Wall clock time and date at job start Tue Mar 31 2020 22:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99719 * 2 1 4 4 C 1.52997 * 109.46992 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47416 * 180.69380 * 4 3 2 6 6 C 1.50701 * 112.84946 * 294.52409 * 5 4 3 7 7 O 1.21287 * 119.99562 * 343.21592 * 6 5 4 8 8 N 1.34770 * 120.00339 * 163.23102 * 6 5 4 9 9 C 1.46501 * 120.00294 * 185.14468 * 8 6 5 10 10 C 1.53002 * 109.47211 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.44952 * 295.00448 * 10 9 8 12 12 C 1.54861 * 109.42599 * 175.06781 * 10 9 8 13 13 C 1.47033 * 110.32805 * 168.69900 * 12 10 9 14 14 C 1.52566 * 114.31469 * 62.84117 * 13 12 10 15 15 C 1.50881 * 109.34842 * 274.95519 * 14 13 12 16 16 C 1.53939 * 110.09653 * 91.88608 * 15 14 13 17 17 N 1.44583 * 109.44512 * 54.95040 * 10 9 8 18 18 C 1.36933 * 118.64419 * 30.73023 * 17 10 9 19 19 H 1.08007 * 119.99696 * 29.72578 * 18 17 10 20 20 C 1.38805 * 120.00353 * 209.72862 * 18 17 10 21 21 N 1.31626 * 119.99678 * 9.37849 * 20 18 17 22 22 Si 1.86794 * 120.00521 * 189.37597 * 20 18 17 23 23 H 1.48500 * 109.47083 * 60.00062 * 22 20 18 24 24 H 1.48506 * 109.47501 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47137 * 300.00003 * 22 20 18 26 26 C 1.53784 * 113.68653 * 65.78110 * 5 4 3 27 27 C 1.53781 * 87.07784 * 89.13152 * 26 5 4 28 28 C 1.53770 * 113.61897 * 163.31903 * 5 4 3 29 29 H 1.08997 * 109.47458 * 300.00233 * 1 2 3 30 30 H 1.08999 * 109.47321 * 60.00517 * 1 2 3 31 31 H 1.09003 * 109.47108 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47907 * 59.99777 * 3 2 1 33 33 H 1.09003 * 109.47328 * 299.99577 * 3 2 1 34 34 H 1.09003 * 109.47719 * 60.69469 * 4 3 2 35 35 H 1.09004 * 109.47122 * 300.69083 * 4 3 2 36 36 H 0.96998 * 119.99995 * 5.14512 * 8 6 5 37 37 H 1.09000 * 109.46929 * 59.99934 * 9 8 6 38 38 H 1.08999 * 109.47387 * 300.00134 * 9 8 6 39 39 H 1.09000 * 109.32999 * 288.98532 * 12 10 9 40 40 H 1.09005 * 109.33244 * 48.46629 * 12 10 9 41 41 H 1.09000 * 108.53536 * 301.58042 * 13 12 10 42 42 H 1.09001 * 108.50402 * 184.08005 * 13 12 10 43 43 H 1.08995 * 109.49207 * 154.99717 * 14 13 12 44 44 H 1.08996 * 109.49166 * 34.91577 * 14 13 12 45 45 H 1.09005 * 109.36865 * 331.69786 * 15 14 13 46 46 H 1.09003 * 109.26444 * 212.01705 * 15 14 13 47 47 H 1.09000 * 108.95253 * 198.75375 * 16 15 14 48 48 H 1.09003 * 108.87454 * 80.07758 * 16 15 14 49 49 H 0.96997 * 119.99888 * 180.02562 * 21 20 18 50 50 H 1.09005 * 113.61531 * 203.67397 * 26 5 4 51 51 H 1.09000 * 113.61754 * 334.58254 * 26 5 4 52 52 H 1.08999 * 113.61709 * 270.87796 * 27 26 5 53 53 H 1.09005 * 113.61112 * 139.98054 * 27 26 5 54 54 H 1.09009 * 113.61356 * 25.35000 * 28 5 4 55 55 H 1.08996 * 113.61707 * 156.17102 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0168 6 6 3.8699 3.3668 -1.2373 7 8 3.4814 2.7955 -2.2341 8 7 4.0444 4.7031 -1.2513 9 6 3.6584 5.4800 -2.4318 10 6 3.9586 6.9604 -2.1887 11 1 3.3278 7.3307 -1.3806 12 6 3.6671 7.7639 -3.4800 13 6 3.6872 9.2071 -3.1992 14 6 5.0368 9.7356 -2.7230 15 6 5.1526 9.5393 -1.2315 16 6 5.8231 8.1876 -0.9264 17 7 5.3490 7.1160 -1.8240 18 6 6.2638 6.2332 -2.3328 19 1 6.0957 5.7774 -3.2973 20 6 7.4071 5.9242 -1.6089 21 7 7.5265 6.3300 -0.3624 22 14 8.7761 4.9324 -2.4034 23 1 9.2897 5.6607 -3.5913 24 1 9.8784 4.7394 -1.4271 25 1 8.2491 3.6093 -2.8236 26 6 3.8806 3.3659 1.3107 27 6 5.1616 2.7306 1.8767 28 6 5.6410 2.5912 0.4222 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8576 0.6547 -0.8970 35 1 3.8565 0.6329 0.8829 36 1 4.4256 5.1505 -0.4797 37 1 2.5921 5.3517 -2.6184 38 1 4.2230 5.1317 -3.2966 39 1 4.4245 7.5312 -4.2285 40 1 2.6859 7.4854 -3.8646 41 1 2.9418 9.4214 -2.4333 42 1 3.4078 9.7403 -4.1079 43 1 5.1148 10.7973 -2.9571 44 1 5.8377 9.1924 -3.2245 45 1 4.1578 9.5579 -0.7861 46 1 5.7532 10.3445 -0.8083 47 1 5.6042 7.9085 0.1043 48 1 6.9016 8.2949 -1.0422 49 1 8.3256 6.1144 0.1433 50 1 3.9465 4.4472 1.1890 51 1 2.9729 3.0514 1.8257 52 1 4.9924 1.7756 2.3741 53 1 5.7639 3.4178 2.4711 54 1 6.1546 1.6512 0.2199 55 1 6.1885 3.4599 0.0564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276327085.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:06 Heat of formation + Delta-G solvation = -67.240183 kcal Electronic energy + Delta-G solvation = -32581.786564 eV Core-core repulsion = 28619.053125 eV Total energy + Delta-G solvation = -3962.733439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.73957 -39.91277 -38.83001 -38.42926 -36.00143 -35.20814 -33.20785 -32.45252 -32.25727 -28.95059 -27.89719 -27.31622 -26.84668 -25.88622 -25.16847 -23.93444 -23.08824 -21.89114 -21.18573 -20.76227 -19.52995 -18.44956 -17.78635 -17.45207 -17.25083 -16.88852 -16.73341 -16.23375 -16.02735 -15.96847 -15.69864 -15.49831 -15.19136 -14.98380 -14.64606 -14.32926 -14.25544 -13.69071 -13.58168 -13.47211 -13.34451 -13.24180 -13.06562 -12.86711 -12.82133 -12.70503 -12.57415 -12.39562 -12.33725 -12.11358 -12.06540 -11.99004 -11.55239 -11.39543 -11.38294 -11.30338 -11.20219 -11.18170 -10.97332 -10.61704 -10.36863 -10.31236 -9.74311 -8.49078 -7.76293 -5.22312 1.40088 1.44126 1.48254 1.73746 2.45333 2.54029 2.73681 3.39038 3.53968 3.62147 3.65940 3.75510 3.88880 4.04560 4.06738 4.09861 4.23130 4.28146 4.29719 4.43850 4.45137 4.51520 4.52432 4.55878 4.62227 4.64686 4.68216 4.76922 4.82583 4.82942 4.83753 4.94261 5.01841 5.02834 5.08302 5.09542 5.15116 5.15608 5.26514 5.27735 5.28212 5.38844 5.43865 5.51403 5.56336 5.68072 5.73144 5.78400 5.83060 5.96021 6.20768 6.51221 6.82158 7.30785 7.44742 8.03065 8.41529 9.26041 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.004220 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.394723 B = 6634.197099 C = 7841.006914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.069 3.931 4 C -0.071 4.071 5 C -0.099 4.099 6 C 0.515 3.485 7 O -0.597 6.597 8 N -0.687 5.687 9 C 0.132 3.868 10 C 0.175 3.825 11 H 0.058 0.942 12 C -0.129 4.129 13 C -0.100 4.100 14 C -0.103 4.103 15 C -0.134 4.134 16 C 0.191 3.809 17 N -0.587 5.587 18 C -0.234 4.234 19 H 0.041 0.959 20 C -0.014 4.014 21 N -0.912 5.912 22 Si 0.922 3.078 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.296 1.296 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.129 4.129 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.409 0.591 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.005 0.995 48 H 0.041 0.959 49 H 0.247 0.753 50 H 0.078 0.922 51 H 0.096 0.904 52 H 0.106 0.894 53 H 0.073 0.927 54 H 0.072 0.928 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 -1.536 5.706 13.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.008 4.008 4 C -0.109 4.109 5 C -0.103 4.103 6 C 0.303 3.697 7 O -0.480 6.480 8 N -0.336 5.336 9 C 0.007 3.993 10 C 0.067 3.933 11 H 0.076 0.924 12 C -0.169 4.169 13 C -0.137 4.137 14 C -0.141 4.141 15 C -0.172 4.172 16 C 0.066 3.934 17 N -0.309 5.309 18 C -0.365 4.365 19 H 0.058 0.942 20 C -0.211 4.211 21 N -0.558 5.558 22 Si 0.753 3.247 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.223 1.223 26 C -0.155 4.155 27 C -0.156 4.156 28 C -0.167 4.167 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.246 0.754 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.023 0.977 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.096 0.904 51 H 0.115 0.885 52 H 0.125 0.875 53 H 0.092 0.908 54 H 0.091 0.909 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.759 -2.059 5.151 13.002 hybrid contribution 1.478 -0.160 -0.740 1.661 sum -10.281 -2.219 4.412 11.405 Atomic orbital electron populations 1.22929 0.79581 1.03917 1.00637 1.87794 1.21483 1.28412 1.95572 1.22450 0.93614 0.84419 1.00272 1.20948 0.93400 0.93248 1.03321 1.22048 0.99264 0.96142 0.92805 1.20796 0.76483 0.82662 0.89801 1.90589 1.49822 1.70446 1.37138 1.45738 1.62024 1.06565 1.19287 1.21427 0.97630 0.92165 0.88036 1.20648 0.86037 0.91138 0.95453 0.92430 1.21280 1.00618 0.96591 0.98440 1.20254 0.97015 0.95332 1.01105 1.20901 0.97742 0.99471 0.95960 1.21962 1.00654 0.98088 0.96533 1.20795 0.96886 0.84927 0.90742 1.43726 1.01330 1.30420 1.55454 1.18846 1.00810 1.18373 0.98443 0.94162 1.25172 1.00546 0.99925 0.95433 1.70060 1.27900 1.50005 1.07809 0.86077 0.81360 0.79343 0.77869 1.21684 1.21655 1.22315 1.22975 1.00001 0.99167 0.93376 1.22778 0.96150 1.02070 0.94596 1.22929 0.93023 1.02370 0.98369 0.92581 0.94367 0.88014 0.91385 0.94889 0.92632 0.88310 0.75407 0.91916 0.94625 0.94249 0.91091 0.91918 0.92128 0.91936 0.94109 0.92209 0.92174 0.97733 0.94034 0.94347 0.90360 0.88530 0.87549 0.90795 0.90898 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -11.24 10.70 -148.98 -1.59 -12.83 16 3 C 0.07 1.89 5.62 71.98 0.40 2.29 16 4 C -0.07 -2.06 4.58 30.60 0.14 -1.92 16 5 C -0.10 -3.10 0.90 -52.40 -0.05 -3.15 16 6 C 0.52 20.21 6.55 87.66 0.57 20.78 16 7 O -0.60 -27.32 15.33 -3.05 -0.05 -27.37 16 8 N -0.69 -26.61 4.51 -463.06 -2.09 -28.70 16 9 C 0.13 5.07 4.53 86.38 0.39 5.46 16 10 C 0.18 6.30 2.19 45.99 0.10 6.40 16 11 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 12 C -0.13 -4.08 5.06 29.38 0.15 -3.93 16 13 C -0.10 -2.78 5.15 28.60 0.15 -2.63 16 14 C -0.10 -3.23 5.51 29.76 0.16 -3.06 16 15 C -0.13 -4.38 5.71 30.22 0.17 -4.21 16 16 C 0.19 8.05 4.63 86.48 0.40 8.45 16 17 N -0.59 -25.00 1.78 -674.26 -1.20 -26.20 16 18 C -0.23 -11.57 7.59 84.03 0.64 -10.93 16 19 H 0.04 2.16 6.78 -2.91 -0.02 2.14 16 20 C -0.01 -0.71 5.01 84.86 0.43 -0.28 16 21 N -0.91 -47.02 10.86 21.65 0.24 -46.79 16 22 Si 0.92 44.26 29.56 68.60 2.03 46.29 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 26 C -0.12 -2.98 6.91 31.12 0.21 -2.77 16 27 C -0.12 -2.89 7.73 31.12 0.24 -2.65 16 28 C -0.13 -4.15 7.21 31.12 0.22 -3.92 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.54 6.76 -2.39 -0.02 1.52 16 33 H 0.03 1.07 6.91 -2.39 -0.02 1.05 16 34 H 0.05 1.88 7.92 -2.39 -0.02 1.86 16 35 H 0.10 2.35 7.32 -2.38 -0.02 2.34 16 36 H 0.41 16.17 6.37 -92.71 -0.59 15.58 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.04 1.59 6.87 -2.39 -0.02 1.57 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.94 8.11 -2.38 -0.02 1.92 16 41 H 0.06 1.59 7.36 -2.39 -0.02 1.57 16 42 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.04 1.55 7.48 -2.39 -0.02 1.53 16 45 H 0.06 1.78 7.32 -2.38 -0.02 1.76 16 46 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.00 0.21 8.00 -2.39 -0.02 0.19 16 48 H 0.04 2.04 6.39 -2.39 -0.02 2.02 16 49 H 0.25 12.79 8.31 -92.71 -0.77 12.02 16 50 H 0.08 2.19 6.41 -2.38 -0.02 2.18 16 51 H 0.10 1.95 6.75 -2.39 -0.02 1.93 16 52 H 0.11 2.03 7.61 -2.39 -0.02 2.02 16 53 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 54 H 0.07 2.23 8.10 -2.38 -0.02 2.21 16 55 H 0.07 2.72 8.09 -2.39 -0.02 2.70 16 Total: -1.00 -60.13 410.16 3.19 -56.94 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.27 Total: 32.99 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 5.59 Total: 5.67 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -3.05 Total: -101.68 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.64 Total: -40.20 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -60.13 3.19 -56.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276327085.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.296 kcal (2) G-P(sol) polarization free energy of solvation -60.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds