Wall clock time and date at job start Tue Mar 31 2020 22:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00326 * 2 1 4 4 H 1.09001 * 109.47198 * 6.29491 * 3 2 1 5 5 C 1.50700 * 109.47225 * 246.29604 * 3 2 1 6 6 O 1.21286 * 119.99832 * 346.84644 * 5 3 2 7 7 N 1.34778 * 120.00312 * 166.84283 * 5 3 2 8 8 C 1.47426 * 125.64365 * 6.82989 * 7 5 3 9 9 C 1.54910 * 104.83038 * 155.90474 * 8 7 5 10 10 C 1.55407 * 101.66622 * 36.92216 * 9 8 7 11 11 C 1.47014 * 125.65041 * 186.86805 * 7 5 3 12 12 H 1.08999 * 109.88543 * 300.59498 * 11 7 5 13 13 C 1.52998 * 109.88506 * 61.60579 * 11 7 5 14 14 N 1.46501 * 109.47356 * 304.92356 * 13 11 7 15 15 C 1.46505 * 119.99422 * 276.86101 * 14 13 11 16 16 C 1.36930 * 120.00379 * 96.85534 * 14 13 11 17 17 H 1.08003 * 120.00206 * 229.67380 * 16 14 13 18 18 C 1.38816 * 119.99959 * 49.68118 * 16 14 13 19 19 N 1.31613 * 120.00260 * 176.23108 * 18 16 14 20 20 Si 1.86802 * 119.99741 * 356.23135 * 18 16 14 21 21 H 1.48505 * 109.47108 * 274.88679 * 20 18 16 22 22 H 1.48505 * 109.47377 * 34.88245 * 20 18 16 23 23 H 1.48502 * 109.47206 * 154.88606 * 20 18 16 24 24 C 1.52997 * 109.47296 * 126.29646 * 3 2 1 25 25 C 1.52995 * 109.47139 * 58.10766 * 24 3 2 26 26 C 1.53006 * 109.47320 * 179.97438 * 25 24 3 27 27 C 1.53000 * 109.46872 * 60.00019 * 26 25 24 28 28 C 1.53009 * 109.47265 * 300.00153 * 27 26 25 29 29 C 1.53000 * 109.46978 * 298.10831 * 24 3 2 30 30 H 1.09001 * 109.47101 * 312.81790 * 1 2 3 31 31 H 1.09000 * 109.46658 * 72.80916 * 1 2 3 32 32 H 1.08993 * 109.47411 * 192.80673 * 1 2 3 33 33 H 1.08998 * 110.36536 * 274.74100 * 8 7 5 34 34 H 1.08993 * 110.37050 * 36.95582 * 8 7 5 35 35 H 1.09000 * 111.00776 * 155.07726 * 9 8 7 36 36 H 1.08997 * 111.00599 * 278.89659 * 9 8 7 37 37 H 1.09004 * 110.85160 * 206.29797 * 10 9 8 38 38 H 1.08997 * 110.69516 * 82.94943 * 10 9 8 39 39 H 1.08996 * 109.47557 * 184.91473 * 13 11 7 40 40 H 1.09009 * 109.46508 * 64.91838 * 13 11 7 41 41 H 1.08996 * 109.46970 * 274.09434 * 15 14 13 42 42 H 1.09001 * 109.47246 * 34.09281 * 15 14 13 43 43 H 1.08995 * 109.47184 * 154.09084 * 15 14 13 44 44 H 0.96999 * 120.00152 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.47137 * 178.11562 * 24 3 2 46 46 H 1.08992 * 109.47500 * 300.00135 * 25 24 3 47 47 H 1.08997 * 109.47174 * 60.00495 * 25 24 3 48 48 H 1.09002 * 109.46849 * 300.00373 * 26 25 24 49 49 H 1.08993 * 109.47106 * 180.02562 * 26 25 24 50 50 H 1.09000 * 109.46974 * 180.02562 * 27 26 25 51 51 H 1.09003 * 109.47061 * 59.99950 * 27 26 25 52 52 H 1.08993 * 109.46952 * 299.99730 * 28 27 26 53 53 H 1.08997 * 109.46886 * 179.97438 * 28 27 26 54 54 H 1.09001 * 109.47113 * 300.00092 * 29 24 3 55 55 H 1.09002 * 109.47094 * 60.00347 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2250 2.0528 0.1127 5 6 2.7364 1.5319 -1.3009 6 8 2.9615 0.5974 -2.0405 7 7 3.1357 2.7730 -1.6426 8 6 3.0563 3.9682 -0.7831 9 6 4.1446 4.9243 -1.3320 10 6 4.0475 4.6661 -2.8614 11 6 3.7217 3.1594 -2.9344 12 1 4.6347 2.5910 -3.1121 13 6 2.7189 2.8978 -4.0599 14 7 2.2898 1.4977 -4.0160 15 6 3.1112 0.4599 -4.6444 16 6 1.1213 1.1589 -3.3878 17 1 1.1089 0.3542 -2.6676 18 6 -0.0476 1.8498 -3.6767 19 7 -1.1849 1.4769 -3.1292 20 14 -0.0063 3.3087 -4.8425 21 1 0.3606 4.5345 -4.0888 22 1 0.9991 3.0631 -5.9075 23 1 -1.3457 3.4885 -5.4582 24 6 2.9978 1.4239 1.1626 25 6 4.0738 0.3444 1.0299 26 6 5.0618 0.4634 2.1921 27 6 4.3164 0.2805 3.5157 28 6 3.2403 1.3601 3.6485 29 6 2.2520 1.2407 2.4859 30 1 -0.3633 0.6985 0.7538 31 1 -0.3633 0.3037 -0.9818 32 1 -0.3634 -1.0020 0.2278 33 1 2.0715 4.4284 -0.8634 34 1 3.2679 3.7049 0.2532 35 1 3.9090 5.9617 -1.0947 36 1 5.1300 4.6531 -0.9533 37 1 4.9971 4.8797 -3.3520 38 1 3.2435 5.2561 -3.3013 39 1 3.1896 3.1037 -5.0212 40 1 1.8527 3.5473 -3.9329 41 1 2.8533 0.3824 -5.7005 42 1 4.1648 0.7213 -4.5459 43 1 2.9267 -0.4959 -4.1541 44 1 -2.0016 1.9599 -3.3308 45 1 3.4660 2.4081 1.1427 46 1 3.6057 -0.6396 1.0498 47 1 4.6052 0.4750 0.0872 48 1 5.5299 1.4475 2.1717 49 1 5.8285 -0.3054 2.0973 50 1 5.0201 0.3657 4.3437 51 1 3.8482 -0.7036 3.5361 52 1 3.7085 2.3442 3.6281 53 1 2.7090 1.2296 4.5912 54 1 1.4854 2.0098 2.5804 55 1 1.7838 0.2566 2.5058 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275177223.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:10 Heat of formation + Delta-G solvation = -54.897044 kcal Electronic energy + Delta-G solvation = -34276.976411 eV Core-core repulsion = 30314.778211 eV Total energy + Delta-G solvation = -3962.198200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49209 -39.78442 -38.25174 -37.41279 -36.98707 -33.68344 -33.20036 -31.88188 -31.60517 -31.04324 -28.23013 -28.02470 -26.70230 -26.56085 -24.10013 -23.43411 -22.84245 -22.20811 -21.79244 -20.62407 -19.90241 -18.89458 -17.97249 -17.42283 -17.18691 -17.05152 -16.62559 -16.02410 -15.72939 -15.53147 -15.14838 -15.04310 -14.98008 -14.89497 -14.52086 -14.28665 -14.21996 -13.98088 -13.91775 -13.55467 -13.34129 -13.31170 -13.21125 -13.02354 -12.83640 -12.72129 -12.58794 -12.37362 -12.23445 -12.10900 -11.92989 -11.86128 -11.74046 -11.72684 -11.44986 -11.28128 -11.22254 -11.09286 -11.05470 -10.75612 -10.57134 -9.79654 -9.21843 -8.22200 -7.92911 -5.52080 1.22822 1.36781 1.45381 2.10394 2.34878 2.48934 3.06804 3.26010 3.47658 3.66491 3.68141 3.75626 3.87684 3.91922 4.04988 4.11764 4.21793 4.27422 4.38462 4.42723 4.44763 4.46218 4.51307 4.52772 4.61180 4.66947 4.67739 4.70921 4.74102 4.76988 4.79181 4.85399 4.93823 4.97032 5.06775 5.09660 5.12979 5.16787 5.18539 5.20423 5.26971 5.31313 5.32954 5.35479 5.40523 5.41472 5.47107 5.64880 5.79810 6.17489 6.25831 6.60704 7.03315 7.19747 7.80686 7.85971 8.31805 9.16625 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.005395 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.970214 B = 5188.322835 C = 6000.155672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.092 3.908 4 H 0.063 0.937 5 C 0.525 3.475 6 O -0.516 6.516 7 N -0.616 5.616 8 C 0.084 3.916 9 C -0.113 4.113 10 C -0.124 4.124 11 C 0.119 3.881 12 H 0.056 0.944 13 C 0.118 3.882 14 N -0.611 5.611 15 C 0.163 3.837 16 C -0.216 4.216 17 H 0.059 0.941 18 C -0.026 4.026 19 N -0.950 5.950 20 Si 0.947 3.053 21 H -0.275 1.275 22 H -0.271 1.271 23 H -0.322 1.322 24 C -0.078 4.078 25 C -0.100 4.100 26 C -0.111 4.111 27 C -0.117 4.117 28 C -0.110 4.110 29 C -0.110 4.110 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.036 0.964 41 H -0.004 1.004 42 H 0.035 0.965 43 H 0.023 0.977 44 H 0.253 0.747 45 H 0.098 0.902 46 H 0.045 0.955 47 H 0.033 0.967 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.079 0.921 51 H 0.051 0.949 52 H 0.074 0.926 53 H 0.074 0.926 54 H 0.065 0.935 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.987 8.369 13.583 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C 0.030 3.970 4 H 0.081 0.919 5 C 0.313 3.687 6 O -0.389 6.389 7 N -0.354 5.354 8 C -0.039 4.039 9 C -0.151 4.151 10 C -0.162 4.162 11 C 0.013 3.987 12 H 0.074 0.926 13 C -0.008 4.008 14 N -0.335 5.335 15 C 0.018 3.982 16 C -0.346 4.346 17 H 0.076 0.924 18 C -0.220 4.220 19 N -0.597 5.597 20 Si 0.779 3.221 21 H -0.202 1.202 22 H -0.196 1.196 23 H -0.252 1.252 24 C -0.097 4.097 25 C -0.138 4.138 26 C -0.148 4.148 27 C -0.154 4.154 28 C -0.148 4.148 29 C -0.148 4.148 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.014 0.986 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.116 0.884 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.097 0.903 51 H 0.070 0.930 52 H 0.093 0.907 53 H 0.093 0.907 54 H 0.084 0.916 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.034 7.558 13.193 20.027 hybrid contribution -1.250 0.435 -1.223 1.802 sum 11.783 7.993 11.970 18.602 Atomic orbital electron populations 1.22931 0.80276 1.02173 1.01215 1.87833 1.20222 1.26231 1.94578 1.21998 0.95809 0.85972 0.93175 0.91907 1.20304 0.79159 0.81776 0.87444 1.90651 1.53760 1.42442 1.52005 1.48289 1.64098 1.07631 1.15383 1.22638 0.99489 0.86123 0.95625 1.22758 0.98693 0.99935 0.93704 1.22736 1.03026 0.92188 0.98278 1.22182 0.95428 0.96155 0.84959 0.92626 1.21765 0.95784 0.86702 0.96573 1.43856 1.23489 1.01821 1.64347 1.20639 0.92973 0.91798 0.92774 1.18966 0.83582 1.15859 1.16239 0.92369 1.26275 0.94992 1.01760 0.99009 1.69831 0.98592 1.42456 1.48772 0.85884 0.74328 0.81146 0.80700 1.20197 1.19598 1.25169 1.21486 0.94833 1.00405 0.92942 1.21327 0.96158 0.98381 0.97903 1.21501 0.97099 1.02221 0.94002 1.21537 0.97966 0.98927 0.97020 1.21505 0.96277 0.99627 0.97350 1.21544 0.98126 1.01872 0.93260 0.93282 0.94041 0.89508 0.93418 0.89014 0.87567 0.89180 0.87822 0.91467 0.92963 0.94638 0.98583 0.94631 0.95822 0.93751 0.88442 0.93580 0.94819 0.91004 0.92021 0.90287 0.92989 0.90710 0.90741 0.91628 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.27 10.86 113.37 1.23 2.50 16 2 O -0.37 -16.02 8.52 -130.28 -1.11 -17.13 16 3 C 0.09 3.50 1.74 29.85 0.05 3.55 16 4 H 0.06 2.46 7.37 -2.39 -0.02 2.45 16 5 C 0.53 22.59 3.65 87.66 0.32 22.91 16 6 O -0.52 -26.48 10.16 15.65 0.16 -26.32 16 7 N -0.62 -22.56 3.06 -788.08 -2.41 -24.98 16 8 C 0.08 2.22 6.52 86.85 0.57 2.79 16 9 C -0.11 -2.15 7.09 32.07 0.23 -1.92 16 10 C -0.12 -2.98 6.50 31.87 0.21 -2.77 16 11 C 0.12 4.17 3.31 45.34 0.15 4.32 16 12 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 13 C 0.12 5.07 3.51 86.38 0.30 5.37 16 14 N -0.61 -31.11 1.25 -726.93 -0.91 -32.02 16 15 C 0.16 7.75 9.36 127.77 1.20 8.94 16 16 C -0.22 -12.57 6.92 84.04 0.58 -11.99 16 17 H 0.06 3.88 5.63 -2.91 -0.02 3.87 16 18 C -0.03 -1.53 5.50 84.86 0.47 -1.06 16 19 N -0.95 -58.74 13.26 21.65 0.29 -58.45 16 20 Si 0.95 48.26 24.62 68.60 1.69 49.95 16 21 H -0.27 -13.03 6.76 99.48 0.67 -12.36 16 22 H -0.27 -13.50 6.73 99.48 0.67 -12.83 16 23 H -0.32 -16.89 7.11 99.48 0.71 -16.18 16 24 C -0.08 -2.19 1.93 -10.80 -0.02 -2.21 16 25 C -0.10 -2.96 4.82 30.59 0.15 -2.81 16 26 C -0.11 -2.34 5.92 30.60 0.18 -2.16 16 27 C -0.12 -2.11 5.92 30.60 0.18 -1.93 16 28 C -0.11 -1.90 5.93 30.62 0.18 -1.72 16 29 C -0.11 -2.59 5.08 30.61 0.16 -2.43 16 30 H 0.05 1.76 7.88 -2.39 -0.02 1.74 16 31 H 0.04 2.16 6.81 -2.39 -0.02 2.14 16 32 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 2.02 5.07 -2.39 -0.01 2.01 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 1.71 7.77 -2.39 -0.02 1.69 16 39 H 0.05 2.08 8.12 -2.39 -0.02 2.06 16 40 H 0.04 1.66 3.13 -2.38 -0.01 1.65 16 41 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.04 1.50 8.10 -2.39 -0.02 1.48 16 43 H 0.02 1.21 7.45 -2.39 -0.02 1.19 16 44 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.10 2.34 5.27 -2.38 -0.01 2.33 16 46 H 0.05 1.59 7.63 -2.39 -0.02 1.57 16 47 H 0.03 1.16 7.27 -2.39 -0.02 1.15 16 48 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 54 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 55 H 0.05 1.46 7.73 -2.39 -0.02 1.44 16 Total: -1.00 -74.99 393.56 4.61 -70.38 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.78 Total: 19.18 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 6.13 Total: 19.38 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -3.03 Total: -115.44 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.95 Total: -43.45 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.69 Total: 49.95 kcal Total: -74.99 4.61 -70.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275177223.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.484 kcal (2) G-P(sol) polarization free energy of solvation -74.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds