Wall clock time and date at job start Tue Mar 31 2020 22:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00290 * 2 1 4 4 H 1.09004 * 109.46664 * 332.30936 * 3 2 1 5 5 C 1.50703 * 109.47134 * 92.30312 * 3 2 1 6 6 O 1.21283 * 119.99955 * 5.00290 * 5 3 2 7 7 N 1.34769 * 120.00232 * 185.00356 * 5 3 2 8 8 C 1.46497 * 120.00398 * 179.97438 * 7 5 3 9 9 C 1.52999 * 109.47408 * 179.97438 * 8 7 5 10 10 N 1.46504 * 109.46820 * 180.02562 * 9 8 7 11 11 C 1.36937 * 120.00046 * 95.79339 * 10 9 8 12 12 H 1.08002 * 119.99953 * 216.33499 * 11 10 9 13 13 C 1.38811 * 120.00341 * 36.32513 * 11 10 9 14 14 N 1.31613 * 120.00502 * 214.09668 * 13 11 10 15 15 Si 1.86809 * 119.99570 * 34.10100 * 13 11 10 16 16 H 1.48504 * 109.47042 * 95.37896 * 15 13 11 17 17 H 1.48500 * 109.46851 * 215.37855 * 15 13 11 18 18 H 1.48497 * 109.47226 * 335.37916 * 15 13 11 19 19 C 1.46498 * 120.00076 * 275.78110 * 10 9 8 20 20 C 1.54238 * 108.90016 * 245.18314 * 19 10 9 21 21 C 1.50480 * 108.52584 * 159.26330 * 20 19 10 22 22 C 1.54068 * 112.49557 * 94.15216 * 21 20 19 23 23 C 1.54064 * 112.81845 * 318.28190 * 22 21 20 24 24 C 1.50479 * 112.49583 * 318.28960 * 23 22 21 25 25 C 1.45540 * 108.89374 * 122.29820 * 19 10 9 26 26 C 1.52992 * 109.47307 * 212.30658 * 3 2 1 27 27 C 1.53002 * 117.50084 * 132.09925 * 26 3 2 28 28 C 1.52999 * 117.50164 * 63.43660 * 26 3 2 29 29 H 1.09005 * 109.46818 * 184.88810 * 1 2 3 30 30 H 1.09003 * 109.47037 * 304.88396 * 1 2 3 31 31 H 1.09000 * 109.47220 * 64.88738 * 1 2 3 32 32 H 0.97001 * 119.99913 * 0.02562 * 7 5 3 33 33 H 1.09000 * 109.46903 * 60.00160 * 8 7 5 34 34 H 1.09002 * 109.47436 * 300.00479 * 8 7 5 35 35 H 1.09000 * 109.46783 * 60.00300 * 9 8 7 36 36 H 1.08993 * 109.47341 * 300.00114 * 9 8 7 37 37 H 0.97003 * 120.00177 * 180.02562 * 14 13 11 38 38 H 1.09005 * 108.87295 * 3.69930 * 19 10 9 39 39 H 1.09002 * 109.63138 * 278.97650 * 20 19 10 40 40 H 1.08999 * 109.62423 * 39.55798 * 20 19 10 41 41 H 1.08998 * 108.87728 * 333.37453 * 21 20 19 42 42 H 1.08995 * 108.87485 * 214.93183 * 21 20 19 43 43 H 1.08997 * 108.81280 * 197.42097 * 22 21 20 44 44 H 1.08999 * 108.72493 * 79.08601 * 22 21 20 45 45 H 1.08995 * 108.87919 * 197.50997 * 23 22 21 46 46 H 1.09001 * 108.87960 * 79.06223 * 23 22 21 47 47 H 1.08996 * 109.62479 * 334.43911 * 24 23 22 48 48 H 1.09000 * 109.62756 * 213.85934 * 24 23 22 49 49 H 1.08998 * 108.89557 * 303.44578 * 25 19 10 50 50 H 1.09003 * 108.89536 * 62.03527 * 25 19 10 51 51 H 1.09007 * 115.55193 * 277.76316 * 26 3 2 52 52 H 1.09002 * 117.49683 * 359.97438 * 27 26 3 53 53 H 1.08997 * 117.49775 * 145.01446 * 27 26 3 54 54 H 1.08998 * 117.49879 * 214.97710 * 28 26 3 55 55 H 1.08997 * 117.50032 * 0.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3267 2.0075 -0.4776 5 6 2.2668 1.7411 1.4197 6 8 2.0651 0.9723 2.3358 7 7 2.7202 2.9850 1.6714 8 6 2.9691 3.4088 3.0515 9 6 3.4753 4.8526 3.0583 10 7 3.7247 5.2760 4.4385 11 6 4.9869 5.1924 4.9629 12 1 5.1241 4.9234 5.9999 13 6 6.0901 5.4530 4.1617 14 7 7.2116 4.7906 4.3502 15 14 5.9827 6.7441 2.8159 16 1 6.5034 8.0372 3.3278 17 1 6.7929 6.3113 1.6491 18 1 4.5666 6.9102 2.4010 19 6 2.6237 5.7891 5.2576 20 6 2.8919 7.2729 5.5821 21 6 1.5879 7.9238 5.9565 22 6 1.3480 7.9305 7.4784 23 6 1.7451 6.6029 8.1517 24 6 1.3251 5.4018 7.3485 25 6 2.5071 4.9715 6.4560 26 6 3.3314 1.2754 -0.7709 27 6 3.5647 2.3684 -1.8159 28 6 3.2724 0.9332 -2.2610 29 1 -0.3633 -1.0240 0.0876 30 1 -0.3633 0.5878 0.8430 31 1 -0.3634 0.4361 -0.9305 32 1 2.8812 3.6000 0.9387 33 1 3.7197 2.7589 3.5013 34 1 2.0435 3.3451 3.6236 35 1 2.7250 5.5027 2.6083 36 1 4.4010 4.9158 2.4864 37 1 7.9826 4.9731 3.7906 38 1 1.6969 5.7156 4.6885 39 1 3.5899 7.3450 6.4162 40 1 3.3107 7.7692 4.7066 41 1 0.7731 7.3844 5.4735 42 1 1.5905 8.9521 5.5953 43 1 0.2909 8.1179 7.6668 44 1 1.9318 8.7376 7.9210 45 1 1.2760 6.5517 9.1343 46 1 2.8275 6.5815 8.2783 47 1 0.4697 5.6598 6.7242 48 1 1.0585 4.5865 8.0211 49 1 2.3667 3.9315 6.1615 50 1 3.4297 5.0538 7.0306 51 1 4.1965 0.9247 -0.2079 52 1 2.7766 3.1086 -1.9544 53 1 4.5830 2.7364 -1.9405 54 1 4.0986 0.3577 -2.6783 55 1 2.2922 0.7299 -2.6922 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277376142.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:01 Heat of formation + Delta-G solvation = -62.145002 kcal Electronic energy + Delta-G solvation = -31214.883232 eV Core-core repulsion = 27252.370737 eV Total energy + Delta-G solvation = -3962.512495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.23396 -40.22258 -38.86492 -37.49183 -37.19904 -35.54803 -33.87234 -32.91182 -32.10684 -30.44219 -28.87689 -26.99608 -26.19097 -25.50633 -24.55970 -23.22445 -22.82858 -22.45990 -21.38698 -21.23817 -19.99481 -18.98234 -18.18418 -17.92741 -17.27248 -16.99247 -16.86051 -16.35996 -16.08924 -15.99816 -15.61008 -15.53294 -15.29787 -15.00723 -14.94684 -14.49791 -14.40337 -14.01718 -13.89277 -13.84000 -13.75279 -13.50412 -12.99796 -12.89360 -12.66435 -12.62198 -12.42991 -12.38381 -12.22348 -12.10308 -11.81257 -11.75888 -11.66881 -11.42220 -11.39128 -11.31249 -11.21474 -11.14868 -11.09325 -10.88791 -10.52100 -10.34423 -10.12089 -8.75418 -8.20995 -5.45073 1.35333 1.47173 1.49211 1.54529 1.99797 2.46051 2.48355 3.00164 3.20799 3.38085 3.57218 3.77458 3.81711 3.84785 4.01062 4.04147 4.13699 4.17629 4.19185 4.25605 4.36805 4.39648 4.43462 4.51237 4.51719 4.57048 4.57302 4.59453 4.67634 4.79604 4.81922 4.85191 4.98621 5.00290 5.01360 5.07609 5.12757 5.14310 5.15833 5.26889 5.29400 5.37628 5.39445 5.44367 5.45239 5.47739 5.63164 5.70045 5.76839 5.97713 5.98684 6.27344 6.54432 7.03863 7.20683 7.70562 8.12359 8.99324 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010749 B = 0.003442 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.230277 B = 8133.485734 C = 9737.186902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.380 6.380 3 C 0.117 3.883 4 H 0.121 0.879 5 C 0.485 3.515 6 O -0.582 6.582 7 N -0.707 5.707 8 C 0.117 3.883 9 C 0.144 3.856 10 N -0.605 5.605 11 C -0.253 4.253 12 H 0.035 0.965 13 C -0.009 4.009 14 N -0.933 5.933 15 Si 0.911 3.089 16 H -0.303 1.303 17 H -0.299 1.299 18 H -0.230 1.230 19 C 0.178 3.822 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.110 4.110 23 C -0.117 4.117 24 C -0.104 4.104 25 C -0.117 4.117 26 C -0.184 4.184 27 C -0.155 4.155 28 C -0.148 4.148 29 H 0.098 0.902 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.025 0.975 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.034 0.966 50 H 0.035 0.965 51 H 0.086 0.914 52 H 0.122 0.878 53 H 0.105 0.895 54 H 0.102 0.898 55 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.027 1.908 -11.090 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.298 6.298 3 C 0.056 3.944 4 H 0.138 0.862 5 C 0.271 3.729 6 O -0.461 6.461 7 N -0.361 5.361 8 C -0.010 4.010 9 C 0.018 3.982 10 N -0.327 5.327 11 C -0.383 4.383 12 H 0.053 0.947 13 C -0.206 4.206 14 N -0.575 5.575 15 Si 0.738 3.262 16 H -0.231 1.231 17 H -0.226 1.226 18 H -0.152 1.152 19 C 0.074 3.926 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.147 4.147 23 C -0.155 4.155 24 C -0.142 4.142 25 C -0.155 4.155 26 C -0.202 4.202 27 C -0.192 4.192 28 C -0.185 4.185 29 H 0.116 0.884 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.250 0.750 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.057 0.943 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.104 0.896 52 H 0.140 0.860 53 H 0.123 0.877 54 H 0.120 0.880 55 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.921 1.163 -10.467 19.930 hybrid contribution 1.216 0.539 -0.136 1.337 sum -15.704 1.702 -10.603 19.025 Atomic orbital electron populations 1.23057 0.79272 1.04082 1.00844 1.87985 1.21630 1.25894 1.94280 1.21558 0.96169 0.87081 0.89629 0.86191 1.22020 0.76454 0.81483 0.92924 1.90679 1.53315 1.53835 1.48292 1.45923 1.66227 1.14398 1.09562 1.21897 0.98974 0.97970 0.82152 1.21365 0.98719 0.91278 0.86864 1.44291 1.05151 1.72345 1.10911 1.18350 0.82504 1.40983 0.96417 0.94699 1.25975 0.94739 0.99401 1.00528 1.70202 1.05156 1.39354 1.42833 0.86309 0.79598 0.81177 0.79152 1.23094 1.22569 1.15246 1.19566 0.89525 0.91903 0.91642 1.21613 0.97613 0.96230 0.99946 1.21296 0.96710 1.00519 0.96450 1.21868 1.01666 0.96567 0.94611 1.21318 1.00387 0.94708 0.99087 1.21235 0.97257 0.97660 0.98078 1.20804 0.98192 0.98691 0.97846 1.22015 0.95899 1.09374 0.92961 1.23271 1.04599 0.92217 0.99124 1.22965 1.04290 0.98243 0.92976 0.88368 0.94942 0.90920 0.75026 0.95635 0.92698 0.90775 0.93698 0.93069 0.91459 0.93907 0.93832 0.91380 0.91782 0.90580 0.92569 0.91188 0.94261 0.90513 0.91844 0.94742 0.94575 0.89560 0.85979 0.87688 0.87983 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.80 113.37 1.22 1.67 16 2 O -0.38 -10.21 9.84 -129.99 -1.28 -11.49 16 3 C 0.12 2.79 2.69 29.85 0.08 2.87 16 4 H 0.12 1.92 7.58 -2.39 -0.02 1.91 16 5 C 0.48 16.06 7.16 87.66 0.63 16.69 16 6 O -0.58 -25.41 16.51 15.95 0.26 -25.15 16 7 N -0.71 -21.75 5.52 -463.07 -2.55 -24.31 16 8 C 0.12 4.50 5.99 86.38 0.52 5.02 16 9 C 0.14 5.58 3.94 86.38 0.34 5.92 16 10 N -0.61 -26.61 1.93 -688.48 -1.33 -27.93 16 11 C -0.25 -13.76 8.88 84.03 0.75 -13.01 16 12 H 0.04 2.17 6.85 -2.91 -0.02 2.15 16 13 C -0.01 -0.49 4.99 84.86 0.42 -0.07 16 14 N -0.93 -57.47 13.97 21.65 0.30 -57.17 16 15 Si 0.91 42.60 26.28 68.60 1.80 44.40 16 16 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 17 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 18 H -0.23 -9.37 5.95 99.48 0.59 -8.77 16 19 C 0.18 6.47 2.12 43.13 0.09 6.57 16 20 C -0.11 -3.92 4.75 30.20 0.14 -3.78 16 21 C -0.11 -2.79 5.31 30.14 0.16 -2.63 16 22 C -0.11 -2.45 5.85 31.32 0.18 -2.27 16 23 C -0.12 -2.98 5.31 30.14 0.16 -2.82 16 24 C -0.10 -2.81 5.61 30.20 0.17 -2.64 16 25 C -0.12 -4.23 4.40 28.74 0.13 -4.11 16 26 C -0.18 -3.99 5.31 -10.80 -0.06 -4.05 16 27 C -0.16 -2.27 10.18 30.62 0.31 -1.96 16 28 C -0.15 -2.29 10.21 30.62 0.31 -1.98 16 29 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.41 9.68 8.47 -92.71 -0.79 8.90 16 33 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 2.37 8.06 -2.39 -0.02 2.35 16 36 H 0.04 1.88 4.58 -2.39 -0.01 1.87 16 37 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.07 2.16 7.18 -2.38 -0.02 2.14 16 39 H 0.04 1.64 6.98 -2.39 -0.02 1.62 16 40 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 41 H 0.07 1.54 6.63 -2.39 -0.02 1.53 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.04 1.19 6.63 -2.39 -0.02 1.18 16 47 H 0.08 1.82 6.98 -2.39 -0.02 1.81 16 48 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.04 1.54 6.10 -2.39 -0.01 1.52 16 51 H 0.09 2.37 8.13 -2.38 -0.02 2.35 16 52 H 0.12 1.21 8.07 -2.39 -0.02 1.19 16 53 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 54 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 55 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -75.10 420.38 2.72 -72.38 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.05 Total: 29.84 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 5.56 Total: -0.58 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -3.58 Total: -109.41 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.02 Total: -36.63 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.80 Total: 44.40 kcal Total: -75.10 2.72 -72.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277376142.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.233 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds