Wall clock time and date at job start Tue Mar 31 2020 22:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99744 * 2 1 4 4 C 1.53004 * 109.46582 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46923 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.47281 * 180.02562 * 5 4 3 7 7 C 1.46924 * 124.34410 * 270.00292 * 6 5 4 8 8 C 1.53815 * 105.33526 * 196.39160 * 7 6 5 9 9 C 1.53978 * 102.47474 * 335.29449 * 8 7 6 10 10 C 1.34485 * 124.35064 * 89.97129 * 6 5 4 11 11 O 1.21288 * 124.94313 * 359.68062 * 10 6 5 12 12 C 1.52244 * 110.62165 * 93.11710 * 8 7 6 13 13 C 1.53253 * 109.36825 * 180.96983 * 12 8 7 14 14 C 1.53131 * 109.06858 * 303.55085 * 13 12 8 15 15 C 1.53044 * 109.37890 * 58.25746 * 14 13 12 16 16 N 1.45970 * 110.79076 * 217.20449 * 8 7 6 17 17 C 1.46907 * 110.99776 * 52.46918 * 16 8 7 18 18 C 1.52999 * 109.47047 * 175.34640 * 17 16 8 19 19 C 1.52998 * 109.47006 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47248 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99759 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00018 * 180.02562 * 20 19 18 23 23 N 1.31507 * 120.00198 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99826 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47046 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.47287 * 300.00291 * 24 22 20 27 27 H 1.48500 * 109.47234 * 60.00213 * 24 22 20 28 28 H 1.08999 * 109.47194 * 59.99820 * 1 2 3 29 29 H 1.08996 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46902 * 299.99813 * 1 2 3 31 31 H 1.09000 * 109.47073 * 60.00080 * 3 2 1 32 32 H 1.08996 * 109.47076 * 299.99678 * 3 2 1 33 33 H 1.09003 * 109.46841 * 59.99977 * 4 3 2 34 34 H 1.08990 * 109.47640 * 300.00021 * 4 3 2 35 35 H 1.09000 * 109.46747 * 60.00300 * 5 4 3 36 36 H 1.09004 * 109.47019 * 300.00478 * 5 4 3 37 37 H 1.09002 * 110.27413 * 77.42439 * 7 6 5 38 38 H 1.08998 * 110.27034 * 315.35882 * 7 6 5 39 39 H 1.09006 * 110.51186 * 142.76702 * 9 8 7 40 40 H 1.09003 * 110.51450 * 265.47324 * 9 8 7 41 41 H 1.08993 * 109.48674 * 300.93219 * 12 8 7 42 42 H 1.08995 * 109.48719 * 60.98060 * 12 8 7 43 43 H 1.08994 * 109.54092 * 63.42353 * 13 12 8 44 44 H 1.08995 * 109.53893 * 183.59119 * 13 12 8 45 45 H 1.08992 * 109.48901 * 178.23111 * 14 13 12 46 46 H 1.09004 * 109.48675 * 298.27287 * 14 13 12 47 47 H 1.08994 * 109.46855 * 180.21827 * 15 14 13 48 48 H 1.08999 * 109.46374 * 60.22686 * 15 14 13 49 49 H 1.09000 * 109.46710 * 55.35171 * 17 16 8 50 50 H 1.08997 * 109.46816 * 295.34722 * 17 16 8 51 51 H 1.09004 * 109.46845 * 60.00167 * 18 17 16 52 52 H 1.09002 * 109.47272 * 300.00199 * 18 17 16 53 53 H 1.09004 * 109.46994 * 60.00488 * 19 18 17 54 54 H 1.09002 * 109.47456 * 300.00317 * 19 18 17 55 55 H 0.97000 * 119.99794 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6183 2.4667 0.0000 7 6 6.4446 2.4017 1.2131 8 6 7.8778 2.7080 0.7459 9 6 7.8385 2.2989 -0.7380 10 6 6.3747 2.4057 -1.1103 11 8 5.9466 2.4330 -2.2448 12 6 8.1800 4.1939 0.8819 13 6 9.6038 4.4703 0.3868 14 6 10.5852 3.5957 1.1723 15 6 10.2127 2.1228 0.9875 16 7 8.8458 1.8976 1.4786 17 6 8.4928 0.4729 1.4181 18 6 9.5880 -0.3532 2.0954 19 6 9.2200 -1.8369 2.0329 20 6 10.2991 -2.6507 2.6995 21 1 11.1610 -2.1587 3.1256 22 6 10.1860 -4.0232 2.7655 23 7 9.1367 -4.6223 2.2463 24 14 11.5233 -5.0319 3.5925 25 1 11.1668 -6.4721 3.5306 26 1 12.8142 -4.8114 2.8921 27 1 11.6525 -4.6139 5.0116 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6435 -0.8891 34 1 3.8568 0.6439 0.8907 35 1 3.8359 3.1238 0.8896 36 1 3.8364 3.1228 -0.8904 37 1 6.3950 1.4048 1.6509 38 1 6.1149 3.1488 1.9350 39 1 8.4365 2.9839 -1.3390 40 1 8.1902 1.2745 -0.8612 41 1 7.4700 4.7655 0.2843 42 1 8.0949 4.4881 1.9279 43 1 9.6732 4.2330 -0.6747 44 1 9.8460 5.5216 0.5419 45 1 11.5971 3.7638 0.8040 46 1 10.5356 3.8535 2.2302 47 1 10.9081 1.4990 1.5492 48 1 10.2660 1.8646 -0.0701 49 1 8.3980 0.1660 0.3765 50 1 7.5453 0.3112 1.9322 51 1 9.6828 -0.0463 3.1371 52 1 10.5355 -0.1915 1.5813 53 1 9.1249 -2.1441 0.9914 54 1 8.2726 -1.9983 2.5473 55 1 8.4422 -4.0985 1.8173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274044049.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:20 Heat of formation + Delta-G solvation = -110.545159 kcal Electronic energy + Delta-G solvation = -31010.866862 eV Core-core repulsion = 27046.255578 eV Total energy + Delta-G solvation = -3964.611283 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.48499 -39.89447 -38.97980 -37.30100 -36.65744 -34.97803 -34.86492 -32.46933 -31.90955 -29.83404 -28.27456 -28.04594 -27.08134 -25.70419 -25.58177 -24.15015 -22.96492 -22.47915 -21.70524 -20.66209 -19.71177 -18.94028 -18.15351 -17.52941 -17.31569 -17.04603 -16.62952 -16.48967 -16.34872 -16.01492 -15.65609 -15.47401 -15.27788 -15.14036 -15.05748 -14.92765 -14.70041 -14.31671 -14.16950 -13.81681 -13.56054 -13.33494 -13.28757 -13.17202 -12.98420 -12.76413 -12.65799 -12.51932 -12.41462 -12.22090 -12.10449 -11.98848 -11.96205 -11.77634 -11.69587 -11.48786 -11.24835 -11.14173 -11.04583 -10.68348 -10.64832 -10.54113 -9.84161 -9.32686 -8.69035 -6.39651 1.36434 1.52210 1.60989 1.80107 1.81684 2.56085 2.65972 2.82910 3.15938 3.25638 3.44000 3.60444 3.71342 3.82622 3.91380 4.02985 4.03881 4.11643 4.14023 4.21921 4.27619 4.30902 4.38929 4.40792 4.41912 4.46948 4.50389 4.52523 4.55814 4.56324 4.66508 4.71239 4.72476 4.80989 4.84829 4.92626 4.93519 4.94954 5.01689 5.03982 5.07739 5.12928 5.23293 5.31474 5.42156 5.44402 5.48917 5.53563 5.90247 5.96568 6.04171 6.13474 6.19178 6.19706 6.57487 6.98190 7.42995 8.71480 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007202 B = 0.003372 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3886.834005 B = 8302.420607 C =11568.727789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.067 3.933 4 C -0.135 4.135 5 C 0.131 3.869 6 N -0.609 5.609 7 C 0.103 3.897 8 C 0.113 3.887 9 C -0.189 4.189 10 C 0.517 3.483 11 O -0.577 6.577 12 C -0.093 4.093 13 C -0.120 4.120 14 C -0.110 4.110 15 C 0.044 3.956 16 N -0.511 5.511 17 C 0.058 3.942 18 C -0.085 4.085 19 C 0.010 3.990 20 C -0.616 4.616 21 H 0.053 0.947 22 C -0.042 4.042 23 N -0.939 5.939 24 Si 1.118 2.882 25 H -0.285 1.285 26 H -0.268 1.268 27 H -0.266 1.266 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.028 0.972 49 H 0.021 0.979 50 H 0.077 0.923 51 H 0.059 0.941 52 H 0.055 0.945 53 H -0.020 1.020 54 H -0.012 1.012 55 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.653 23.777 -1.199 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.010 4.010 4 C -0.174 4.174 5 C 0.010 3.990 6 N -0.341 5.341 7 C -0.019 4.019 8 C 0.022 3.978 9 C -0.230 4.230 10 C 0.306 3.694 11 O -0.458 6.458 12 C -0.131 4.131 13 C -0.158 4.158 14 C -0.147 4.147 15 C -0.083 4.083 16 N -0.234 5.234 17 C -0.069 4.069 18 C -0.123 4.123 19 C -0.027 4.027 20 C -0.654 4.654 21 H 0.071 0.929 22 C -0.239 4.239 23 N -0.577 5.577 24 Si 0.938 3.062 25 H -0.211 1.211 26 H -0.194 1.194 27 H -0.191 1.191 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.046 0.954 49 H 0.039 0.961 50 H 0.095 0.905 51 H 0.078 0.922 52 H 0.073 0.927 53 H -0.001 1.001 54 H 0.006 0.994 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.417 22.275 -0.877 24.200 hybrid contribution -0.878 0.578 -1.721 2.016 sum -10.295 22.853 -2.598 25.199 Atomic orbital electron populations 1.22926 0.79206 1.03684 1.01174 1.87874 1.21852 1.29288 1.95679 1.22465 0.92167 0.84501 1.01853 1.21864 0.94937 0.98500 1.02094 1.21389 0.76842 0.95676 1.05086 1.48386 1.07073 1.71657 1.06992 1.22442 0.88639 1.03976 0.86870 1.21426 0.91787 0.96310 0.88293 1.23125 0.94269 1.04593 1.01052 1.21125 0.89888 0.74268 0.84161 1.90677 1.79420 1.52825 1.22850 1.21453 0.97633 0.90471 1.03526 1.21651 0.94019 1.00778 0.99317 1.21566 0.99356 0.92131 1.01685 1.22302 0.89283 0.98851 0.97851 1.61828 1.02334 1.05213 1.54028 1.22216 0.99310 0.87306 0.98091 1.21365 0.97337 0.93409 1.00184 1.19134 0.95525 0.94027 0.94041 1.22491 1.07920 0.94630 1.40390 0.92886 1.27484 1.02001 0.98011 0.96376 1.70924 1.10212 1.39382 1.37163 0.82943 0.72620 0.74356 0.76260 1.21064 1.19362 1.19100 0.92999 0.89193 0.92451 0.90509 0.92204 0.94188 0.91521 0.86157 0.89956 0.90905 0.86425 0.86893 0.89216 0.90620 0.89034 0.92500 0.89457 0.90350 0.90623 0.90688 0.95354 0.96101 0.90515 0.92246 0.92667 1.00141 0.99389 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.43 -9.99 10.70 -148.98 -1.59 -11.59 16 3 C 0.07 1.19 5.94 71.98 0.43 1.62 16 4 C -0.14 -2.93 5.91 30.60 0.18 -2.75 16 5 C 0.13 2.30 5.93 86.38 0.51 2.81 16 6 N -0.61 -13.34 2.94 -818.59 -2.41 -15.74 16 7 C 0.10 1.99 6.38 86.57 0.55 2.54 16 8 C 0.11 2.31 0.61 4.06 0.00 2.31 16 9 C -0.19 -4.67 4.55 30.41 0.14 -4.53 16 10 C 0.52 14.62 8.03 87.93 0.71 15.33 16 11 O -0.58 -20.86 17.60 -3.05 -0.05 -20.91 16 12 C -0.09 -1.39 4.76 30.43 0.14 -1.24 16 13 C -0.12 -1.71 5.80 30.72 0.18 -1.53 16 14 C -0.11 -1.85 6.07 30.65 0.19 -1.67 16 15 C 0.04 1.05 4.77 86.30 0.41 1.46 16 16 N -0.51 -12.70 4.61 -846.54 -3.91 -16.60 16 17 C 0.06 1.88 4.41 86.30 0.38 2.26 16 18 C -0.09 -3.42 4.62 30.59 0.14 -3.28 16 19 C 0.01 0.54 4.28 29.85 0.13 0.67 16 20 C -0.62 -35.64 9.11 25.60 0.23 -35.41 16 21 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 22 C -0.04 -2.47 5.46 84.66 0.46 -2.00 16 23 N -0.94 -59.78 13.65 21.45 0.29 -59.49 16 24 Si 1.12 50.79 29.90 68.60 2.05 52.84 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.50 7.93 -2.39 -0.02 1.49 16 37 H 0.07 1.68 5.37 -2.39 -0.01 1.66 16 38 H 0.12 1.56 7.88 -2.39 -0.02 1.54 16 39 H 0.11 2.54 6.22 -2.38 -0.01 2.52 16 40 H 0.09 2.62 5.63 -2.39 -0.01 2.61 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 0.88 6.54 -2.39 -0.02 0.86 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.07 2.01 5.91 -2.39 -0.01 2.00 16 48 H 0.03 0.71 7.18 -2.39 -0.02 0.69 16 49 H 0.02 0.73 5.87 -2.39 -0.01 0.72 16 50 H 0.08 2.49 5.94 -2.39 -0.01 2.47 16 51 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 52 H 0.05 2.18 6.21 -2.39 -0.01 2.16 16 53 H -0.02 -1.12 8.01 -2.38 -0.02 -1.14 16 54 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 55 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 Total: -1.00 -76.29 414.02 1.37 -74.92 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.95 Total: 18.34 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 6.03 Total: -21.77 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -6.02 Total: -91.83 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.65 Total: -32.50 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.84 kcal Total: -76.29 1.37 -74.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274044049.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.623 kcal (2) G-P(sol) polarization free energy of solvation -76.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds