Wall clock time and date at job start Tue Mar 31 2020 22:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00183 * 2 1 4 4 C 1.50705 * 119.99606 * 179.97438 * 2 1 3 5 5 H 1.08997 * 109.47054 * 355.00275 * 4 2 1 6 6 C 1.52996 * 109.46822 * 115.00413 * 4 2 1 7 7 C 1.50703 * 109.47129 * 185.00158 * 6 4 2 8 8 O 1.21282 * 119.99712 * 359.97438 * 7 6 4 9 9 N 1.34770 * 120.00315 * 179.97438 * 7 6 4 10 10 C 1.46508 * 119.99914 * 359.97438 * 9 7 6 11 11 C 1.46501 * 120.00454 * 179.97438 * 9 7 6 12 12 C 1.53002 * 109.46817 * 305.82810 * 11 9 7 13 13 C 1.53000 * 109.47080 * 299.99299 * 12 11 9 14 14 C 1.53001 * 109.47137 * 300.00478 * 13 12 11 15 15 N 1.46503 * 109.47152 * 179.97438 * 14 13 12 16 16 C 1.36937 * 120.00310 * 84.99597 * 15 14 13 17 17 H 1.08002 * 119.99504 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00161 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00141 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99903 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47158 * 59.99605 * 20 18 16 22 22 H 1.48496 * 109.46948 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46800 * 299.99825 * 20 18 16 24 24 C 1.52996 * 109.47230 * 59.99738 * 14 13 12 25 25 C 1.52991 * 109.47551 * 185.82375 * 11 9 7 26 26 O 1.42899 * 109.47017 * 235.00351 * 4 2 1 27 27 C 1.42899 * 114.00412 * 90.00188 * 26 4 2 28 28 C 1.52999 * 109.47160 * 180.02562 * 27 26 4 29 29 H 1.08005 * 120.00259 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99573 * 359.72735 * 1 2 3 31 31 H 1.09000 * 109.46799 * 89.99858 * 3 2 1 32 32 H 1.08998 * 109.46798 * 209.99902 * 3 2 1 33 33 H 1.08998 * 109.46865 * 330.00089 * 3 2 1 34 34 H 1.09009 * 109.47137 * 304.99450 * 6 4 2 35 35 H 1.08995 * 109.47829 * 64.99721 * 6 4 2 36 36 H 1.09000 * 109.46532 * 84.08077 * 10 9 7 37 37 H 1.08998 * 109.46875 * 204.07593 * 10 9 7 38 38 H 1.08993 * 109.46982 * 324.08001 * 10 9 7 39 39 H 1.09006 * 109.46969 * 65.81856 * 11 9 7 40 40 H 1.08996 * 109.47539 * 59.99536 * 12 11 9 41 41 H 1.09003 * 109.46737 * 179.97438 * 12 11 9 42 42 H 1.08998 * 109.47510 * 180.02562 * 13 12 11 43 43 H 1.09002 * 109.47119 * 60.00080 * 13 12 11 44 44 H 1.08993 * 109.47362 * 299.99764 * 14 13 12 45 45 H 0.97002 * 119.99661 * 265.00283 * 15 14 13 46 46 H 0.97002 * 120.00200 * 180.02562 * 19 18 16 47 47 H 1.09005 * 109.47399 * 179.97438 * 24 14 13 48 48 H 1.09002 * 109.47181 * 60.00303 * 24 14 13 49 49 H 1.09003 * 109.47409 * 180.02562 * 25 11 9 50 50 H 1.09004 * 109.47133 * 300.00049 * 25 11 9 51 51 H 1.09000 * 109.47075 * 300.00202 * 27 26 4 52 52 H 1.08999 * 109.46772 * 59.99550 * 27 26 4 53 53 H 1.09001 * 109.46777 * 299.99487 * 28 27 26 54 54 H 1.08994 * 109.47239 * 60.00305 * 28 27 26 55 55 H 1.09005 * 109.46935 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 0.0006 5 1 1.3585 -2.1316 0.0905 6 6 2.8465 -1.4426 -1.3066 7 6 3.5008 -2.7991 -1.3601 8 8 3.3555 -3.5789 -0.4427 9 7 4.2473 -3.1456 -2.4273 10 6 4.4223 -2.2037 -3.5358 11 6 4.8839 -4.4641 -2.4790 12 6 5.7274 -4.6728 -1.2198 13 6 6.8047 -3.5892 -1.1421 14 6 7.7031 -3.6737 -2.3777 15 7 8.7343 -2.6357 -2.3037 16 6 9.8911 -2.8680 -1.6086 17 1 10.0433 -3.8166 -1.1153 18 6 10.8678 -1.8842 -1.5380 19 7 10.6825 -0.7284 -2.1396 20 14 12.4461 -2.2014 -0.5904 21 1 13.1524 -3.3666 -1.1809 22 1 13.3187 -1.0023 -0.6666 23 1 12.1215 -2.4873 0.8303 24 6 6.8595 -3.4650 -3.6369 25 6 5.7822 -4.5486 -3.7145 26 8 2.9708 -1.3309 1.1043 27 6 2.4138 -1.8757 2.3021 28 6 3.4678 -1.8531 3.4110 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0045 31 1 2.2452 1.6197 1.0277 32 1 3.0160 1.1746 -0.5138 33 1 1.4745 2.0647 -0.5138 34 1 2.1657 -1.3341 -2.1511 35 1 3.6117 -0.6679 -1.3551 36 1 5.2357 -1.5164 -3.3034 37 1 4.6605 -2.7541 -4.4460 38 1 3.5010 -1.6402 -3.6825 39 1 4.1164 -5.2362 -2.5343 40 1 5.0874 -4.6126 -0.3395 41 1 6.2007 -5.6540 -1.2581 42 1 7.4060 -3.7381 -0.2453 43 1 6.3312 -2.6082 -1.1037 44 1 8.1767 -4.6546 -2.4162 45 1 8.5976 -1.7838 -2.7470 46 1 11.3652 -0.0411 -2.0906 47 1 7.4997 -3.5247 -4.5172 48 1 6.3860 -2.4839 -3.5985 49 1 6.2555 -5.5298 -3.7533 50 1 5.1812 -4.3999 -4.6117 51 1 1.5536 -1.2795 2.6067 52 1 2.0979 -2.9031 2.1214 53 1 4.3281 -2.4491 3.1066 54 1 3.7831 -0.8255 3.5916 55 1 3.0427 -2.2682 4.3248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275609228.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:25 Heat of formation + Delta-G solvation = -67.203888 kcal Electronic energy + Delta-G solvation = -31842.058589 eV Core-core repulsion = 27879.326725 eV Total energy + Delta-G solvation = -3962.731865 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.67242 -39.90713 -38.67520 -36.53238 -36.11360 -34.85212 -33.07203 -32.35879 -31.94029 -30.93299 -29.45784 -28.23773 -27.34162 -25.73288 -24.87229 -23.67504 -23.54293 -22.36879 -21.11999 -19.87726 -19.58484 -19.06452 -17.89884 -17.72912 -17.13402 -16.87583 -16.72833 -16.52765 -15.86937 -15.55543 -15.32316 -15.22548 -15.08143 -14.84148 -14.57884 -14.26321 -14.07907 -13.91739 -13.78868 -13.53418 -13.43400 -13.21512 -13.11834 -13.03614 -12.84728 -12.80039 -12.76164 -12.68293 -12.49612 -12.43254 -12.19915 -12.05510 -11.98312 -11.88948 -11.74780 -11.42986 -11.31568 -11.07535 -10.89214 -10.46784 -10.35669 -10.07121 -9.45171 -8.97376 -7.94193 -5.21184 1.20407 1.44006 1.46995 1.52867 1.75965 2.14492 2.55346 2.82567 3.38060 3.49600 3.77529 3.83910 3.90552 3.93267 3.96330 4.13000 4.19799 4.28561 4.33106 4.35228 4.39557 4.41368 4.45022 4.47354 4.49744 4.62935 4.64940 4.67789 4.71814 4.75472 4.78860 4.84766 4.87275 4.91358 4.95555 5.00055 5.05722 5.07910 5.16661 5.17027 5.21564 5.25532 5.29222 5.33408 5.47707 5.56107 5.64320 5.66133 5.79837 5.82350 6.29157 6.38404 6.54374 7.32744 7.34606 8.12748 8.36097 9.28987 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.003313 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.201731 B = 8448.444441 C = 9418.273919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.159 4.159 3 C -0.112 4.112 4 C 0.141 3.859 5 H 0.064 0.936 6 C -0.131 4.131 7 C 0.510 3.490 8 O -0.567 6.567 9 N -0.605 5.605 10 C 0.061 3.939 11 C 0.157 3.843 12 C -0.130 4.130 13 C -0.107 4.107 14 C 0.176 3.824 15 N -0.736 5.736 16 C -0.239 4.239 17 H 0.066 0.934 18 C -0.074 4.074 19 N -0.967 5.967 20 Si 0.967 3.033 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.284 1.284 24 C -0.136 4.136 25 C -0.110 4.110 26 O -0.391 6.391 27 C 0.065 3.935 28 C -0.147 4.147 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.017 0.983 43 H 0.034 0.966 44 H 0.032 0.968 45 H 0.372 0.628 46 H 0.251 0.749 47 H 0.060 0.940 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.101 0.899 51 H 0.057 0.943 52 H 0.040 0.960 53 H 0.040 0.960 54 H 0.059 0.941 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.862 -1.244 -1.517 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.168 4.168 4 C 0.083 3.917 5 H 0.082 0.918 6 C -0.171 4.171 7 C 0.299 3.701 8 O -0.447 6.447 9 N -0.338 5.338 10 C -0.080 4.080 11 C 0.055 3.945 12 C -0.169 4.169 13 C -0.148 4.148 14 C 0.068 3.932 15 N -0.375 5.375 16 C -0.371 4.371 17 H 0.084 0.916 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.796 3.204 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.211 1.211 24 C -0.173 4.173 25 C -0.148 4.148 26 O -0.310 6.310 27 C -0.011 4.011 28 C -0.204 4.204 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.152 0.848 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.036 0.964 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.204 0.796 46 H 0.059 0.941 47 H 0.079 0.921 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.119 0.881 51 H 0.075 0.925 52 H 0.059 0.941 53 H 0.059 0.941 54 H 0.078 0.922 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.582 -1.690 -0.981 24.659 hybrid contribution 1.238 0.239 0.809 1.498 sum -23.344 -1.451 -0.172 23.390 Atomic orbital electron populations 1.23940 0.94431 1.03115 0.99297 1.22213 0.95901 0.95909 1.01888 1.20737 1.00062 0.94022 1.01994 1.20821 0.90521 0.94322 0.86028 0.91760 1.21886 1.01604 0.94551 0.99044 1.20870 0.78706 0.89331 0.81143 1.90599 1.62689 1.53977 1.37425 1.47938 1.49261 1.16645 1.19959 1.22324 1.02407 0.93195 0.90092 1.20976 0.93940 0.84358 0.95261 1.21897 0.96828 0.98522 0.99610 1.21854 0.96361 0.97818 0.98750 1.20424 0.88032 0.91129 0.93659 1.42595 1.16866 1.15691 1.62345 1.19523 0.94808 0.98781 1.24003 0.91559 1.25465 1.01963 0.96311 1.02851 1.69787 1.35890 1.06152 1.49935 0.85310 0.79896 0.76686 0.78500 1.20302 1.21833 1.21066 1.22207 0.97303 1.01103 0.96721 1.21787 0.96087 0.99896 0.97033 1.87936 1.39586 1.83416 1.20111 1.22427 0.96585 0.96990 0.85097 1.21722 0.98773 1.02382 0.97556 0.87863 0.86436 0.92177 0.92540 0.90278 0.84758 0.88273 0.93135 0.88076 0.88927 0.90293 0.91652 0.91239 0.96393 0.94750 0.94963 0.79596 0.94063 0.92138 0.89750 0.89711 0.88079 0.92524 0.94126 0.94113 0.92190 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 13.91 67.78 0.94 -1.44 16 2 C -0.16 -2.86 5.05 -16.49 -0.08 -2.94 16 3 C -0.11 -1.96 9.84 71.23 0.70 -1.26 16 4 C 0.14 3.23 1.86 29.85 0.06 3.29 16 5 H 0.06 1.51 7.25 -2.39 -0.02 1.49 16 6 C -0.13 -2.81 3.85 29.85 0.11 -2.69 16 7 C 0.51 14.14 7.09 87.66 0.62 14.76 16 8 O -0.57 -19.64 13.13 10.76 0.14 -19.50 16 9 N -0.61 -14.73 2.28 -822.59 -1.87 -16.60 16 10 C 0.06 1.11 8.06 127.77 1.03 2.14 16 11 C 0.16 4.02 3.05 44.99 0.14 4.15 16 12 C -0.13 -4.27 5.14 30.59 0.16 -4.11 16 13 C -0.11 -4.36 5.34 30.59 0.16 -4.19 16 14 C 0.18 7.16 2.77 44.99 0.12 7.29 16 15 N -0.74 -38.24 5.12 -322.95 -1.65 -39.89 16 16 C -0.24 -13.83 9.93 84.03 0.83 -13.00 16 17 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 18 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 19 N -0.97 -60.07 13.06 21.65 0.28 -59.79 16 20 Si 0.97 47.69 29.55 68.60 2.03 49.72 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 23 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 24 C -0.14 -4.09 4.84 30.59 0.15 -3.94 16 25 C -0.11 -2.42 4.90 30.59 0.15 -2.27 16 26 O -0.39 -11.40 9.07 -135.19 -1.23 -12.62 16 27 C 0.07 1.63 6.46 71.98 0.46 2.10 16 28 C -0.15 -3.52 10.28 71.98 0.74 -2.78 16 29 H 0.10 1.30 7.84 -2.91 -0.02 1.28 16 30 H 0.12 1.26 8.04 -2.91 -0.02 1.23 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.10 7.02 -2.39 -0.02 1.09 16 33 H 0.08 1.06 8.06 -2.39 -0.02 1.04 16 34 H 0.13 1.90 7.41 -2.38 -0.02 1.88 16 35 H 0.10 2.23 7.16 -2.39 -0.02 2.22 16 36 H 0.05 1.13 6.49 -2.39 -0.02 1.11 16 37 H 0.10 1.47 5.26 -2.39 -0.01 1.45 16 38 H 0.09 1.11 6.69 -2.39 -0.02 1.09 16 39 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.06 2.44 5.76 -2.39 -0.01 2.43 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.03 1.48 7.46 -2.39 -0.02 1.46 16 44 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 45 H 0.37 20.45 7.80 -92.71 -0.72 19.72 16 46 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 47 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 48 H 0.08 2.47 3.95 -2.39 -0.01 2.46 16 49 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.10 1.58 6.67 -2.38 -0.02 1.56 16 51 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.04 1.07 8.08 -2.39 -0.02 1.05 16 53 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 54 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 55 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -74.35 417.99 4.60 -69.75 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: 0.14 Total: 37.73 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 6.77 Total: -8.79 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -3.25 Total: -116.28 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.08 Total: -32.12 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -74.35 4.60 -69.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275609228.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.545 kcal (2) G-P(sol) polarization free energy of solvation -74.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds