Wall clock time and date at job start Tue Mar 31 2020 22:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00006 * 2 1 4 4 C 1.53005 * 109.47007 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46844 * 180.02562 * 4 3 2 6 6 N 1.46505 * 109.47045 * 179.97438 * 5 4 3 7 7 C 1.46909 * 124.35239 * 89.99602 * 6 5 4 8 8 C 1.53845 * 105.34747 * 163.55470 * 7 6 5 9 9 C 1.53958 * 102.45853 * 24.71532 * 8 7 6 10 10 C 1.34503 * 124.34900 * 269.97967 * 6 5 4 11 11 O 1.21280 * 124.94859 * 0.39662 * 10 6 5 12 12 C 1.52237 * 110.58353 * 266.86539 * 8 7 6 13 13 C 1.53255 * 109.35551 * 293.64613 * 12 8 7 14 14 C 1.53131 * 109.05484 * 303.55490 * 13 12 8 15 15 C 1.53037 * 109.40843 * 58.25434 * 14 13 12 16 16 N 1.45968 * 110.74080 * 142.82828 * 8 7 6 17 17 C 1.46904 * 110.99829 * 299.61818 * 16 8 7 18 18 C 1.53003 * 109.46968 * 175.41599 * 17 16 8 19 19 C 1.53000 * 109.47159 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47368 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99850 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00174 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99762 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00212 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47078 * 59.99832 * 24 22 20 26 26 H 1.48494 * 109.47149 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47009 * 299.99997 * 24 22 20 28 28 H 1.08993 * 109.47084 * 299.99497 * 1 2 3 29 29 H 1.08999 * 109.47408 * 60.00106 * 1 2 3 30 30 H 1.08999 * 109.47108 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47202 * 60.00441 * 3 2 1 32 32 H 1.08999 * 109.47403 * 300.00222 * 3 2 1 33 33 H 1.08994 * 109.47340 * 60.00385 * 4 3 2 34 34 H 1.08997 * 109.46644 * 299.99897 * 4 3 2 35 35 H 1.08998 * 109.47469 * 60.00172 * 5 4 3 36 36 H 1.08999 * 109.47299 * 299.99853 * 5 4 3 37 37 H 1.09001 * 110.27002 * 44.58922 * 7 6 5 38 38 H 1.08997 * 110.27481 * 282.52465 * 7 6 5 39 39 H 1.09001 * 110.51010 * 94.52599 * 9 8 7 40 40 H 1.09003 * 110.50819 * 217.23128 * 9 8 7 41 41 H 1.09004 * 109.49011 * 53.60952 * 12 8 7 42 42 H 1.08995 * 109.49004 * 173.65373 * 12 8 7 43 43 H 1.08997 * 109.54170 * 63.43030 * 13 12 8 44 44 H 1.09003 * 109.54179 * 183.60180 * 13 12 8 45 45 H 1.09005 * 109.47928 * 178.22967 * 14 13 12 46 46 H 1.08991 * 109.48301 * 298.25766 * 14 13 12 47 47 H 1.09000 * 109.47003 * 180.23551 * 15 14 13 48 48 H 1.08998 * 109.47328 * 60.23435 * 15 14 13 49 49 H 1.09000 * 109.47369 * 295.41400 * 17 16 8 50 50 H 1.09002 * 109.47113 * 55.41594 * 17 16 8 51 51 H 1.09001 * 109.46952 * 299.99533 * 18 17 16 52 52 H 1.08994 * 109.47432 * 60.00259 * 18 17 16 53 53 H 1.09001 * 109.47010 * 300.00334 * 19 18 17 54 54 H 1.08999 * 109.47405 * 59.99505 * 19 18 17 55 55 H 0.96999 * 119.99784 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4666 0.0000 7 6 6.4447 2.4016 -1.2129 8 6 7.8779 2.7093 -0.7460 9 6 7.8387 2.3007 0.7379 10 6 6.3748 2.4066 1.1105 11 8 5.9468 2.4335 2.2450 12 6 8.1783 4.1954 -0.8835 13 6 8.1890 4.5761 -2.3680 14 6 9.2074 3.6988 -3.1017 15 6 8.8392 2.2255 -2.9126 16 7 8.8456 1.8992 -1.4794 17 6 8.6029 0.4664 -1.2647 18 6 9.5604 -0.3492 -2.1360 19 6 9.3072 -1.8415 -1.9129 20 6 10.2498 -2.6449 -2.7715 21 1 10.9583 -2.1413 -3.4125 22 6 10.2071 -4.0226 -2.7395 23 7 9.3439 -4.6357 -1.9592 24 14 11.3750 -5.0184 -3.8042 25 1 12.7771 -4.6943 -3.4377 26 1 11.1293 -6.4667 -3.5876 27 1 11.1474 -4.6855 -5.2335 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8568 0.6439 -0.8908 34 1 3.8574 0.6435 0.8891 35 1 3.8365 3.1227 0.8904 36 1 3.8358 3.1238 -0.8895 37 1 6.1145 3.1481 -1.9353 38 1 6.3959 1.4044 -1.6502 39 1 8.1911 1.2767 0.8615 40 1 8.4363 2.9864 1.3387 41 1 7.4107 4.7710 -0.3660 42 1 9.1524 4.4116 -0.4451 43 1 7.1978 4.4169 -2.7925 44 1 8.4666 5.6249 -2.4734 45 1 9.1982 3.9423 -4.1642 46 1 10.2025 3.8800 -2.6958 47 1 9.5658 1.6000 -3.4310 48 1 7.8456 2.0438 -3.3222 49 1 8.7697 0.2228 -0.2155 50 1 7.5740 0.2278 -1.5341 51 1 9.3936 -0.1057 -3.1853 52 1 10.5893 -0.1107 -1.8667 53 1 9.4736 -2.0854 -0.8636 54 1 8.2783 -2.0798 -2.1824 55 1 9.3141 -5.6050 -1.9364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274044051.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:25 Heat of formation + Delta-G solvation = -105.714294 kcal Electronic energy + Delta-G solvation = -31037.061933 eV Core-core repulsion = 27072.660132 eV Total energy + Delta-G solvation = -3964.401801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.43172 -39.85921 -38.97982 -37.16078 -36.35819 -34.95243 -34.76501 -32.58992 -32.08743 -29.37548 -28.55845 -28.17342 -27.10861 -25.74157 -25.59151 -23.95059 -23.00485 -22.31594 -21.49233 -20.82866 -19.47156 -18.50198 -18.15243 -17.49803 -17.27762 -16.95574 -16.71027 -16.43420 -16.39243 -16.24325 -16.01366 -15.39775 -15.22091 -15.01926 -14.82235 -14.71914 -14.46324 -14.15251 -14.02749 -13.78542 -13.51145 -13.36929 -13.33480 -13.16382 -12.87508 -12.77721 -12.74326 -12.55565 -12.44004 -12.30150 -12.13495 -12.10929 -11.96070 -11.64522 -11.51564 -11.40256 -11.28236 -11.12367 -10.94377 -10.85211 -10.68005 -10.53522 -9.88466 -9.21208 -8.19210 -6.30541 1.40221 1.42118 1.43392 1.51264 1.86740 2.41094 2.71597 2.83563 3.14104 3.30583 3.49894 3.65596 3.75142 3.83755 3.99512 4.04025 4.11034 4.16611 4.18575 4.26115 4.31237 4.37226 4.39664 4.42540 4.47072 4.50744 4.52690 4.55365 4.57967 4.62660 4.74901 4.81409 4.83203 4.84013 4.91048 4.93275 5.03730 5.05175 5.08393 5.13124 5.19724 5.23414 5.29674 5.40510 5.46314 5.52150 5.56310 5.74840 5.86335 5.95197 6.08613 6.19686 6.22453 6.27372 6.86879 7.03120 7.38983 8.92416 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007468 B = 0.003266 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3748.207852 B = 8569.868539 C =11155.780054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.067 3.933 4 C -0.135 4.135 5 C 0.131 3.869 6 N -0.608 5.608 7 C 0.070 3.930 8 C 0.114 3.886 9 C -0.155 4.155 10 C 0.516 3.484 11 O -0.575 6.575 12 C -0.095 4.095 13 C -0.116 4.116 14 C -0.112 4.112 15 C 0.044 3.956 16 N -0.517 5.517 17 C 0.058 3.942 18 C -0.091 4.091 19 C 0.026 3.974 20 C -0.541 4.541 21 H 0.062 0.938 22 C -0.002 4.002 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.267 1.267 26 H -0.285 1.285 27 H -0.265 1.265 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.038 0.962 49 H 0.066 0.934 50 H 0.029 0.971 51 H 0.060 0.940 52 H 0.055 0.945 53 H -0.013 1.013 54 H -0.013 1.013 55 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 23.244 -1.650 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.009 4.009 4 C -0.174 4.174 5 C 0.009 3.991 6 N -0.341 5.341 7 C -0.054 4.054 8 C 0.023 3.977 9 C -0.195 4.195 10 C 0.305 3.695 11 O -0.455 6.455 12 C -0.133 4.133 13 C -0.153 4.153 14 C -0.149 4.149 15 C -0.083 4.083 16 N -0.240 5.240 17 C -0.069 4.069 18 C -0.129 4.129 19 C -0.011 4.011 20 C -0.579 4.579 21 H 0.080 0.920 22 C -0.200 4.200 23 N -0.575 5.575 24 Si 0.789 3.211 25 H -0.191 1.191 26 H -0.211 1.211 27 H -0.189 1.189 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.056 0.944 49 H 0.084 0.916 50 H 0.047 0.953 51 H 0.078 0.922 52 H 0.074 0.926 53 H 0.005 0.995 54 H 0.005 0.995 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.839 23.061 -0.857 25.937 hybrid contribution -0.578 -1.607 -0.319 1.738 sum -12.417 21.454 -1.177 24.817 Atomic orbital electron populations 1.22925 0.79197 1.03700 1.01169 1.87874 1.21861 1.29255 1.95674 1.22458 0.92140 0.84516 1.01824 1.21859 0.94958 0.98492 1.02045 1.21377 0.77170 0.95630 1.04913 1.48343 1.06907 1.71820 1.06999 1.23046 0.91750 1.02838 0.87759 1.21360 0.88423 0.96173 0.91757 1.22606 0.93442 1.05668 0.97736 1.21252 0.90048 0.74137 0.84073 1.90679 1.79371 1.52740 1.22713 1.21455 1.03021 0.90435 0.98355 1.21641 0.99601 1.00356 0.93751 1.21581 0.99923 0.92267 1.01167 1.22325 1.00611 0.98316 0.87076 1.61853 1.47960 1.03390 1.10807 1.22193 0.97430 0.87175 1.00086 1.21475 0.98601 0.94093 0.98685 1.18957 0.94946 0.92294 0.94932 1.21659 1.19375 0.91975 1.24843 0.91969 1.26003 0.97453 0.99470 0.97037 1.70107 1.37788 1.09267 1.40367 0.85511 0.79239 0.77072 0.79306 1.19142 1.21079 1.18933 0.92966 0.92489 0.89164 0.92110 0.90641 0.91835 0.94000 0.89831 0.86596 0.87232 0.92004 0.87963 0.86350 0.90592 0.90247 0.91279 0.89693 0.89967 0.91381 0.90663 0.94414 0.91587 0.95298 0.92163 0.92648 0.99502 0.99471 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.43 -10.09 10.70 -148.98 -1.59 -11.68 16 3 C 0.07 1.22 5.94 71.98 0.43 1.65 16 4 C -0.13 -3.01 5.91 30.60 0.18 -2.83 16 5 C 0.13 2.37 5.94 86.38 0.51 2.88 16 6 N -0.61 -13.70 2.94 -818.54 -2.41 -16.11 16 7 C 0.07 1.40 5.08 86.59 0.44 1.84 16 8 C 0.11 2.38 0.60 4.06 0.00 2.38 16 9 C -0.15 -3.84 5.87 30.41 0.18 -3.67 16 10 C 0.52 14.65 8.03 87.93 0.71 15.36 16 11 O -0.57 -20.70 17.60 -3.03 -0.05 -20.75 16 12 C -0.09 -1.46 4.76 30.43 0.14 -1.31 16 13 C -0.12 -1.42 5.80 30.72 0.18 -1.24 16 14 C -0.11 -1.73 6.07 30.65 0.19 -1.55 16 15 C 0.04 0.96 4.78 86.30 0.41 1.37 16 16 N -0.52 -12.98 4.61 -846.53 -3.91 -16.89 16 17 C 0.06 1.92 4.41 86.30 0.38 2.30 16 18 C -0.09 -3.62 4.62 30.60 0.14 -3.48 16 19 C 0.03 1.40 4.97 29.85 0.15 1.54 16 20 C -0.54 -30.85 9.11 25.60 0.23 -30.61 16 21 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 22 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 23 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 24 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.56 7.93 -2.39 -0.02 1.54 16 36 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 1.59 6.20 -2.39 -0.01 1.57 16 38 H 0.06 1.51 5.61 -2.39 -0.01 1.49 16 39 H 0.10 2.93 5.39 -2.39 -0.01 2.92 16 40 H 0.12 2.61 7.88 -2.39 -0.02 2.59 16 41 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 0.74 6.54 -2.39 -0.02 0.73 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.08 1.90 5.91 -2.39 -0.01 1.89 16 48 H 0.04 0.80 7.20 -2.39 -0.02 0.78 16 49 H 0.07 2.31 5.94 -2.39 -0.01 2.29 16 50 H 0.03 0.99 5.86 -2.39 -0.01 0.97 16 51 H 0.06 2.28 6.21 -2.39 -0.01 2.27 16 52 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 53 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 54 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 55 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -74.16 415.34 1.18 -72.98 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.85 Total: 16.96 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 5.98 Total: -13.38 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -6.03 Total: -90.66 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.65 Total: -32.44 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -74.16 1.18 -72.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274044051.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.734 kcal (2) G-P(sol) polarization free energy of solvation -74.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds