831 1.20887 0.92508 0.97662 0.97650 1.20538 1.01036 0.93831 0.96741 1.20517 1.00761 0.98569 0.95449 1.21745 0.92905 0.94163 0.97690 1.61076 1.43733 1.07117 1.11827 1.21793 0.96464 0.98232 0.87185 1.18753 0.93733 0.92292 0.93625 1.21644 1.40168 1.01193 0.95767 0.92633 1.26011 0.95131 0.94710 1.03840 1.70140 1.42710 1.05969 1.38303 0.85450 0.78870 0.77696 0.78686 1.18860 1.20338 1.19371 1.22322 0.97526 0.90014 0.95661 1.21327 0.99749 0.99450 0.92522 1.21190 0.89954 0.76178 0.84469 1.91058 1.77805 1.46729 1.21142 0.92304 0.88516 0.94098 0.94205 0.90530 0.89722 0.94455 0.87477 0.93363 0.88812 0.90207 0.88998 0.86435 0.88991 0.90247 0.92145 0.94685 0.93118 0.94499 0.94243 0.97372 0.99185 1.00248 0.92792 0.96181 0.94062 0.89042 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.02 10.70 -148.98 -1.59 -11.61 16 3 C 0.06 1.35 5.94 71.98 0.43 1.78 16 4 C -0.12 -2.74 5.91 30.60 0.18 -2.56 16 5 C 0.14 3.08 5.94 86.38 0.51 3.59 16 6 N -0.64 -14.91 2.94 -818.04 -2.40 -17.31 16 7 C 0.10 1.33 7.31 86.86 0.63 1.96 16 8 C -0.11 -1.32 6.09 31.51 0.19 -1.13 16 9 C -0.08 -1.82 0.57 -52.96 -0.03 -1.85 16 10 C -0.08 -1.82 4.30 28.91 0.12 -1.70 16 11 C -0.11 -3.76 5.18 28.77 0.15 -3.61 16 12 C 0.06 2.42 5.09 87.11 0.44 2.86 16 13 N -0.51 -21.73 1.17 -895.53 -1.05 -22.78 16 14 C 0.09 4.62 4.75 86.30 0.41 5.03 16 15 C 0.05 3.26 4.93 29.85 0.15 3.41 16 16 C -0.55 -34.79 9.11 25.60 0.23 -34.55 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.00 0.05 5.46 84.65 0.46 0.51 16 19 N -0.93 -61.05 13.29 21.45 0.28 -60.76 16 20 Si 0.97 47.45 29.54 68.60 2.03 49.48 16 21 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 24 C 0.07 2.45 4.43 86.49 0.38 2.83 16 25 C -0.09 -2.10 4.79 30.12 0.14 -1.96 16 26 C 0.50 15.40 5.48 87.71 0.48 15.88 16 27 O -0.50 -21.73 11.44 -3.01 -0.03 -21.76 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.45 7.92 -2.39 -0.02 1.43 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 0.90 7.50 -2.39 -0.02 0.88 16 40 H 0.12 0.74 7.86 -2.39 -0.02 0.72 16 41 H 0.09 1.54 7.63 -2.38 -0.02 1.52 16 42 H 0.08 1.43 7.94 -2.39 -0.02 1.41 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.03 1.45 6.22 -2.39 -0.01 1.44 16 45 H 0.05 1.61 6.77 -2.39 -0.02 1.60 16 46 H 0.04 1.66 5.87 -2.38 -0.01 1.65 16 47 H 0.04 2.06 8.04 -2.39 -0.02 2.04 16 48 H 0.01 0.41 8.12 -2.38 -0.02 0.39 16 49 H -0.01 -0.65 6.40 -2.39 -0.02 -0.67 16 50 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 51 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 52 H 0.02 0.66 8.02 -2.39 -0.02 0.64 16 53 H 0.04 1.57 7.51 -2.39 -0.02 1.55 16 54 H 0.09 1.63 7.40 -2.39 -0.02 1.61 16 55 H 0.08 1.63 6.71 -2.39 -0.02 1.61 16 Total: -1.00 -85.20 410.34 4.21 -81.00 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.83 Total: 11.59 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 6.14 Total: -7.84 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -3.17 Total: -100.85 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.63 Total: -33.37 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -85.20 4.21 -81.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040793.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.117 kcal (2) G-P(sol) polarization free energy of solvation -85.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds