Wall clock time and date at job start Tue Mar 31 2020 22:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99909 * 2 1 4 4 C 1.52997 * 109.47081 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46967 * 178.03097 * 4 3 2 6 6 C 1.50700 * 112.84872 * 294.78627 * 5 4 3 7 7 O 1.21288 * 119.99552 * 120.76348 * 6 5 4 8 8 N 1.34770 * 120.00338 * 300.77137 * 6 5 4 9 9 C 1.46499 * 120.00527 * 174.61953 * 8 6 5 10 10 C 1.52997 * 109.47442 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.45189 * 64.94585 * 10 9 8 12 12 C 1.54866 * 109.44764 * 184.86804 * 10 9 8 13 13 C 1.47098 * 110.31854 * 191.29156 * 12 10 9 14 14 C 1.52560 * 114.33148 * 297.19020 * 13 12 10 15 15 C 1.50879 * 109.35115 * 85.02824 * 14 13 12 16 16 C 1.53945 * 110.09248 * 268.11503 * 15 14 13 17 17 N 1.44579 * 109.44747 * 304.99689 * 10 9 8 18 18 C 1.36937 * 118.64563 * 329.22340 * 17 10 9 19 19 H 1.08008 * 119.99286 * 328.54793 * 18 17 10 20 20 C 1.38808 * 120.00304 * 148.54880 * 18 17 10 21 21 N 1.31620 * 119.99750 * 344.35978 * 20 18 17 22 22 Si 1.86795 * 119.99916 * 164.35323 * 20 18 17 23 23 H 1.48500 * 109.47037 * 60.00567 * 22 20 18 24 24 H 1.48505 * 109.47164 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47614 * 300.00305 * 22 20 18 26 26 C 1.53786 * 113.61746 * 163.59557 * 5 4 3 27 27 C 1.53950 * 87.01824 * 220.04845 * 26 5 4 28 28 C 1.53777 * 113.61661 * 65.98454 * 5 4 3 29 29 H 1.09003 * 109.47298 * 60.00114 * 1 2 3 30 30 H 1.09007 * 109.46505 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46896 * 300.00023 * 1 2 3 32 32 H 1.08992 * 109.47040 * 59.99783 * 3 2 1 33 33 H 1.09005 * 109.47119 * 300.00159 * 3 2 1 34 34 H 1.09008 * 109.46923 * 298.02395 * 4 3 2 35 35 H 1.08997 * 109.47677 * 58.02951 * 4 3 2 36 36 H 0.97001 * 120.00114 * 354.61286 * 8 6 5 37 37 H 1.09008 * 109.46844 * 299.99961 * 9 8 6 38 38 H 1.09000 * 109.47166 * 59.99338 * 9 8 6 39 39 H 1.09002 * 109.32957 * 311.54555 * 12 10 9 40 40 H 1.09003 * 109.33483 * 71.03272 * 12 10 9 41 41 H 1.09003 * 108.50937 * 175.93121 * 13 12 10 42 42 H 1.09002 * 108.51253 * 58.44859 * 13 12 10 43 43 H 1.09007 * 109.49158 * 325.06222 * 14 13 12 44 44 H 1.09001 * 109.49353 * 204.99076 * 14 13 12 45 45 H 1.08997 * 109.36791 * 147.92115 * 15 14 13 46 46 H 1.09003 * 109.36573 * 28.30191 * 15 14 13 47 47 H 1.09004 * 108.94807 * 279.87521 * 16 15 14 48 48 H 1.09000 * 108.95203 * 161.24607 * 16 15 14 49 49 H 0.97004 * 119.99859 * 179.97438 * 21 20 18 50 50 H 1.09004 * 113.60841 * 334.56197 * 26 5 4 51 51 H 1.08993 * 113.61527 * 105.46559 * 26 5 4 52 52 H 1.09011 * 113.53592 * 270.80506 * 27 26 5 53 53 H 1.09007 * 113.67025 * 139.93339 * 27 26 5 54 54 H 1.09003 * 113.61593 * 254.53088 * 28 5 4 55 55 H 1.08999 * 113.61656 * 25.43180 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5816 -0.0502 6 6 3.8597 3.3096 -1.3356 7 8 3.2742 4.3715 -1.3095 8 7 4.2437 2.7807 -2.5142 9 6 3.8523 3.4268 -3.7694 10 6 4.4137 2.6311 -4.9494 11 1 3.9507 1.6446 -4.9752 12 6 4.1051 3.3796 -6.2696 13 6 4.3912 2.5158 -7.4254 14 6 5.8548 2.1062 -7.5571 15 6 6.1122 0.8893 -6.7031 16 6 6.5873 1.3170 -5.3026 17 7 5.8442 2.4876 -4.7963 18 6 6.5385 3.4788 -4.1554 19 1 6.2021 4.5030 -4.2214 20 6 7.6745 3.1672 -3.4211 21 7 7.9160 1.9191 -3.0803 22 14 8.8606 4.5194 -2.9168 23 1 8.1490 5.5125 -2.0727 24 1 9.9851 3.9296 -2.1467 25 1 9.3909 5.1908 -4.1306 26 6 5.6443 2.6082 0.3424 27 6 5.3394 3.9166 1.0943 28 6 3.8883 3.4210 1.2098 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8465 -0.8900 34 1 3.8599 0.6745 0.9064 35 1 3.8544 0.6138 -0.8726 36 1 4.7794 1.9722 -2.5315 37 1 2.7649 3.4598 -3.8374 38 1 4.2488 4.4418 -3.7946 39 1 3.0535 3.6658 -6.2847 40 1 4.7215 4.2767 -6.3284 41 1 4.0963 3.0430 -8.3328 42 1 3.7855 1.6135 -7.3414 43 1 6.4930 2.9252 -7.2251 44 1 6.0749 1.8726 -8.5988 45 1 6.8794 0.2738 -7.1727 46 1 5.1929 0.3108 -6.6119 47 1 7.6480 1.5640 -5.3487 48 1 6.4492 0.4846 -4.6125 49 1 8.7101 1.7013 -2.5675 50 1 5.9378 1.7871 0.9964 51 1 6.3174 2.7372 -0.5050 52 1 5.4485 4.8087 0.4774 53 1 5.8503 3.9992 2.0537 54 1 3.1459 4.2053 1.0615 55 1 3.7009 2.8226 2.1013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276327086.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:10 Heat of formation + Delta-G solvation = -71.499183 kcal Electronic energy + Delta-G solvation = -32739.324668 eV Core-core repulsion = 28776.406545 eV Total energy + Delta-G solvation = -3962.918123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.72961 -39.90271 -38.82066 -38.19711 -35.96634 -35.17176 -33.36743 -32.61952 -32.45281 -28.90860 -27.88599 -27.25481 -26.57210 -25.78765 -25.19198 -23.99991 -22.98455 -22.06047 -21.28367 -20.78335 -19.86073 -18.09663 -17.59899 -17.36420 -17.16547 -17.02585 -16.69034 -16.26288 -16.15146 -15.87049 -15.81723 -15.46300 -15.20076 -14.86354 -14.73482 -14.43436 -14.27727 -13.85508 -13.67792 -13.41231 -13.38891 -13.29298 -13.12003 -12.90495 -12.80397 -12.69812 -12.56615 -12.39875 -12.28695 -12.09137 -12.02604 -11.83029 -11.56112 -11.39968 -11.30201 -11.23233 -11.20540 -11.14741 -11.02180 -10.65774 -10.54731 -10.34177 -9.74043 -8.47792 -7.76872 -5.23065 1.40848 1.44950 1.48472 1.76160 2.44305 2.54647 2.74323 3.37372 3.49139 3.60702 3.65732 3.84752 3.91031 4.03932 4.07072 4.09316 4.14665 4.25889 4.28303 4.42517 4.45647 4.51007 4.52164 4.56125 4.61136 4.61626 4.66532 4.79436 4.80551 4.82529 4.84863 4.93553 5.00784 5.04346 5.07562 5.08422 5.13306 5.19436 5.25712 5.26423 5.27707 5.37949 5.42627 5.48778 5.55684 5.65670 5.72618 5.77168 5.82655 5.88323 6.19421 6.51320 6.81720 7.30081 7.43186 8.01944 8.43098 9.25609 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.004973 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.670323 B = 5629.331318 C = 7328.490688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.070 3.930 4 C -0.088 4.088 5 C -0.101 4.101 6 C 0.530 3.470 7 O -0.595 6.595 8 N -0.685 5.685 9 C 0.134 3.866 10 C 0.174 3.826 11 H 0.053 0.947 12 C -0.128 4.128 13 C -0.100 4.100 14 C -0.103 4.103 15 C -0.132 4.132 16 C 0.191 3.809 17 N -0.584 5.584 18 C -0.239 4.239 19 H 0.039 0.961 20 C -0.011 4.011 21 N -0.907 5.907 22 Si 0.921 3.079 23 H -0.294 1.294 24 H -0.292 1.292 25 H -0.289 1.289 26 C -0.119 4.119 27 C -0.141 4.141 28 C -0.104 4.104 29 H 0.040 0.960 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.029 0.971 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.408 0.592 37 H 0.061 0.939 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.032 0.968 48 H 0.004 0.996 49 H 0.247 0.753 50 H 0.113 0.887 51 H 0.048 0.952 52 H 0.047 0.953 53 H 0.093 0.907 54 H 0.065 0.935 55 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.854 -4.852 3.126 12.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.007 4.007 4 C -0.126 4.126 5 C -0.104 4.104 6 C 0.316 3.684 7 O -0.477 6.477 8 N -0.333 5.333 9 C 0.009 3.991 10 C 0.067 3.933 11 H 0.071 0.929 12 C -0.168 4.168 13 C -0.137 4.137 14 C -0.140 4.140 15 C -0.171 4.171 16 C 0.066 3.934 17 N -0.306 5.306 18 C -0.369 4.369 19 H 0.057 0.943 20 C -0.208 4.208 21 N -0.552 5.552 22 Si 0.752 3.248 23 H -0.221 1.221 24 H -0.218 1.218 25 H -0.216 1.216 26 C -0.157 4.157 27 C -0.179 4.179 28 C -0.141 4.141 29 H 0.059 0.941 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.244 0.756 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.051 0.949 48 H 0.022 0.978 49 H 0.057 0.943 50 H 0.131 0.869 51 H 0.067 0.933 52 H 0.066 0.934 53 H 0.111 0.889 54 H 0.084 0.916 55 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.032 -4.400 3.186 12.297 hybrid contribution 1.307 1.054 0.040 1.680 sum -9.725 -3.346 3.226 10.778 Atomic orbital electron populations 1.22937 0.79608 1.03943 1.00634 1.87822 1.21428 1.28182 1.95547 1.22422 0.93780 0.84325 1.00151 1.21334 0.93102 0.93773 1.04343 1.21865 0.99144 0.96138 0.93238 1.20297 0.77810 0.84652 0.85595 1.90580 1.45450 1.23670 1.88010 1.45675 1.52747 1.29881 1.04963 1.21411 0.97166 0.96555 0.83960 1.20649 0.84697 0.96187 0.91814 0.92855 1.21280 1.00457 0.98943 0.96136 1.20265 0.96127 0.99677 0.97648 1.20900 0.96949 0.97704 0.98485 1.21929 1.00886 0.97603 0.96659 1.20740 0.94427 0.87685 0.90524 1.43673 1.00998 1.21500 1.64475 1.18773 1.07350 0.87763 1.23061 0.94291 1.25189 1.01261 0.96350 0.98025 1.70071 1.27395 1.16928 1.40823 0.86098 0.80269 0.80849 0.77581 1.22109 1.21773 1.21611 1.22987 0.93053 0.99287 1.00372 1.22801 0.97648 0.96467 1.00964 1.22847 0.96814 0.98728 0.95752 0.94132 0.87967 0.92867 0.91746 0.95290 0.88149 0.91857 0.75574 0.92098 0.94402 0.91123 0.94076 0.92011 0.92082 0.93945 0.91803 0.92005 0.92263 0.94908 0.97767 0.94309 0.86864 0.93299 0.93376 0.88874 0.91604 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -10.69 10.70 -148.98 -1.59 -12.29 16 3 C 0.07 1.84 5.65 71.98 0.41 2.24 16 4 C -0.09 -2.39 4.97 30.59 0.15 -2.24 16 5 C -0.10 -3.16 0.79 -52.40 -0.04 -3.20 16 6 C 0.53 20.87 5.68 87.66 0.50 21.37 16 7 O -0.59 -26.77 15.90 -3.05 -0.05 -26.82 16 8 N -0.69 -27.41 4.66 -463.06 -2.16 -29.57 16 9 C 0.13 5.25 4.53 86.38 0.39 5.64 16 10 C 0.17 6.45 2.19 45.99 0.10 6.55 16 11 H 0.05 1.90 8.07 -2.39 -0.02 1.88 16 12 C -0.13 -4.10 5.06 29.40 0.15 -3.95 16 13 C -0.10 -2.82 5.15 28.61 0.15 -2.67 16 14 C -0.10 -3.23 5.51 29.76 0.16 -3.07 16 15 C -0.13 -4.39 5.71 30.22 0.17 -4.22 16 16 C 0.19 8.18 4.67 86.49 0.40 8.58 16 17 N -0.58 -25.30 1.76 -674.23 -1.18 -26.48 16 18 C -0.24 -11.90 7.50 84.03 0.63 -11.27 16 19 H 0.04 2.10 6.89 -2.91 -0.02 2.08 16 20 C -0.01 -0.54 4.84 84.86 0.41 -0.13 16 21 N -0.91 -47.40 11.38 21.65 0.25 -47.16 16 22 Si 0.92 44.20 29.58 68.60 2.03 46.22 16 23 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 C -0.12 -3.83 7.23 31.18 0.23 -3.61 16 27 C -0.14 -4.28 7.81 31.18 0.24 -4.03 16 28 C -0.10 -2.82 6.42 31.12 0.20 -2.62 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 1.50 7.70 -2.39 -0.02 1.48 16 33 H 0.03 0.87 7.51 -2.38 -0.02 0.85 16 34 H 0.10 2.31 8.07 -2.38 -0.02 2.29 16 35 H 0.06 1.92 7.89 -2.39 -0.02 1.90 16 36 H 0.41 17.17 7.84 -92.71 -0.73 16.45 16 37 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.04 1.70 6.91 -2.39 -0.02 1.68 16 39 H 0.07 1.96 8.11 -2.39 -0.02 1.94 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.59 7.36 -2.39 -0.02 1.57 16 43 H 0.04 1.61 7.48 -2.38 -0.02 1.59 16 44 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.06 1.82 7.32 -2.39 -0.02 1.80 16 47 H 0.03 1.61 6.71 -2.38 -0.02 1.59 16 48 H 0.00 0.20 7.99 -2.39 -0.02 0.18 16 49 H 0.25 12.96 8.31 -92.71 -0.77 12.19 16 50 H 0.11 2.98 8.05 -2.38 -0.02 2.96 16 51 H 0.05 2.00 8.09 -2.39 -0.02 1.98 16 52 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 53 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 54 H 0.07 2.00 7.35 -2.39 -0.02 1.98 16 55 H 0.12 2.38 8.10 -2.39 -0.02 2.36 16 Total: -1.00 -59.74 417.18 2.91 -56.83 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.12 Total: 34.20 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.50 Total: 5.06 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -3.10 Total: -103.21 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -1.64 Total: -39.11 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -59.74 2.91 -56.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276327086.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.668 kcal (2) G-P(sol) polarization free energy of solvation -59.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds