Wall clock time and date at job start Tue Mar 31 2020 22:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00215 * 2 1 4 4 H 1.09001 * 109.46782 * 22.49305 * 3 2 1 5 5 C 1.50693 * 109.47486 * 142.49140 * 3 2 1 6 6 O 1.21285 * 120.00418 * 211.66245 * 5 3 2 7 7 N 1.34781 * 120.00275 * 31.66348 * 5 3 2 8 8 C 1.47426 * 125.64150 * 6.35194 * 7 5 3 9 9 C 1.54915 * 104.82981 * 155.91109 * 8 7 5 10 10 C 1.55156 * 101.57993 * 37.00593 * 9 8 7 11 11 C 1.47015 * 125.65025 * 186.39279 * 7 5 3 12 12 H 1.08998 * 109.88775 * 300.59416 * 11 7 5 13 13 C 1.52994 * 109.88248 * 61.60970 * 11 7 5 14 14 N 1.46501 * 109.46997 * 305.72912 * 13 11 7 15 15 C 1.46499 * 120.00305 * 278.52279 * 14 13 11 16 16 C 1.36940 * 119.99992 * 98.52255 * 14 13 11 17 17 H 1.07996 * 119.99728 * 335.36489 * 16 14 13 18 18 C 1.38807 * 119.99927 * 155.37014 * 16 14 13 19 19 N 1.31614 * 120.00239 * 353.97727 * 18 16 14 20 20 Si 1.86807 * 119.99899 * 173.98000 * 18 16 14 21 21 H 1.48506 * 109.46963 * 270.00024 * 20 18 16 22 22 H 1.48501 * 109.46968 * 29.99377 * 20 18 16 23 23 H 1.48497 * 109.47157 * 149.99899 * 20 18 16 24 24 C 1.52997 * 109.47182 * 262.49518 * 3 2 1 25 25 C 1.52999 * 109.47579 * 184.58545 * 24 3 2 26 26 C 1.52997 * 109.47579 * 179.97438 * 25 24 3 27 27 C 1.53001 * 109.47101 * 59.99636 * 26 25 24 28 28 C 1.53003 * 109.47278 * 300.00060 * 27 26 25 29 29 C 1.53001 * 109.47101 * 64.58182 * 24 3 2 30 30 H 1.09000 * 109.47644 * 305.57962 * 1 2 3 31 31 H 1.08999 * 109.46833 * 65.58281 * 1 2 3 32 32 H 1.09004 * 109.46956 * 185.57740 * 1 2 3 33 33 H 1.09002 * 110.36629 * 274.74253 * 8 7 5 34 34 H 1.09000 * 110.37275 * 36.95978 * 8 7 5 35 35 H 1.08995 * 111.00121 * 155.08407 * 9 8 7 36 36 H 1.09002 * 110.99876 * 278.88989 * 9 8 7 37 37 H 1.09002 * 110.71301 * 206.13835 * 10 9 8 38 38 H 1.08998 * 110.72217 * 82.86601 * 10 9 8 39 39 H 1.09003 * 109.47282 * 185.73075 * 13 11 7 40 40 H 1.09002 * 109.47678 * 65.72791 * 13 11 7 41 41 H 1.09002 * 109.47096 * 265.27721 * 15 14 13 42 42 H 1.08996 * 109.47025 * 25.27298 * 15 14 13 43 43 H 1.08994 * 109.47458 * 145.27475 * 15 14 13 44 44 H 0.97005 * 120.00276 * 179.97438 * 19 18 16 45 45 H 1.09006 * 109.46895 * 304.58413 * 24 3 2 46 46 H 1.09006 * 109.46899 * 299.99865 * 25 24 3 47 47 H 1.08995 * 109.47129 * 59.99484 * 25 24 3 48 48 H 1.09004 * 109.46742 * 300.00393 * 26 25 24 49 49 H 1.08994 * 109.47134 * 179.97438 * 26 25 24 50 50 H 1.08996 * 109.47258 * 180.02562 * 27 26 25 51 51 H 1.08996 * 109.47056 * 60.00204 * 27 26 25 52 52 H 1.08996 * 109.47195 * 300.00060 * 28 27 26 53 53 H 1.08998 * 109.46862 * 179.97438 * 28 27 26 54 54 H 1.09002 * 109.47263 * 300.00118 * 29 24 3 55 55 H 1.08996 * 109.47056 * 60.00204 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2906 2.0235 0.3932 5 6 3.2442 1.3059 0.8650 6 8 3.5610 2.3088 1.4691 7 7 3.9958 0.1919 0.9676 8 6 3.8052 -1.0474 0.1923 9 6 5.1939 -1.7340 0.1942 10 6 5.7020 -1.4048 1.6228 11 6 5.1410 0.0112 1.8715 12 1 5.9050 0.7582 1.6561 13 6 4.6820 0.1408 3.3252 14 7 3.9813 1.4149 3.5042 15 6 4.7448 2.6489 3.7056 16 6 2.6126 1.4524 3.4832 17 1 2.0593 0.6851 2.9621 18 6 1.9363 2.4765 4.1317 19 7 2.6017 3.3436 4.8649 20 14 0.0817 2.6241 3.9638 21 1 -0.2429 3.4838 2.7972 22 1 -0.5061 1.2752 3.7632 23 1 -0.4804 3.2305 5.1973 24 6 2.3898 1.6947 -1.4301 25 6 3.1150 3.0418 -1.4167 26 6 3.4952 3.4308 -2.8467 27 6 2.2292 3.5415 -3.6987 28 6 1.5040 2.1944 -3.7123 29 6 1.1235 1.8056 -2.2816 30 1 -0.3634 0.5979 0.8358 31 1 -0.3633 0.4248 -0.9358 32 1 -0.3633 -1.0228 0.0999 33 1 3.0655 -1.6865 0.6745 34 1 3.4970 -0.8139 -0.8268 35 1 5.0977 -2.8103 0.0520 36 1 5.8459 -1.2986 -0.5631 37 1 6.7916 -1.3986 1.6525 38 1 5.2994 -2.1121 2.3478 39 1 5.5494 0.1075 3.9845 40 1 4.0089 -0.6813 3.5685 41 1 4.8422 2.8456 4.7733 42 1 5.7354 2.5392 3.2646 43 1 4.2248 3.4798 3.2290 44 1 2.1292 4.0596 5.3178 45 1 3.0458 0.9331 -1.8520 46 1 2.4591 3.8034 -0.9948 47 1 4.0171 2.9628 -0.8100 48 1 4.1512 2.6691 -3.2682 49 1 4.0114 4.3907 -2.8371 50 1 2.5000 3.8182 -4.7176 51 1 1.5731 4.3031 -3.2773 52 1 2.1601 1.4328 -4.1337 53 1 0.6019 2.2735 -4.3189 54 1 0.6068 0.8459 -2.2913 55 1 0.4676 2.5671 -1.8598 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275177228.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:18 Heat of formation + Delta-G solvation = -60.262626 kcal Electronic energy + Delta-G solvation = -34142.031076 eV Core-core repulsion = 30179.600207 eV Total energy + Delta-G solvation = -3962.430869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.47692 -39.81292 -38.08741 -37.88787 -36.85676 -33.39559 -32.84795 -32.03490 -31.65966 -30.54143 -28.63428 -27.86688 -26.61343 -26.30009 -24.14221 -23.54734 -22.85925 -22.10446 -21.74184 -20.72244 -19.65914 -18.78701 -18.14486 -17.38807 -17.04732 -16.85283 -16.76626 -16.09187 -15.55308 -15.49782 -15.28281 -15.08145 -14.97363 -14.91957 -14.65193 -14.24610 -14.05257 -13.69367 -13.49057 -13.40305 -13.33927 -13.09831 -13.00128 -12.92506 -12.78885 -12.71947 -12.40987 -12.33010 -12.29968 -12.07900 -12.06173 -11.91135 -11.83998 -11.67962 -11.58797 -11.54213 -11.46662 -11.28600 -11.12605 -10.64726 -10.49164 -9.92594 -9.31058 -8.27161 -7.65189 -5.10274 1.32003 1.34339 1.41480 2.07124 2.48367 2.53332 2.73847 3.47518 3.62180 3.72291 3.72663 3.79779 3.87669 4.02390 4.11482 4.17323 4.26362 4.29869 4.36335 4.39786 4.43377 4.48379 4.51584 4.57199 4.58183 4.62636 4.65250 4.74684 4.76797 4.82474 4.84253 4.94728 4.98985 5.03185 5.07027 5.11541 5.14669 5.19951 5.21539 5.22869 5.25947 5.33903 5.35379 5.41839 5.51303 5.54006 5.54702 5.68765 5.79164 5.98570 6.07404 6.47127 7.07775 7.30912 7.84128 8.04997 8.50118 9.37814 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009551 B = 0.006087 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.009812 B = 4599.131921 C = 5764.391060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.373 6.373 3 C 0.091 3.909 4 H 0.053 0.947 5 C 0.525 3.475 6 O -0.507 6.507 7 N -0.608 5.608 8 C 0.115 3.885 9 C -0.120 4.120 10 C -0.115 4.115 11 C 0.116 3.884 12 H 0.039 0.961 13 C 0.139 3.861 14 N -0.596 5.596 15 C 0.215 3.785 16 C -0.183 4.183 17 H 0.049 0.951 18 C -0.060 4.060 19 N -0.947 5.947 20 Si 0.936 3.064 21 H -0.295 1.295 22 H -0.266 1.266 23 H -0.296 1.296 24 C -0.082 4.082 25 C -0.111 4.111 26 C -0.110 4.110 27 C -0.119 4.119 28 C -0.110 4.110 29 C -0.115 4.115 30 H 0.016 0.984 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.045 0.955 41 H -0.014 1.014 42 H -0.002 1.002 43 H 0.018 0.982 44 H 0.237 0.763 45 H 0.087 0.913 46 H 0.040 0.960 47 H 0.039 0.961 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.052 0.948 52 H 0.072 0.928 53 H 0.077 0.923 54 H 0.081 0.919 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 -10.852 -20.154 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.292 6.292 3 C 0.030 3.970 4 H 0.071 0.929 5 C 0.312 3.688 6 O -0.380 6.380 7 N -0.345 5.345 8 C -0.007 4.007 9 C -0.158 4.158 10 C -0.153 4.153 11 C 0.010 3.990 12 H 0.058 0.942 13 C 0.012 3.988 14 N -0.318 5.318 15 C 0.070 3.930 16 C -0.314 4.314 17 H 0.067 0.933 18 C -0.252 4.252 19 N -0.598 5.598 20 Si 0.767 3.233 21 H -0.223 1.223 22 H -0.191 1.191 23 H -0.223 1.223 24 C -0.101 4.101 25 C -0.149 4.149 26 C -0.147 4.147 27 C -0.156 4.156 28 C -0.147 4.147 29 C -0.152 4.152 30 H 0.035 0.965 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.005 0.995 42 H 0.017 0.983 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.089 0.911 49 H 0.078 0.922 50 H 0.098 0.902 51 H 0.071 0.929 52 H 0.091 0.909 53 H 0.096 0.904 54 H 0.099 0.901 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.228 -10.260 -19.725 22.268 hybrid contribution -1.380 1.188 0.931 2.045 sum -0.153 -9.072 -18.794 20.870 Atomic orbital electron populations 1.23153 0.80337 1.03886 1.00384 1.87915 1.20632 1.25599 1.95050 1.22325 0.92895 0.85795 0.96032 0.92923 1.19928 0.84351 0.83140 0.81416 1.90870 1.70784 1.33930 1.42439 1.48214 1.31540 1.13901 1.40817 1.22252 0.97628 0.85039 0.95800 1.22781 0.94880 1.01899 0.96251 1.22607 1.01500 0.93203 0.98030 1.22260 0.87731 0.97606 0.91387 0.94242 1.21343 0.95323 0.87861 0.94274 1.43793 1.02141 1.02036 1.83841 1.20087 0.89899 0.88605 0.94457 1.18889 0.82735 1.07634 1.22108 0.93317 1.25487 1.00170 1.00122 0.99441 1.70206 1.34148 1.18711 1.36692 0.85682 0.83348 0.77853 0.76420 1.22255 1.19110 1.22325 1.21448 0.98810 0.97542 0.92289 1.21473 0.99235 0.96217 0.97965 1.21472 0.98320 1.01433 0.93492 1.21560 0.96205 0.97758 1.00088 1.21500 1.00905 0.97142 0.95177 1.21730 0.95676 1.01905 0.95911 0.96518 0.91357 0.87335 0.92504 0.90502 0.87582 0.90448 0.88812 0.90146 0.93814 0.93666 0.99540 0.98331 0.96340 0.95355 0.89497 0.94130 0.94263 0.91095 0.92159 0.90234 0.92910 0.90891 0.90395 0.90077 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.45 113.37 1.18 1.66 16 2 O -0.37 -11.59 7.27 -148.98 -1.08 -12.67 16 3 C 0.09 3.24 1.99 29.84 0.06 3.30 16 4 H 0.05 2.21 7.63 -2.39 -0.02 2.19 16 5 C 0.53 22.28 3.43 87.65 0.30 22.58 16 6 O -0.51 -26.69 10.14 -3.04 -0.03 -26.72 16 7 N -0.61 -22.06 3.06 -788.06 -2.41 -24.47 16 8 C 0.12 3.05 5.30 86.86 0.46 3.51 16 9 C -0.12 -2.32 7.09 31.99 0.23 -2.10 16 10 C -0.11 -2.69 6.48 31.78 0.21 -2.48 16 11 C 0.12 4.12 3.31 45.34 0.15 4.27 16 12 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 13 C 0.14 6.01 5.31 86.38 0.46 6.47 16 14 N -0.60 -32.41 1.69 -726.96 -1.23 -33.63 16 15 C 0.21 12.30 7.68 127.77 0.98 13.29 16 16 C -0.18 -10.64 6.08 84.03 0.51 -10.13 16 17 H 0.05 2.86 7.13 -2.91 -0.02 2.84 16 18 C -0.06 -3.67 5.23 84.86 0.44 -3.23 16 19 N -0.95 -61.78 10.45 21.65 0.23 -61.55 16 20 Si 0.94 49.02 29.56 68.60 2.03 51.05 16 21 H -0.29 -15.39 7.11 99.48 0.71 -14.68 16 22 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.30 -15.58 7.11 99.48 0.71 -14.88 16 24 C -0.08 -2.27 1.96 -10.79 -0.02 -2.29 16 25 C -0.11 -3.42 4.74 30.59 0.15 -3.27 16 26 C -0.11 -2.49 5.92 30.59 0.18 -2.31 16 27 C -0.12 -2.20 5.92 30.60 0.18 -2.02 16 28 C -0.11 -1.85 5.93 30.62 0.18 -1.67 16 29 C -0.11 -2.51 4.35 30.61 0.13 -2.37 16 30 H 0.02 0.51 7.97 -2.39 -0.02 0.49 16 31 H 0.07 1.42 5.50 -2.39 -0.01 1.41 16 32 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.06 1.58 7.80 -2.39 -0.02 1.56 16 34 H 0.08 1.88 6.17 -2.39 -0.01 1.87 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 1.81 7.75 -2.39 -0.02 1.79 16 39 H 0.04 1.79 8.13 -2.39 -0.02 1.77 16 40 H 0.04 1.96 7.84 -2.39 -0.02 1.94 16 41 H -0.01 -0.84 7.37 -2.39 -0.02 -0.86 16 42 H 0.00 -0.09 8.04 -2.39 -0.02 -0.11 16 43 H 0.02 1.16 6.19 -2.39 -0.01 1.14 16 44 H 0.24 15.19 8.31 -92.70 -0.77 14.42 16 45 H 0.09 2.24 6.96 -2.38 -0.02 2.22 16 46 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 47 H 0.04 1.45 6.62 -2.39 -0.02 1.43 16 48 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 49 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.08 1.57 5.82 -2.39 -0.01 1.56 16 55 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -77.05 395.73 4.13 -72.93 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.84 Total: 11.87 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 5.78 Total: 23.21 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -3.41 Total: -119.66 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.11 Total: -39.39 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.03 Total: 51.05 kcal Total: -77.05 4.13 -72.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275177228.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.663 kcal (2) G-P(sol) polarization free energy of solvation -77.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds