Wall clock time and date at job start Tue Mar 31 2020 22:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00112 * 2 1 4 4 H 1.08993 * 109.47230 * 340.21995 * 3 2 1 5 5 C 1.50706 * 109.46835 * 220.22546 * 3 2 1 6 6 O 1.21276 * 120.00493 * 354.99903 * 5 3 2 7 7 N 1.34777 * 119.99543 * 175.00178 * 5 3 2 8 8 C 1.46508 * 119.99670 * 180.02562 * 7 5 3 9 9 C 1.52995 * 109.46986 * 179.97438 * 8 7 5 10 10 N 1.46503 * 109.47466 * 179.97438 * 9 8 7 11 11 C 1.36936 * 119.99915 * 264.39949 * 10 9 8 12 12 H 1.08002 * 119.99882 * 143.46161 * 11 10 9 13 13 C 1.38810 * 120.00097 * 323.45821 * 11 10 9 14 14 N 1.31623 * 119.99971 * 338.37543 * 13 11 10 15 15 Si 1.86801 * 120.00083 * 158.38067 * 13 11 10 16 16 H 1.48500 * 109.47147 * 59.99911 * 15 13 11 17 17 H 1.48498 * 109.46927 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46857 * 299.99745 * 15 13 11 19 19 C 1.46501 * 119.99730 * 84.38970 * 10 9 8 20 20 C 1.50469 * 109.62456 * 120.96872 * 19 10 9 21 21 C 1.54066 * 112.50110 * 213.85730 * 20 19 10 22 22 C 1.54068 * 112.81877 * 318.28478 * 21 20 19 23 23 C 1.50470 * 112.49172 * 318.28342 * 22 21 20 24 24 C 1.54239 * 108.51625 * 94.15657 * 23 22 21 25 25 C 1.45545 * 112.40949 * 279.99822 * 24 23 22 26 26 C 1.52999 * 109.47141 * 100.22840 * 3 2 1 27 27 C 1.53002 * 117.49736 * 3.17307 * 26 3 2 28 28 C 1.52997 * 117.49491 * 294.51181 * 26 3 2 29 29 H 1.09004 * 109.47097 * 63.72573 * 1 2 3 30 30 H 1.08996 * 109.47614 * 183.73158 * 1 2 3 31 31 H 1.09007 * 109.47040 * 303.73013 * 1 2 3 32 32 H 0.96999 * 120.00306 * 359.97438 * 7 5 3 33 33 H 1.08994 * 109.47349 * 59.99627 * 8 7 5 34 34 H 1.09000 * 109.46662 * 299.99648 * 8 7 5 35 35 H 1.09004 * 109.47116 * 59.99829 * 9 8 7 36 36 H 1.08995 * 109.47528 * 299.99916 * 9 8 7 37 37 H 0.96992 * 119.99888 * 180.02562 * 14 13 11 38 38 H 1.08998 * 109.62482 * 0.39142 * 19 10 9 39 39 H 1.09006 * 108.87906 * 334.63563 * 20 19 10 40 40 H 1.09004 * 108.87724 * 93.17816 * 20 19 10 41 41 H 1.09000 * 108.81822 * 197.41954 * 21 20 19 42 42 H 1.09001 * 108.81338 * 79.14653 * 21 20 19 43 43 H 1.08994 * 108.87833 * 197.50839 * 22 21 20 44 44 H 1.09000 * 108.87595 * 79.05707 * 22 21 20 45 45 H 1.09006 * 109.62828 * 213.86073 * 23 22 21 46 46 H 1.09001 * 109.63402 * 334.24949 * 23 22 21 47 47 H 1.09003 * 108.89666 * 40.74903 * 24 23 22 48 48 H 1.08998 * 108.89748 * 159.24215 * 24 23 22 49 49 H 1.08999 * 108.89782 * 182.69233 * 25 24 23 50 50 H 1.08996 * 108.89296 * 301.28356 * 25 24 23 51 51 H 1.09002 * 115.55001 * 148.84957 * 26 3 2 52 52 H 1.08994 * 117.49790 * 0.02562 * 27 26 3 53 53 H 1.08999 * 117.49418 * 145.02926 * 27 26 3 54 54 H 1.09002 * 117.50282 * 214.97784 * 28 26 3 55 55 H 1.09001 * 117.50147 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2746 2.0307 -0.3477 5 6 3.2056 1.3230 -0.9176 6 8 3.5826 0.2966 -1.4422 7 7 3.8556 2.4795 -1.1552 8 6 5.0174 2.4967 -2.0477 9 6 5.5644 3.9222 -2.1453 10 7 6.7265 3.9394 -3.0372 11 6 7.9902 3.8522 -2.5170 12 1 8.7544 3.3006 -3.0445 13 6 8.2891 4.4727 -1.3119 14 7 7.5425 5.4673 -0.8808 15 14 9.7509 3.8962 -0.3018 16 1 10.9940 4.0456 -1.1002 17 1 9.8541 4.7160 0.9321 18 1 9.5669 2.4691 0.0654 19 6 6.5365 4.0498 -4.4857 20 6 7.2416 5.2773 -4.9957 21 6 6.5001 5.9361 -6.1747 22 6 5.9537 4.9096 -7.1854 23 6 6.9299 3.7984 -7.4620 24 6 6.6069 2.6178 -6.5235 25 6 7.1391 2.8130 -5.1830 26 6 2.4517 1.6671 1.4196 27 6 2.2766 0.6043 2.5062 28 6 1.3598 1.8299 2.4789 29 1 -0.3633 0.4549 -0.9215 30 1 -0.3634 -1.0254 0.0669 31 1 -0.3633 0.5707 0.8547 32 1 3.5539 3.3005 -0.7360 33 1 4.7196 2.1536 -3.0385 34 1 5.7895 1.8371 -1.6517 35 1 5.8622 4.2657 -1.1545 36 1 4.7921 4.5815 -2.5414 37 1 7.7516 5.9011 -0.0389 38 1 5.4721 4.1151 -4.7113 39 1 7.3245 5.9995 -4.1835 40 1 8.2433 4.9984 -5.3227 41 1 7.1866 6.6069 -6.6911 42 1 5.6679 6.5214 -5.7835 43 1 5.7279 5.4216 -8.1208 44 1 5.0335 4.4802 -6.7895 45 1 6.8354 3.4778 -8.4996 46 1 7.9455 4.1489 -7.2782 47 1 5.5248 2.5029 -6.4603 48 1 7.0329 1.7065 -6.9431 49 1 6.9208 1.9287 -4.5843 50 1 8.2201 2.9374 -5.2470 51 1 3.3219 2.3198 1.4893 52 1 1.8474 -0.3526 2.2096 53 1 3.0315 0.5581 3.2911 54 1 1.5119 2.5893 3.2460 55 1 0.3270 1.6797 2.1644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277376141.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:55 Heat of formation + Delta-G solvation = -64.980570 kcal Electronic energy + Delta-G solvation = -31129.882202 eV Core-core repulsion = 27167.246747 eV Total energy + Delta-G solvation = -3962.635455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.20569 -40.04999 -39.18139 -37.26137 -36.78017 -35.50171 -33.51444 -33.18085 -31.86510 -30.37456 -28.76246 -26.98363 -26.26281 -25.27415 -24.54934 -23.24116 -22.56247 -22.40811 -21.36402 -21.19839 -20.10177 -18.75983 -18.01520 -17.79470 -17.32239 -17.13239 -16.55854 -16.21596 -16.15431 -15.81147 -15.48752 -15.39968 -15.31530 -15.14837 -14.81878 -14.37852 -14.31142 -14.03622 -13.92207 -13.82685 -13.36998 -13.12300 -12.96714 -12.88667 -12.82177 -12.59100 -12.39775 -12.30315 -12.26327 -12.14895 -11.97406 -11.66474 -11.54325 -11.50670 -11.39991 -11.26478 -11.18136 -10.99398 -10.89190 -10.82944 -10.48316 -10.38423 -10.06822 -8.53651 -7.83637 -5.39410 1.43205 1.47023 1.52426 1.52965 1.90404 2.51082 2.79885 3.05460 3.26210 3.52632 3.65754 3.74680 3.86730 3.88696 4.01818 4.12457 4.19482 4.21697 4.34255 4.35963 4.40880 4.43169 4.47934 4.49406 4.53976 4.58729 4.62816 4.77133 4.77161 4.79033 4.80178 4.86870 4.99948 5.01008 5.11905 5.19524 5.20508 5.24272 5.27831 5.29289 5.38019 5.40745 5.46824 5.48885 5.54825 5.66409 5.67076 5.70934 5.73571 5.84740 6.04344 6.50555 6.59849 7.18861 7.24625 7.89600 8.40774 9.14810 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.003417 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.210185 B = 8192.773950 C =10144.027302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.384 6.384 3 C 0.114 3.886 4 H 0.121 0.879 5 C 0.504 3.496 6 O -0.580 6.580 7 N -0.707 5.707 8 C 0.121 3.879 9 C 0.150 3.850 10 N -0.589 5.589 11 C -0.253 4.253 12 H 0.049 0.951 13 C -0.025 4.025 14 N -0.908 5.908 15 Si 0.940 3.060 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.181 3.819 20 C -0.109 4.109 21 C -0.108 4.108 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.108 4.108 25 C -0.117 4.117 26 C -0.197 4.197 27 C -0.173 4.173 28 C -0.146 4.146 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.413 0.587 33 H 0.043 0.957 34 H 0.028 0.972 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.252 0.748 38 H 0.057 0.943 39 H 0.034 0.966 40 H 0.038 0.962 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.033 0.967 50 H 0.039 0.961 51 H 0.109 0.891 52 H 0.098 0.902 53 H 0.094 0.906 54 H 0.112 0.888 55 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.116 -1.973 -1.455 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.302 6.302 3 C 0.053 3.947 4 H 0.138 0.862 5 C 0.290 3.710 6 O -0.459 6.459 7 N -0.361 5.361 8 C -0.006 4.006 9 C 0.023 3.977 10 N -0.309 5.309 11 C -0.384 4.384 12 H 0.067 0.933 13 C -0.223 4.223 14 N -0.552 5.552 15 Si 0.769 3.231 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.216 1.216 19 C 0.075 3.925 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.157 4.157 26 C -0.215 4.215 27 C -0.210 4.210 28 C -0.182 4.182 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.249 0.751 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.052 0.948 50 H 0.058 0.942 51 H 0.128 0.872 52 H 0.117 0.883 53 H 0.113 0.887 54 H 0.130 0.870 55 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.707 -2.742 -1.700 15.057 hybrid contribution 1.137 0.163 1.024 1.539 sum -13.570 -2.579 -0.676 13.830 Atomic orbital electron populations 1.23227 0.78833 1.04413 1.01431 1.88024 1.21810 1.25697 1.94651 1.21343 0.93231 0.87323 0.92823 0.86179 1.21214 0.85071 0.83106 0.81598 1.90665 1.68269 1.34275 1.52688 1.45892 1.30920 1.10658 1.48591 1.21924 0.85765 1.01068 0.91794 1.20866 0.88174 0.90517 0.98137 1.43962 1.01578 1.84418 1.00914 1.18975 0.89116 1.25363 1.04900 0.93349 1.25567 0.99634 0.95525 1.01537 1.70078 1.41951 1.21318 1.21840 0.85783 0.81050 0.77538 0.78714 1.20446 1.21557 1.21633 1.20208 0.96775 0.92664 0.82818 1.21613 0.98693 0.97860 0.96616 1.21863 0.99481 0.97899 0.95416 1.21313 0.98633 0.96340 0.98703 1.21308 0.99535 0.94978 0.99088 1.20426 1.00811 0.98772 0.94619 1.20792 0.99881 0.98522 0.96469 1.22695 1.03433 1.05735 0.89687 1.22958 1.03462 0.94917 0.99625 1.23172 0.95530 0.99898 0.99618 0.93081 0.88278 0.91510 0.75076 0.93819 0.95359 0.90523 0.94259 0.93917 0.92472 0.94727 0.94295 0.92119 0.92888 0.90704 0.92493 0.90313 0.92596 0.92339 0.92173 0.94799 0.94226 0.87244 0.88319 0.88724 0.86960 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.70 113.37 1.21 1.48 16 2 O -0.38 -10.18 8.24 -129.99 -1.07 -11.26 16 3 C 0.11 2.83 2.93 29.85 0.09 2.92 16 4 H 0.12 2.16 7.70 -2.39 -0.02 2.14 16 5 C 0.50 17.53 7.14 87.66 0.63 18.15 16 6 O -0.58 -26.19 16.51 15.97 0.26 -25.93 16 7 N -0.71 -23.48 5.43 -463.06 -2.52 -26.00 16 8 C 0.12 4.97 5.99 86.38 0.52 5.49 16 9 C 0.15 6.58 5.29 86.38 0.46 7.04 16 10 N -0.59 -27.78 2.26 -680.26 -1.53 -29.31 16 11 C -0.25 -13.38 8.46 84.03 0.71 -12.67 16 12 H 0.05 2.65 7.38 -2.91 -0.02 2.62 16 13 C -0.02 -1.33 4.90 84.86 0.42 -0.91 16 14 N -0.91 -49.86 11.50 21.65 0.25 -49.61 16 15 Si 0.94 44.37 29.61 68.60 2.03 46.40 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 17 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 18 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 19 C 0.18 7.23 2.31 44.59 0.10 7.34 16 20 C -0.11 -4.20 4.46 30.14 0.13 -4.07 16 21 C -0.11 -3.19 5.86 31.32 0.18 -3.01 16 22 C -0.11 -2.76 5.31 30.14 0.16 -2.60 16 23 C -0.11 -2.78 5.60 30.20 0.17 -2.61 16 24 C -0.11 -3.13 5.26 28.74 0.15 -2.98 16 25 C -0.12 -4.35 4.20 28.74 0.12 -4.23 16 26 C -0.20 -4.33 5.70 -10.79 -0.06 -4.39 16 27 C -0.17 -3.58 9.87 30.62 0.30 -3.27 16 28 C -0.15 -2.21 10.08 30.62 0.31 -1.90 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 0.75 6.01 -2.38 -0.01 0.74 16 32 H 0.41 11.11 8.47 -92.71 -0.79 10.32 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.08 3.78 5.53 -2.38 -0.01 3.77 16 36 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 37 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 38 H 0.06 2.17 6.73 -2.39 -0.02 2.16 16 39 H 0.03 1.60 7.87 -2.38 -0.02 1.59 16 40 H 0.04 1.54 6.63 -2.38 -0.02 1.53 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 1.43 6.64 -2.39 -0.02 1.41 16 45 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.06 1.52 6.99 -2.39 -0.02 1.50 16 47 H 0.06 1.64 7.47 -2.39 -0.02 1.62 16 48 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.03 1.39 8.12 -2.39 -0.02 1.37 16 50 H 0.04 1.56 7.19 -2.39 -0.02 1.54 16 51 H 0.11 2.60 7.98 -2.39 -0.02 2.58 16 52 H 0.10 2.19 7.02 -2.39 -0.02 2.18 16 53 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 54 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 55 H 0.11 1.29 6.14 -2.39 -0.01 1.27 16 Total: -1.00 -68.36 418.72 3.10 -65.26 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.08 Total: 30.69 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 5.60 Total: -0.24 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -3.80 Total: -104.93 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.81 Total: -37.18 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.36 3.10 -65.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277376141.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.278 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds