Wall clock time and date at job start Tue Mar 31 2020 22:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00065 * 2 1 4 4 C 1.53004 * 109.47074 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46985 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47111 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00192 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99997 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00171 * 180.02562 * 7 6 5 10 10 H 1.08993 * 115.55004 * 301.59483 * 9 7 6 11 11 C 1.53053 * 117.53227 * 155.84622 * 9 7 6 12 12 C 1.52737 * 59.94328 * 252.54329 * 11 9 7 13 13 C 1.53219 * 117.84453 * 252.25963 * 12 11 9 14 14 C 1.53256 * 108.61861 * 162.99303 * 13 12 11 15 15 N 1.46807 * 109.44710 * 55.59772 * 14 13 12 16 16 C 1.46899 * 110.99863 * 170.80088 * 15 14 13 17 17 C 1.53003 * 109.46888 * 65.78466 * 16 15 14 18 18 C 1.53004 * 109.47125 * 184.99335 * 17 16 15 19 19 C 1.50699 * 109.47346 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99999 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00422 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99918 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00236 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46993 * 89.99904 * 23 21 19 25 25 H 1.48497 * 109.47046 * 210.00003 * 23 21 19 26 26 H 1.48501 * 109.46772 * 330.00046 * 23 21 19 27 27 C 1.46804 * 111.57183 * 295.17204 * 15 14 13 28 28 C 1.53213 * 117.84494 * 107.74949 * 12 11 9 29 29 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47022 * 300.00185 * 1 2 3 31 31 H 1.08997 * 109.47222 * 60.00153 * 1 2 3 32 32 H 1.08995 * 109.47391 * 60.00087 * 3 2 1 33 33 H 1.09008 * 109.46960 * 299.99712 * 3 2 1 34 34 H 1.09006 * 109.46629 * 59.99966 * 4 3 2 35 35 H 1.08997 * 109.46902 * 300.00169 * 4 3 2 36 36 H 1.09000 * 109.46785 * 59.99860 * 5 4 3 37 37 H 1.08998 * 109.47067 * 300.00292 * 5 4 3 38 38 H 0.97002 * 120.00197 * 359.97438 * 6 5 4 39 39 H 1.09005 * 117.50021 * 145.06993 * 11 9 7 40 40 H 1.09001 * 117.50882 * 0.02562 * 11 9 7 41 41 H 1.09001 * 109.61286 * 43.24889 * 13 12 11 42 42 H 1.09002 * 109.60823 * 282.72962 * 13 12 11 43 43 H 1.08999 * 109.47275 * 295.60139 * 14 13 12 44 44 H 1.09004 * 109.47989 * 175.59656 * 14 13 12 45 45 H 1.09003 * 109.47278 * 185.78134 * 16 15 14 46 46 H 1.08996 * 109.47488 * 305.78532 * 16 15 14 47 47 H 1.08999 * 109.47156 * 304.98660 * 17 16 15 48 48 H 1.09001 * 109.47464 * 64.99358 * 17 16 15 49 49 H 1.09004 * 109.47005 * 299.99712 * 18 17 16 50 50 H 1.08995 * 109.47595 * 59.99815 * 18 17 16 51 51 H 0.96995 * 120.00090 * 180.02562 * 22 21 19 52 52 H 1.08999 * 109.47897 * 184.82045 * 27 15 14 53 53 H 1.09006 * 109.47661 * 304.83834 * 27 15 14 54 54 H 1.08998 * 109.61483 * 316.75262 * 28 12 11 55 55 H 1.09003 * 109.60866 * 77.27155 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6181 2.4667 -0.0013 7 6 6.3821 3.5770 -0.0013 8 8 5.8605 4.6720 -0.0018 9 6 7.8845 3.4580 -0.0019 10 1 8.3127 2.9071 0.8354 11 6 8.6873 4.6368 -0.5572 12 6 8.5822 3.3389 -1.3556 13 6 9.8266 2.4492 -1.4421 14 6 9.3973 1.0506 -1.8986 15 7 8.6627 1.1540 -3.1655 16 6 8.4243 -0.1743 -3.7457 17 6 7.4831 -0.9666 -2.8361 18 6 7.3333 -2.3911 -3.3741 19 6 6.4057 -3.1714 -2.4786 20 1 5.9672 -2.6986 -1.6122 21 6 6.1168 -4.4887 -2.7654 22 7 6.6504 -5.0642 -3.8206 23 14 4.9675 -5.4560 -1.6549 24 1 3.5707 -5.3041 -2.1356 25 1 5.3465 -6.8916 -1.6806 26 1 5.0718 -4.9412 -0.2659 27 6 7.4032 1.8898 -3.0005 28 6 7.7071 3.3412 -2.6132 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.8566 0.6438 -0.8909 35 1 3.8574 0.6435 0.8891 36 1 3.8365 3.1234 0.8887 37 1 3.8357 3.1230 -0.8912 38 1 6.0353 1.5910 -0.0005 39 1 9.6438 4.8613 -0.0851 40 1 8.1289 5.4989 -0.9219 41 1 10.2994 2.3851 -0.4621 42 1 10.5279 2.8701 -2.1627 43 1 8.7543 0.6025 -1.1411 44 1 10.2804 0.4275 -2.0404 45 1 7.9706 -0.0645 -4.7307 46 1 9.3716 -0.7054 -3.8391 47 1 7.8955 -1.0007 -1.8277 48 1 6.5068 -0.4824 -2.8133 49 1 6.9209 -2.3572 -4.3825 50 1 8.3095 -2.8755 -3.3969 51 1 6.4468 -5.9908 -4.0226 52 1 6.8468 1.8727 -3.9376 53 1 6.8086 1.4213 -2.2161 54 1 6.7751 3.8685 -2.4095 55 1 8.2385 3.8336 -3.4277 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274043314.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:54 Heat of formation + Delta-G solvation = -101.720250 kcal Electronic energy + Delta-G solvation = -30899.777865 eV Core-core repulsion = 26935.549258 eV Total energy + Delta-G solvation = -3964.228607 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.58280 -39.89668 -38.99999 -37.78052 -36.42081 -35.53315 -33.43377 -32.95242 -31.94895 -30.74129 -28.27332 -27.62707 -26.48263 -24.96917 -24.38462 -24.12264 -22.96293 -22.72379 -21.64497 -21.14879 -19.39392 -18.49497 -18.00338 -17.68586 -17.36774 -16.84659 -16.72240 -16.56550 -16.31041 -16.07753 -15.77925 -15.68889 -15.33352 -15.26342 -15.00681 -14.55887 -14.30504 -14.11025 -13.81799 -13.44355 -13.34814 -13.33259 -13.14829 -13.01698 -12.84721 -12.81353 -12.71147 -12.53733 -12.32773 -12.30732 -12.23805 -12.14468 -12.08545 -11.47678 -11.39118 -11.30693 -11.28529 -11.09284 -10.88013 -10.67066 -10.58679 -10.54699 -10.15630 -9.09133 -8.19066 -6.30018 1.38398 1.39408 1.49882 1.50365 2.02260 2.39960 2.72916 2.87212 3.07869 3.13750 3.54944 3.69329 3.82653 3.87008 3.87584 3.97164 4.07167 4.12604 4.18731 4.33420 4.36456 4.38615 4.40723 4.43138 4.43983 4.52647 4.56887 4.60160 4.61375 4.67492 4.74127 4.81966 4.87630 4.90305 4.94232 4.96901 5.01722 5.05820 5.07204 5.08180 5.15494 5.22047 5.25863 5.31066 5.37711 5.39955 5.51953 5.73601 5.85812 6.15833 6.19837 6.26734 6.28555 6.44654 6.86796 7.16610 7.39247 8.91840 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006475 B = 0.004321 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4323.593778 B = 6478.449978 C =10140.288939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.064 3.936 4 C -0.127 4.127 5 C 0.130 3.870 6 N -0.719 5.719 7 C 0.548 3.452 8 O -0.581 6.581 9 C -0.193 4.193 10 H 0.146 0.854 11 C -0.129 4.129 12 C -0.092 4.092 13 C -0.068 4.068 14 C 0.050 3.950 15 N -0.534 5.534 16 C 0.064 3.936 17 C -0.122 4.122 18 C 0.028 3.972 19 C -0.537 4.537 20 H 0.056 0.944 21 C 0.003 3.997 22 N -0.932 5.932 23 Si 0.956 3.044 24 H -0.275 1.275 25 H -0.281 1.281 26 H -0.264 1.264 27 C 0.060 3.940 28 C -0.075 4.075 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.409 0.591 39 H 0.128 0.872 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.045 0.955 49 H -0.012 1.012 50 H -0.008 1.008 51 H 0.263 0.737 52 H 0.064 0.936 53 H 0.032 0.968 54 H 0.054 0.946 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 18.770 9.146 20.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.012 4.012 4 C -0.165 4.165 5 C 0.007 3.993 6 N -0.370 5.370 7 C 0.336 3.664 8 O -0.461 6.461 9 C -0.214 4.214 10 H 0.163 0.837 11 C -0.166 4.166 12 C -0.092 4.092 13 C -0.105 4.105 14 C -0.077 4.077 15 N -0.257 5.257 16 C -0.064 4.064 17 C -0.161 4.161 18 C -0.009 4.009 19 C -0.575 4.575 20 H 0.074 0.926 21 C -0.194 4.194 22 N -0.573 5.573 23 Si 0.781 3.219 24 H -0.201 1.201 25 H -0.207 1.207 26 H -0.188 1.188 27 C -0.068 4.068 28 C -0.113 4.113 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.245 0.755 39 H 0.146 0.854 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.049 0.951 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.007 0.993 50 H 0.011 0.989 51 H 0.072 0.928 52 H 0.082 0.918 53 H 0.050 0.950 54 H 0.073 0.927 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.127 19.492 8.732 21.388 hybrid contribution -1.434 -1.764 0.696 2.378 sum -2.561 17.728 9.428 20.242 Atomic orbital electron populations 1.22922 0.79344 1.03645 1.01123 1.87880 1.21712 1.29009 1.95649 1.22434 0.92700 0.84483 1.01618 1.21607 0.94635 0.96410 1.03860 1.21110 0.79419 0.96382 1.02418 1.45983 1.06948 1.09470 1.74631 1.20005 0.88929 0.83378 0.74115 1.90666 1.75673 1.28040 1.51726 1.22496 0.89885 1.07953 1.01080 0.83655 1.23077 1.01288 0.91181 1.01048 1.21550 0.97900 0.99994 0.89781 1.21244 0.94441 0.92272 1.02576 1.22180 0.97954 0.97812 0.89787 1.62077 1.20736 1.16276 1.26582 1.22130 0.98932 0.87941 0.97439 1.21970 0.98767 0.96219 0.99189 1.18922 0.94918 0.92243 0.94854 1.21653 1.27961 0.96861 1.11015 0.92554 1.25885 0.97785 0.99071 0.96700 1.70082 1.45622 1.13229 1.28334 0.85585 0.79039 0.77767 0.79536 1.20074 1.20663 1.18802 1.22014 0.90818 0.93845 1.00143 1.21171 0.98125 0.95528 0.96433 0.89233 0.92458 0.93082 0.91339 0.92221 0.91565 0.90355 0.90885 0.91742 0.75531 0.85417 0.89115 0.89002 0.89730 0.95077 0.90524 0.91725 0.91196 0.92989 0.93637 0.99321 0.98933 0.92838 0.91782 0.94966 0.92738 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.42 -10.75 10.70 -148.98 -1.59 -12.34 16 3 C 0.06 1.28 5.94 71.98 0.43 1.70 16 4 C -0.13 -2.67 5.70 30.60 0.17 -2.49 16 5 C 0.13 2.64 5.67 86.38 0.49 3.13 16 6 N -0.72 -15.30 5.44 -463.07 -2.52 -17.81 16 7 C 0.55 13.04 5.86 87.66 0.51 13.56 16 8 O -0.58 -17.82 16.54 -3.04 -0.05 -17.87 16 9 C -0.19 -3.59 5.88 -11.60 -0.07 -3.66 16 10 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 11 C -0.13 -2.16 9.51 30.52 0.29 -1.87 16 12 C -0.09 -1.68 2.02 -52.20 -0.11 -1.78 16 13 C -0.07 -1.14 5.87 30.75 0.18 -0.96 16 14 C 0.05 1.15 4.99 86.41 0.43 1.58 16 15 N -0.53 -14.27 4.78 -895.66 -4.28 -18.55 16 16 C 0.06 2.09 5.32 86.30 0.46 2.55 16 17 C -0.12 -4.80 4.44 30.60 0.14 -4.67 16 18 C 0.03 1.47 4.97 29.85 0.15 1.62 16 19 C -0.54 -30.32 9.11 25.60 0.23 -30.09 16 20 H 0.06 3.07 7.74 -2.91 -0.02 3.04 16 21 C 0.00 0.20 5.46 84.66 0.46 0.66 16 22 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 23 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 26 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 27 C 0.06 1.54 4.78 86.41 0.41 1.95 16 28 C -0.07 -1.64 5.52 30.75 0.17 -1.47 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.41 8.15 8.30 -92.71 -0.77 7.38 16 39 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.09 1.81 7.88 -2.39 -0.02 1.79 16 41 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.03 0.76 6.79 -2.39 -0.02 0.75 16 44 H 0.08 1.75 8.00 -2.38 -0.02 1.73 16 45 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.07 2.32 8.03 -2.39 -0.02 2.30 16 47 H 0.05 1.98 6.53 -2.39 -0.02 1.97 16 48 H 0.04 1.78 6.88 -2.39 -0.02 1.77 16 49 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 50 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 51 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 52 H 0.06 1.74 8.09 -2.39 -0.02 1.72 16 53 H 0.03 0.87 6.62 -2.38 -0.02 0.86 16 54 H 0.05 1.32 6.85 -2.39 -0.02 1.30 16 55 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -70.57 432.01 -0.46 -71.03 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.07 Total: 23.97 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 5.60 Total: -18.54 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -6.52 Total: -92.83 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.64 Total: -30.22 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -70.57 -0.46 -71.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043314.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.691 kcal (2) G-P(sol) polarization free energy of solvation -70.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds