Wall clock time and date at job start Tue Mar 31 2020 22:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99769 * 2 1 4 4 C 1.50702 * 120.00057 * 179.97438 * 2 1 3 5 5 H 1.08998 * 109.47001 * 5.00401 * 4 2 1 6 6 C 1.53004 * 109.46928 * 245.00130 * 4 2 1 7 7 C 1.50703 * 109.46998 * 175.00159 * 6 4 2 8 8 O 1.21287 * 119.99870 * 0.02562 * 7 6 4 9 9 N 1.34771 * 120.00024 * 179.97438 * 7 6 4 10 10 C 1.46500 * 119.99795 * 0.02562 * 9 7 6 11 11 C 1.46494 * 119.99925 * 179.97438 * 9 7 6 12 12 C 1.53001 * 109.47367 * 240.00198 * 11 9 7 13 13 C 1.52997 * 109.47144 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47385 * 59.99890 * 13 12 11 15 15 N 1.46501 * 109.46894 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00366 * 274.99838 * 15 14 13 17 17 H 1.08004 * 119.99729 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00071 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99837 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00023 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47070 * 89.99884 * 20 18 16 22 22 H 1.48497 * 109.47420 * 210.00231 * 20 18 16 23 23 H 1.48504 * 109.47252 * 330.00274 * 20 18 16 24 24 C 1.52992 * 109.47097 * 299.99966 * 14 13 12 25 25 C 1.53005 * 109.47228 * 59.99854 * 24 14 13 26 26 O 1.42896 * 109.46738 * 125.00370 * 4 2 1 27 27 C 1.42899 * 114.00138 * 269.99803 * 26 4 2 28 28 C 1.52992 * 109.47391 * 180.02562 * 27 26 4 29 29 H 1.07994 * 120.00131 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99791 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47152 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46980 * 59.99784 * 3 2 1 33 33 H 1.09004 * 109.47113 * 299.99764 * 3 2 1 34 34 H 1.08995 * 109.47032 * 294.99946 * 6 4 2 35 35 H 1.08999 * 109.47022 * 55.00091 * 6 4 2 36 36 H 1.08999 * 109.47108 * 90.00095 * 10 9 7 37 37 H 1.09005 * 109.46597 * 209.99888 * 10 9 7 38 38 H 1.08994 * 109.47158 * 329.99302 * 10 9 7 39 39 H 1.08998 * 109.47208 * 0.02562 * 11 9 7 40 40 H 1.08998 * 109.47112 * 300.00249 * 12 11 9 41 41 H 1.09000 * 109.47288 * 59.99931 * 12 11 9 42 42 H 1.08998 * 109.47519 * 299.99632 * 13 12 11 43 43 H 1.09003 * 109.47059 * 179.97438 * 13 12 11 44 44 H 1.08998 * 109.46889 * 59.99969 * 14 13 12 45 45 H 0.96999 * 119.99907 * 95.00768 * 15 14 13 46 46 H 0.96998 * 119.99961 * 180.02562 * 19 18 16 47 47 H 1.08998 * 109.47254 * 299.99780 * 24 14 13 48 48 H 1.09000 * 109.47315 * 179.97438 * 24 14 13 49 49 H 1.09003 * 109.47312 * 179.97438 * 25 24 14 50 50 H 1.08998 * 109.47063 * 59.99809 * 25 24 14 51 51 H 1.09000 * 109.47214 * 300.00117 * 27 26 4 52 52 H 1.08998 * 109.46887 * 60.00226 * 27 26 4 53 53 H 1.09007 * 109.47518 * 59.99875 * 28 27 26 54 54 H 1.09003 * 109.47202 * 179.97438 * 28 27 26 55 55 H 1.09007 * 109.47481 * 299.99878 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 1 1.3586 -2.1317 -0.0887 6 6 2.8465 -1.4414 1.3081 7 6 3.5010 -2.7977 1.3626 8 8 3.3559 -3.5784 0.4458 9 7 4.2483 -3.1429 2.4297 10 6 4.4240 -2.1997 3.5369 11 6 4.8840 -4.4616 2.4830 12 6 4.3718 -5.2258 3.7055 13 6 5.0362 -6.6028 3.7615 14 6 6.5533 -6.4333 3.8648 15 7 7.1894 -7.7519 3.9190 16 6 7.3126 -8.4041 5.1168 17 1 6.9404 -7.9465 6.0216 18 6 7.9158 -9.6532 5.1682 19 7 8.3698 -10.2106 4.0656 20 14 8.0832 -10.5431 6.8020 21 1 6.8836 -11.3880 7.0306 22 1 9.2952 -11.4008 6.7767 23 1 8.2038 -9.5480 7.8976 24 6 7.0656 -5.6692 2.6424 25 6 6.4011 -4.2921 2.5864 26 8 2.9710 -1.3316 -1.1030 27 6 2.4140 -1.8774 -2.3004 28 6 3.4684 -1.8568 -3.4089 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 3.1352 1.1060 0.0005 32 1 1.8001 1.8767 0.8900 33 1 1.8002 1.8767 -0.8900 34 1 3.6116 -0.6666 1.3557 35 1 2.1657 -1.3322 2.1523 36 1 3.6330 -2.3504 4.2715 37 1 5.3931 -2.3676 4.0067 38 1 4.3767 -1.1796 3.1560 39 1 4.6415 -5.0187 1.5781 40 1 4.6146 -4.6686 4.6103 41 1 3.2909 -5.3462 3.6321 42 1 4.7938 -7.1603 2.8568 43 1 4.6716 -7.1471 4.6327 44 1 6.7958 -5.8759 4.7696 45 1 7.5235 -8.1630 3.1064 46 1 8.7909 -11.0836 4.1015 47 1 6.8231 -6.2267 1.7377 48 1 8.1463 -5.5480 2.7162 49 1 6.7664 -3.7475 1.7157 50 1 6.6436 -3.7347 3.4911 51 1 2.0983 -2.9048 -2.1189 52 1 1.5539 -1.2815 -2.6056 53 1 4.3284 -2.4530 -3.1035 54 1 3.0437 -2.2736 -4.3221 55 1 3.7846 -0.8295 -3.5906 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275609227.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:21 Heat of formation + Delta-G solvation = -88.900581 kcal Electronic energy + Delta-G solvation = -30484.631525 eV Core-core repulsion = 26520.958820 eV Total energy + Delta-G solvation = -3963.672704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.36731 -39.85679 -38.88275 -36.70443 -36.09814 -35.09827 -32.99582 -32.37378 -31.71506 -31.02984 -29.11844 -28.20818 -27.62440 -25.85017 -24.76619 -23.67063 -23.57414 -22.39072 -20.77931 -19.99981 -19.78940 -19.08873 -18.01265 -17.72504 -17.40952 -16.86093 -16.56646 -16.37160 -15.93082 -15.49543 -15.38997 -15.14332 -15.06792 -14.77578 -14.51131 -14.24735 -14.18942 -14.01318 -13.89777 -13.46474 -13.37214 -13.23601 -13.15572 -13.11104 -13.02540 -12.82275 -12.76109 -12.56788 -12.47527 -12.37103 -12.22111 -12.07245 -11.98996 -11.94740 -11.76138 -11.63936 -11.49360 -11.13623 -10.85225 -10.72657 -10.45875 -10.06698 -9.55033 -8.99954 -7.92926 -5.21555 1.19560 1.46825 1.48881 1.57080 1.70140 2.03592 2.56921 2.79664 3.39828 3.48856 3.74066 3.84138 3.88547 3.92173 3.93353 4.09480 4.19285 4.24786 4.28835 4.34466 4.36031 4.39681 4.45290 4.48584 4.53213 4.55826 4.59060 4.63406 4.73817 4.78063 4.82548 4.83992 4.87081 4.93474 4.95268 5.02020 5.04823 5.07823 5.11722 5.16052 5.19592 5.22185 5.23402 5.26284 5.49107 5.53980 5.62471 5.64230 5.64813 5.82757 6.29332 6.33714 6.48697 7.25441 7.34436 8.11757 8.34464 9.30972 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.002080 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.098434 B =13456.735865 C =14045.768300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.154 4.154 3 C -0.110 4.110 4 C 0.138 3.862 5 H 0.053 0.947 6 C -0.125 4.125 7 C 0.507 3.493 8 O -0.581 6.581 9 N -0.609 5.609 10 C 0.064 3.936 11 C 0.146 3.854 12 C -0.105 4.105 13 C -0.123 4.123 14 C 0.175 3.825 15 N -0.741 5.741 16 C -0.234 4.234 17 H 0.078 0.922 18 C -0.082 4.082 19 N -0.973 5.973 20 Si 0.973 3.027 21 H -0.289 1.289 22 H -0.297 1.297 23 H -0.266 1.266 24 C -0.113 4.113 25 C -0.105 4.105 26 O -0.385 6.385 27 C 0.063 3.937 28 C -0.145 4.145 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.046 0.954 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.086 0.914 51 H 0.032 0.968 52 H 0.055 0.945 53 H 0.045 0.955 54 H 0.085 0.915 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.641 28.851 -6.770 33.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.155 4.155 3 C -0.167 4.167 4 C 0.080 3.920 5 H 0.071 0.929 6 C -0.164 4.164 7 C 0.297 3.703 8 O -0.461 6.461 9 N -0.341 5.341 10 C -0.077 4.077 11 C 0.042 3.958 12 C -0.144 4.144 13 C -0.164 4.164 14 C 0.067 3.933 15 N -0.380 5.380 16 C -0.366 4.366 17 H 0.096 0.904 18 C -0.274 4.274 19 N -0.624 5.624 20 Si 0.802 3.198 21 H -0.217 1.217 22 H -0.224 1.224 23 H -0.191 1.191 24 C -0.152 4.152 25 C -0.144 4.144 26 O -0.304 6.304 27 C -0.014 4.014 28 C -0.202 4.202 29 H 0.136 0.864 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.201 0.799 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.105 0.895 51 H 0.051 0.949 52 H 0.073 0.927 53 H 0.064 0.936 54 H 0.104 0.896 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.513 28.509 -7.023 33.208 hybrid contribution 0.128 -1.724 0.229 1.744 sum -15.385 26.785 -6.794 31.628 Atomic orbital electron populations 1.23918 0.94918 1.02875 0.99854 1.22236 0.95681 0.96127 1.01416 1.20731 1.00035 0.93353 1.02572 1.20834 0.90653 0.94225 0.86337 0.92874 1.21863 1.01814 0.94044 0.98677 1.21186 0.78368 0.89756 0.81023 1.90679 1.62776 1.54442 1.38203 1.48013 1.49751 1.16074 1.20288 1.22126 1.03594 0.93031 0.88981 1.20894 0.92451 0.83563 0.98847 1.21691 0.99351 0.95229 0.98162 1.22031 0.97802 0.96297 1.00291 1.20453 0.90779 0.85505 0.96571 1.42704 1.70333 1.18139 1.06802 1.19640 1.30036 0.98931 0.87979 0.90412 1.25593 1.02408 0.99035 1.00335 1.69832 1.47007 1.17552 1.28011 0.85142 0.76551 0.78416 0.79704 1.21671 1.22417 1.19090 1.21642 1.00034 0.95829 0.97689 1.21686 0.93484 0.96277 1.02972 1.87862 1.39362 1.83280 1.19927 1.22439 0.96928 0.96659 0.85341 1.21710 0.98655 1.02773 0.97097 0.86391 0.88613 0.92140 0.90023 0.91551 0.86158 0.85072 0.90976 0.89966 0.88601 0.91526 0.89897 0.92331 0.94548 0.93405 0.93164 0.79896 0.94188 0.93565 0.91954 0.91657 0.89537 0.94921 0.92671 0.93588 0.89606 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 13.95 67.78 0.95 -1.09 16 2 C -0.15 -2.07 5.05 -16.49 -0.08 -2.16 16 3 C -0.11 -1.16 9.69 71.24 0.69 -0.46 16 4 C 0.14 2.56 1.78 29.85 0.05 2.62 16 5 H 0.05 1.16 7.25 -2.39 -0.02 1.15 16 6 C -0.12 -1.94 3.79 29.85 0.11 -1.83 16 7 C 0.51 12.32 7.55 87.66 0.66 12.98 16 8 O -0.58 -19.72 14.75 10.74 0.16 -19.56 16 9 N -0.61 -12.95 2.76 -822.60 -2.27 -15.22 16 10 C 0.06 0.77 9.30 127.77 1.19 1.96 16 11 C 0.15 3.95 2.52 44.99 0.11 4.07 16 12 C -0.11 -2.87 5.20 30.59 0.16 -2.71 16 13 C -0.12 -4.49 5.50 30.59 0.17 -4.32 16 14 C 0.17 6.91 2.77 44.99 0.12 7.03 16 15 N -0.74 -38.20 5.12 -322.94 -1.65 -39.86 16 16 C -0.23 -13.10 9.93 84.03 0.83 -12.26 16 17 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 18 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 19 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 20 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 C -0.11 -3.82 5.39 30.59 0.16 -3.66 16 25 C -0.11 -2.75 5.18 30.60 0.16 -2.59 16 26 O -0.38 -8.91 9.01 -135.19 -1.22 -10.12 16 27 C 0.06 1.32 6.46 71.98 0.46 1.78 16 28 C -0.15 -2.65 10.28 71.98 0.74 -1.91 16 29 H 0.12 0.95 8.05 -2.91 -0.02 0.93 16 30 H 0.10 1.12 7.84 -2.91 -0.02 1.10 16 31 H 0.06 0.73 7.50 -2.39 -0.02 0.71 16 32 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.12 1.45 6.92 -2.39 -0.02 1.43 16 35 H 0.13 1.31 8.11 -2.39 -0.02 1.29 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.94 6.43 -2.38 -0.02 0.92 16 38 H 0.10 0.66 6.44 -2.39 -0.02 0.65 16 39 H 0.07 2.28 6.90 -2.39 -0.02 2.27 16 40 H 0.08 1.92 7.67 -2.39 -0.02 1.90 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 45 H 0.37 20.78 7.80 -92.71 -0.72 20.06 16 46 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.09 1.88 6.66 -2.39 -0.02 1.87 16 51 H 0.03 0.79 8.09 -2.39 -0.02 0.78 16 52 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 54 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 55 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -74.12 431.14 4.41 -69.71 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.11 Total: 33.89 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 6.96 Total: -6.87 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -3.64 Total: -115.76 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.06 Total: -29.69 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -74.12 4.41 -69.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275609227.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.189 kcal (2) G-P(sol) polarization free energy of solvation -74.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds