Wall clock time and date at job start Tue Mar 31 2020 22:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00319 * 2 1 4 4 C 1.53782 * 113.61494 * 150.00294 * 3 2 1 5 5 C 1.53778 * 87.08399 * 89.19693 * 4 3 2 6 6 C 1.50700 * 113.61308 * 139.98021 * 5 4 3 7 7 O 1.21284 * 119.99874 * 1.52782 * 6 5 4 8 8 N 1.34774 * 119.99835 * 181.53235 * 6 5 4 9 9 C 1.46502 * 119.99704 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47066 * 179.97438 * 9 8 6 11 11 N 1.46499 * 109.47561 * 179.97438 * 10 9 8 12 12 C 1.36930 * 120.00015 * 270.00150 * 11 10 9 13 13 H 1.07999 * 120.00255 * 15.23194 * 12 11 10 14 14 C 1.38815 * 120.00013 * 195.23737 * 12 11 10 15 15 N 1.31616 * 120.00310 * 46.90494 * 14 12 11 16 16 Si 1.86811 * 119.99716 * 226.91030 * 14 12 11 17 17 H 1.48503 * 109.47132 * 59.99806 * 16 14 12 18 18 H 1.48497 * 109.46736 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46913 * 299.99865 * 16 14 12 20 20 C 1.46500 * 119.99982 * 89.99368 * 11 10 9 21 21 C 1.54245 * 108.89373 * 69.45731 * 20 11 10 22 22 C 1.50477 * 108.52427 * 159.26585 * 21 20 11 23 23 C 1.54062 * 112.50037 * 94.15026 * 22 21 20 24 24 C 1.54062 * 112.81641 * 318.27970 * 23 22 21 25 25 C 1.50466 * 112.50012 * 318.28713 * 24 23 22 26 26 C 1.45537 * 108.89899 * 306.57155 * 20 11 10 27 27 C 1.53785 * 87.17398 * 25.39003 * 5 4 3 28 28 H 1.08995 * 109.47796 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47218 * 300.00546 * 1 2 3 30 30 H 1.09002 * 109.46899 * 59.99994 * 1 2 3 31 31 H 1.08994 * 112.84661 * 18.79971 * 3 2 1 32 32 H 1.09004 * 113.60944 * 334.64540 * 4 3 2 33 33 H 1.09001 * 113.61044 * 203.75357 * 4 3 2 34 34 H 1.08995 * 113.61544 * 270.80059 * 5 4 3 35 35 H 0.96995 * 120.00314 * 0.27370 * 8 6 5 36 36 H 1.09001 * 109.47080 * 299.99598 * 9 8 6 37 37 H 1.08998 * 109.47562 * 59.99675 * 9 8 6 38 38 H 1.09001 * 109.46896 * 299.99776 * 10 9 8 39 39 H 1.09003 * 109.47537 * 59.99722 * 10 9 8 40 40 H 0.97004 * 120.00064 * 175.74700 * 15 14 12 41 41 H 1.09005 * 108.87548 * 187.96462 * 20 11 10 42 42 H 1.09003 * 109.62489 * 278.97299 * 21 20 11 43 43 H 1.08994 * 109.63094 * 39.55378 * 21 20 11 44 44 H 1.09000 * 108.87348 * 333.36967 * 22 21 20 45 45 H 1.09008 * 108.87266 * 214.92705 * 22 21 20 46 46 H 1.09006 * 108.81303 * 197.42385 * 23 22 21 47 47 H 1.08998 * 108.72759 * 79.08634 * 23 22 21 48 48 H 1.09005 * 108.87984 * 197.50618 * 24 23 22 49 49 H 1.09002 * 108.87351 * 79.06787 * 24 23 22 50 50 H 1.09001 * 109.62599 * 334.44415 * 25 24 23 51 51 H 1.08992 * 109.63583 * 213.86208 * 25 24 23 52 52 H 1.09000 * 108.89861 * 303.44339 * 26 20 11 53 53 H 1.09007 * 108.89401 * 62.03180 * 26 20 11 54 54 H 1.09001 * 113.61315 * 89.15416 * 27 5 4 55 55 H 1.08993 * 113.61876 * 220.06072 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3757 1.3718 0.7045 5 6 4.0064 1.0350 -0.6570 6 6 5.2714 1.8027 -0.9427 7 8 5.7107 2.5759 -0.1181 8 7 5.9143 1.6299 -2.1145 9 6 7.1444 2.3757 -2.3920 10 6 7.6683 1.9974 -3.7788 11 7 8.8980 2.7437 -4.0566 12 6 8.8330 3.9677 -4.6668 13 1 7.8916 4.4942 -4.7224 14 6 9.9771 4.5320 -5.2143 15 7 10.7680 3.8075 -5.9770 16 14 10.3941 6.3198 -4.8683 17 1 10.5624 6.5147 -3.4058 18 1 11.6568 6.6769 -5.5634 19 1 9.2948 7.1886 -5.3602 20 6 10.1973 2.1804 -3.6813 21 6 10.4969 0.9688 -4.5876 22 6 11.9800 0.7145 -4.5710 23 6 12.3864 -0.3349 -3.5188 24 6 11.6395 -0.1615 -2.1825 25 6 11.5217 1.2813 -1.7718 26 6 10.1668 1.8237 -2.2706 27 6 2.7536 1.6494 -1.3037 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.3138 2.0788 0.3237 32 1 3.5176 0.5947 1.4556 33 1 3.6305 2.3666 1.0698 34 1 4.1107 -0.0348 -0.8373 35 1 5.5607 1.0145 -2.7756 36 1 6.9356 3.4451 -2.3613 37 1 7.8953 2.1305 -1.6409 38 1 7.8772 0.9281 -3.8089 39 1 6.9176 2.2423 -4.5301 40 1 11.5335 4.2173 -6.4095 41 1 10.9676 2.9356 -3.8379 42 1 9.9708 0.0913 -4.2117 43 1 10.1739 1.1845 -5.6060 44 1 12.4957 1.6499 -4.3537 45 1 12.2887 0.3642 -5.5560 46 1 13.4579 -0.2525 -3.3358 47 1 12.1733 -1.3279 -3.9144 48 1 12.1754 -0.7067 -1.4055 49 1 10.6391 -0.5831 -2.2804 50 1 12.3330 1.8564 -2.2180 51 1 11.5692 1.3579 -0.6856 52 1 9.9044 2.7073 -1.6887 53 1 9.4041 1.0604 -2.1159 54 1 2.8382 2.7203 -1.4884 55 1 2.3942 1.0963 -2.1713 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277375442.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:38 Heat of formation + Delta-G solvation = -63.305614 kcal Electronic energy + Delta-G solvation = -30915.905390 eV Core-core repulsion = 26953.342567 eV Total energy + Delta-G solvation = -3962.562823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.40770 -40.28801 -39.43798 -37.17042 -36.47953 -35.61187 -33.63382 -32.78550 -31.80672 -29.75170 -27.86625 -26.77944 -26.63415 -25.89979 -25.53113 -24.38834 -22.69885 -21.96957 -20.93450 -20.34241 -19.94501 -18.94766 -18.50029 -17.19286 -16.99799 -16.73109 -16.57431 -16.34945 -16.09712 -16.02798 -15.76443 -15.42964 -15.18950 -14.97611 -14.78081 -14.54590 -14.15187 -13.93877 -13.70347 -13.60216 -13.45987 -13.17029 -13.04235 -12.88400 -12.85174 -12.81824 -12.74611 -12.46117 -12.30762 -12.24880 -11.94225 -11.71019 -11.57461 -11.46034 -11.41247 -11.26092 -11.12557 -10.99953 -10.88204 -10.74579 -10.43948 -10.22138 -9.97981 -8.89812 -8.02864 -5.02271 1.39711 1.48202 1.54481 1.65618 2.23119 2.54839 2.72189 3.05436 3.46206 3.57228 3.64124 3.74228 3.89284 3.95598 4.09376 4.16844 4.24654 4.28234 4.35316 4.40469 4.44918 4.47782 4.53392 4.58635 4.61938 4.63975 4.73297 4.75756 4.76841 4.83333 4.90731 4.97516 5.00379 5.01891 5.05355 5.08379 5.13279 5.20302 5.21350 5.26076 5.31191 5.37380 5.41948 5.49021 5.55807 5.56530 5.66251 5.76738 5.83011 6.04762 6.29082 6.30079 6.64268 7.13895 7.32363 7.93177 8.38457 9.02196 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012056 B = 0.002774 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.948633 B =10091.307700 C =11472.571604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.387 6.387 3 C 0.071 3.929 4 C -0.121 4.121 5 C -0.125 4.125 6 C 0.514 3.486 7 O -0.592 6.592 8 N -0.711 5.711 9 C 0.108 3.892 10 C 0.149 3.851 11 N -0.596 5.596 12 C -0.295 4.295 13 H 0.059 0.941 14 C -0.002 4.002 15 N -0.864 5.864 16 Si 0.895 3.105 17 H -0.295 1.295 18 H -0.293 1.293 19 H -0.281 1.281 20 C 0.194 3.806 21 C -0.096 4.096 22 C -0.102 4.102 23 C -0.109 4.109 24 C -0.110 4.110 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.135 4.135 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.413 0.587 36 H 0.031 0.969 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.253 0.747 41 H 0.042 0.958 42 H 0.052 0.948 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.045 0.955 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.058 0.942 50 H 0.051 0.949 51 H 0.069 0.931 52 H 0.032 0.968 53 H 0.061 0.939 54 H 0.088 0.912 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.559 -12.666 9.418 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.306 6.306 3 C 0.013 3.987 4 C -0.159 4.159 5 C -0.146 4.146 6 C 0.302 3.698 7 O -0.472 6.472 8 N -0.363 5.363 9 C -0.019 4.019 10 C 0.022 3.978 11 N -0.317 5.317 12 C -0.424 4.424 13 H 0.077 0.923 14 C -0.203 4.203 15 N -0.504 5.504 16 Si 0.724 3.276 17 H -0.222 1.222 18 H -0.220 1.220 19 H -0.207 1.207 20 C 0.088 3.912 21 C -0.136 4.136 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.147 4.147 25 C -0.150 4.150 26 C -0.157 4.157 27 C -0.173 4.173 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.150 0.850 35 H 0.250 0.750 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.077 0.923 50 H 0.069 0.931 51 H 0.088 0.912 52 H 0.051 0.949 53 H 0.079 0.921 54 H 0.107 0.893 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.946 -12.280 9.874 20.394 hybrid contribution 0.270 1.673 -0.527 1.775 sum -12.676 -10.606 9.347 18.988 Atomic orbital electron populations 1.23019 0.79307 1.03937 1.00971 1.87850 1.21509 1.26621 1.94596 1.23011 0.94300 0.85670 0.95706 1.23087 0.93917 1.03216 0.95683 1.22775 0.90449 1.01346 0.99998 1.21182 0.85643 0.82026 0.80956 1.90663 1.68861 1.39711 1.47997 1.45959 1.26230 1.45401 1.18698 1.22117 0.85424 0.94875 0.99483 1.20794 0.88907 0.95448 0.92666 1.44256 1.00968 1.19431 1.67065 1.18963 0.95222 0.93694 1.34473 0.92308 1.24874 0.99404 0.98665 0.97365 1.70487 1.17737 1.37513 1.24708 0.86376 0.77282 0.85768 0.78173 1.22233 1.21983 1.20655 1.19140 0.86749 0.93921 0.91373 1.21421 0.95567 0.97118 0.99473 1.21108 0.96315 0.98367 0.98225 1.21898 0.99807 0.98466 0.94469 1.21274 1.00893 0.95635 0.96918 1.21267 0.96346 0.97123 1.00243 1.21057 0.97880 0.99662 0.97119 1.23390 0.93403 1.01543 0.98977 0.88397 0.93043 0.93028 0.88801 0.90012 0.89035 0.85016 0.75044 0.95041 0.92656 0.92144 0.93275 0.93812 0.93981 0.92967 0.94306 0.94679 0.93595 0.91901 0.91373 0.90700 0.92307 0.93062 0.91213 0.94886 0.92070 0.89340 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.85 113.37 1.23 1.47 16 2 O -0.39 -6.45 10.63 -148.98 -1.58 -8.03 16 3 C 0.07 1.15 4.38 31.18 0.14 1.28 16 4 C -0.12 -2.45 7.23 31.12 0.22 -2.23 16 5 C -0.12 -2.58 4.08 -11.01 -0.04 -2.63 16 6 C 0.51 15.20 7.35 87.66 0.64 15.84 16 7 O -0.59 -23.09 15.91 -3.04 -0.05 -23.14 16 8 N -0.71 -20.01 5.56 -463.06 -2.57 -22.59 16 9 C 0.11 3.93 5.68 86.38 0.49 4.42 16 10 C 0.15 5.64 5.01 86.38 0.43 6.08 16 11 N -0.60 -27.92 2.38 -688.47 -1.64 -29.56 16 12 C -0.30 -15.92 9.49 84.04 0.80 -15.12 16 13 H 0.06 3.24 8.06 -2.91 -0.02 3.22 16 14 C 0.00 -0.09 4.05 84.86 0.34 0.26 16 15 N -0.86 -48.09 12.12 21.65 0.26 -47.83 16 16 Si 0.90 44.24 29.69 68.60 2.04 46.27 16 17 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 18 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 19 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 20 C 0.19 8.47 1.33 43.13 0.06 8.52 16 21 C -0.10 -3.84 4.46 30.20 0.13 -3.71 16 22 C -0.10 -3.62 5.31 30.14 0.16 -3.46 16 23 C -0.11 -2.94 5.85 31.31 0.18 -2.76 16 24 C -0.11 -2.87 5.31 30.13 0.16 -2.71 16 25 C -0.11 -3.47 5.61 30.20 0.17 -3.30 16 26 C -0.12 -4.45 3.26 28.74 0.09 -4.36 16 27 C -0.14 -2.29 7.47 31.18 0.23 -2.06 16 28 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 1.21 7.87 -2.39 -0.02 1.19 16 32 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.09 2.14 7.45 -2.39 -0.02 2.12 16 34 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.41 8.80 8.47 -92.71 -0.79 8.01 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 2.16 5.40 -2.39 -0.01 2.15 16 38 H 0.06 2.05 7.26 -2.39 -0.02 2.03 16 39 H 0.05 1.87 8.04 -2.39 -0.02 1.85 16 40 H 0.25 13.76 8.32 -92.70 -0.77 12.99 16 41 H 0.04 2.18 5.35 -2.38 -0.01 2.17 16 42 H 0.05 1.85 6.68 -2.39 -0.02 1.83 16 43 H 0.04 1.83 7.98 -2.39 -0.02 1.81 16 44 H 0.03 1.40 6.63 -2.39 -0.02 1.38 16 45 H 0.05 1.60 8.14 -2.38 -0.02 1.59 16 46 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 47 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 49 H 0.06 1.54 6.63 -2.39 -0.02 1.53 16 50 H 0.05 1.72 6.98 -2.39 -0.02 1.71 16 51 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.03 1.37 7.68 -2.39 -0.02 1.35 16 53 H 0.06 2.14 5.61 -2.38 -0.01 2.13 16 54 H 0.09 1.63 8.09 -2.39 -0.02 1.61 16 55 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -66.76 414.54 1.98 -64.78 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.07 Total: 24.54 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 5.45 Total: -4.45 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -3.95 Total: -99.97 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -1.63 Total: -31.17 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.04 Total: 46.27 kcal Total: -66.76 1.98 -64.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277375442.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.476 kcal (2) G-P(sol) polarization free energy of solvation -66.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds