Wall clock time and date at job start Tue Mar 31 2020 21:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46866 * 2 1 4 4 C 1.42902 * 113.99647 * 175.20589 * 3 2 1 5 5 H 1.08999 * 109.47297 * 330.56775 * 4 3 2 6 6 C 1.52998 * 109.47005 * 210.56357 * 4 3 2 7 7 C 1.50699 * 109.47128 * 65.00595 * 6 4 3 8 8 O 1.21285 * 119.99962 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00406 * 179.97438 * 7 6 4 10 10 C 1.47580 * 125.67592 * 359.68951 * 9 7 6 11 11 C 1.55446 * 104.91160 * 156.08947 * 10 9 7 12 12 C 1.53495 * 101.29620 * 35.63614 * 11 10 9 13 13 C 1.53466 * 111.81982 * 204.12692 * 12 11 10 14 14 C 1.54630 * 102.74670 * 272.84436 * 13 12 11 15 15 N 1.47164 * 107.33924 * 339.33499 * 14 13 12 16 16 C 1.36933 * 125.59772 * 179.06711 * 15 14 13 17 17 H 1.08000 * 120.00305 * 186.73161 * 16 15 14 18 18 C 1.38819 * 120.00158 * 6.72915 * 16 15 14 19 19 N 1.31627 * 119.99695 * 7.93911 * 18 16 15 20 20 Si 1.86797 * 120.00117 * 187.93372 * 18 16 15 21 21 H 1.48498 * 109.46886 * 94.98858 * 20 18 16 22 22 H 1.48499 * 109.47054 * 214.98617 * 20 18 16 23 23 H 1.48498 * 109.46996 * 334.99010 * 20 18 16 24 24 C 1.47755 * 108.79877 * 359.08667 * 15 14 13 25 25 C 1.47452 * 125.67911 * 179.97438 * 9 7 6 26 26 C 1.53001 * 109.46937 * 90.57005 * 4 3 2 27 27 C 1.52998 * 109.47644 * 64.82654 * 26 4 3 28 28 C 1.53002 * 109.47008 * 184.82910 * 26 4 3 29 29 H 1.08992 * 109.47251 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47343 * 300.00667 * 1 2 3 31 31 H 1.09002 * 109.47175 * 60.00007 * 1 2 3 32 32 H 1.08994 * 109.47183 * 239.99781 * 2 1 3 33 33 H 1.08996 * 109.47037 * 119.99585 * 2 1 3 34 34 H 1.09003 * 109.47473 * 184.99941 * 6 4 3 35 35 H 1.08998 * 109.47425 * 305.00503 * 6 4 3 36 36 H 1.09002 * 110.32728 * 275.07805 * 10 9 7 37 37 H 1.09004 * 110.32926 * 37.30201 * 10 9 7 38 38 H 1.08995 * 111.23954 * 277.57190 * 11 10 9 39 39 H 1.09006 * 110.96283 * 153.57852 * 11 10 9 40 40 H 1.09003 * 110.75301 * 31.15298 * 13 12 11 41 41 H 1.08999 * 110.76120 * 154.34063 * 13 12 11 42 42 H 1.08999 * 109.87124 * 98.77521 * 14 13 12 43 43 H 1.08997 * 109.87035 * 219.90231 * 14 13 12 44 44 H 0.96998 * 119.99551 * 179.97438 * 19 18 16 45 45 H 1.09002 * 110.39624 * 263.54410 * 24 15 14 46 46 H 1.09006 * 110.38885 * 141.14321 * 24 15 14 47 47 H 1.08996 * 109.99693 * 301.54158 * 25 9 7 48 48 H 1.09008 * 109.99247 * 62.82784 * 25 9 7 49 49 H 1.09006 * 109.46944 * 304.82472 * 26 4 3 50 50 H 1.08998 * 109.47484 * 180.02562 * 27 26 4 51 51 H 1.09006 * 109.47099 * 59.99913 * 27 26 4 52 52 H 1.09005 * 109.46872 * 300.00497 * 27 26 4 53 53 H 1.09002 * 109.47114 * 293.23128 * 28 26 4 54 54 H 1.08996 * 109.47113 * 53.23566 * 28 26 4 55 55 H 1.09000 * 109.47212 * 173.23693 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4265 1.4617 0.1091 5 1 3.8173 0.6130 0.6705 6 6 3.7792 2.7605 0.8368 7 6 3.2745 2.6946 2.2552 8 8 2.6899 1.7063 2.6455 9 7 3.4728 3.7339 3.0900 10 6 4.1705 4.9893 2.7509 11 6 3.6145 6.0393 3.7533 12 6 3.4306 5.1834 5.0141 13 6 2.3760 5.7772 5.9578 14 6 3.2027 6.7621 6.8167 15 7 4.6119 6.3483 6.7244 16 6 5.6681 6.9755 7.3296 17 1 6.6785 6.6607 7.1144 18 6 5.4400 8.0160 8.2198 19 7 4.2125 8.2976 8.6024 20 14 6.8752 9.0163 8.8747 21 1 7.0486 10.2353 8.0446 22 1 6.6038 9.4095 10.2808 23 1 8.1141 8.1994 8.8194 24 6 4.7001 5.1453 5.8711 25 6 3.0339 3.8034 4.4960 26 6 4.0459 1.4766 -1.2898 27 6 3.5911 2.7326 -2.0357 28 6 5.5714 1.4776 -1.1722 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 4.8613 2.8919 0.8420 35 1 3.3135 3.6022 0.3242 36 1 5.2464 4.8714 2.8801 37 1 3.9413 5.2853 1.7272 38 1 2.6616 6.4443 3.4128 39 1 4.3377 6.8369 3.9237 40 1 1.6079 6.3069 5.3943 41 1 1.9306 4.9993 6.5779 42 1 3.0881 7.7755 6.4320 43 1 2.8708 6.7177 7.8540 44 1 4.0532 9.0245 9.2246 45 1 4.7172 4.2446 6.4848 46 1 5.5868 5.1923 5.2389 47 1 1.9527 3.6794 4.5555 48 1 3.5304 3.0285 5.0802 49 1 3.7244 0.5915 -1.8390 50 1 4.0320 2.7430 -3.0325 51 1 3.9126 3.6177 -1.4866 52 1 2.5043 2.7319 -2.1195 53 1 5.9012 2.4180 -0.7306 54 1 5.8875 0.6484 -0.5393 55 1 6.0123 1.3671 -2.1629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277516034.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:52 Heat of formation + Delta-G solvation = -86.848404 kcal Electronic energy + Delta-G solvation = -31069.303211 eV Core-core repulsion = 27105.719496 eV Total energy + Delta-G solvation = -3963.583715 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.54989 -40.31398 -39.02329 -37.08943 -36.25630 -34.49591 -32.40948 -31.98996 -30.89283 -30.75960 -29.61885 -27.98763 -27.40595 -25.87708 -24.57102 -23.94751 -23.67725 -22.11260 -20.79765 -20.27492 -19.91241 -18.83791 -18.02265 -17.84190 -17.03356 -16.76033 -16.73356 -16.37144 -15.96029 -15.69155 -15.38878 -15.01040 -14.81717 -14.73964 -14.57407 -14.05424 -13.97353 -13.85860 -13.83252 -13.56583 -13.49017 -13.04570 -13.04311 -12.98468 -12.91367 -12.79907 -12.68371 -12.59120 -12.43096 -12.41048 -12.07648 -12.00534 -11.82119 -11.76654 -11.70100 -11.55262 -11.43056 -11.39673 -11.22438 -10.80504 -10.69826 -10.28897 -9.62909 -8.86652 -7.81819 -5.19615 1.47508 1.48653 1.57726 1.70052 1.99754 2.50916 2.79841 3.32040 3.39213 3.58262 3.62226 3.70187 3.76422 3.90149 4.03807 4.15962 4.21033 4.24709 4.27831 4.31572 4.37043 4.38053 4.45105 4.51849 4.54848 4.60284 4.64107 4.72186 4.74566 4.78401 4.85899 4.87468 4.92131 4.93252 5.00647 5.04284 5.06371 5.07384 5.09495 5.12374 5.23403 5.25864 5.27448 5.34821 5.37334 5.46958 5.48294 5.50711 5.67459 5.80169 6.22095 6.38642 6.58859 7.11341 7.20799 7.78839 8.44320 9.26723 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.002354 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.865790 B =11893.094616 C =12680.375443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 O -0.390 6.390 4 C 0.110 3.890 5 H 0.051 0.949 6 C -0.130 4.130 7 C 0.524 3.476 8 O -0.580 6.580 9 N -0.619 5.619 10 C 0.105 3.895 11 C -0.107 4.107 12 C -0.073 4.073 13 C -0.117 4.117 14 C 0.184 3.816 15 N -0.621 5.621 16 C -0.238 4.238 17 H 0.082 0.918 18 C -0.066 4.066 19 N -0.950 5.950 20 Si 0.976 3.024 21 H -0.286 1.286 22 H -0.298 1.298 23 H -0.267 1.267 24 C 0.150 3.850 25 C 0.134 3.866 26 C -0.111 4.111 27 C -0.143 4.143 28 C -0.149 4.149 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.034 0.966 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.002 0.998 43 H 0.019 0.981 44 H 0.246 0.754 45 H 0.011 0.989 46 H 0.049 0.951 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.072 0.928 50 H 0.062 0.938 51 H 0.065 0.935 52 H 0.048 0.952 53 H 0.068 0.932 54 H 0.053 0.947 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 -12.988 -24.247 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 O -0.310 6.310 4 C 0.051 3.949 5 H 0.069 0.931 6 C -0.170 4.170 7 C 0.314 3.686 8 O -0.459 6.459 9 N -0.353 5.353 10 C -0.017 4.017 11 C -0.145 4.145 12 C -0.074 4.074 13 C -0.155 4.155 14 C 0.059 3.941 15 N -0.347 5.347 16 C -0.367 4.367 17 H 0.100 0.900 18 C -0.260 4.260 19 N -0.599 5.599 20 Si 0.805 3.195 21 H -0.213 1.213 22 H -0.225 1.225 23 H -0.192 1.192 24 C 0.025 3.975 25 C 0.010 3.990 26 C -0.129 4.129 27 C -0.200 4.200 28 C -0.206 4.206 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.020 0.980 43 H 0.037 0.963 44 H 0.055 0.945 45 H 0.029 0.971 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.067 0.933 53 H 0.086 0.914 54 H 0.072 0.928 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.924 -13.272 -23.971 27.467 hybrid contribution 0.575 0.456 1.358 1.544 sum -1.349 -12.816 -22.613 26.027 Atomic orbital electron populations 1.21711 0.93460 1.02944 1.02177 1.22474 0.95914 0.83562 0.99597 1.87853 1.21600 1.27121 1.94422 1.21902 0.81451 0.96381 0.95123 0.93055 1.21990 1.04284 1.00807 0.89877 1.20905 0.78697 0.80944 0.88034 1.90665 1.43948 1.32995 1.78334 1.48796 1.57032 1.17651 1.11812 1.22631 0.96966 0.81770 1.00349 1.22533 1.02441 0.96957 0.92604 1.21399 0.96010 0.94340 0.95661 1.22546 0.96940 0.98652 0.97375 1.20983 0.83101 0.93702 0.96349 1.44851 1.03556 1.29497 1.56811 1.19436 0.87153 1.11758 1.18373 0.90012 1.25641 0.99042 1.01386 0.99884 1.70189 1.20000 1.32481 1.37248 0.85088 0.78900 0.78789 0.76745 1.21319 1.22500 1.19211 1.21440 0.95950 0.88692 0.91425 1.21503 0.99440 0.95956 0.82077 1.21557 0.96483 1.00039 0.94866 1.21806 1.01129 0.96879 1.00213 1.21893 0.93492 1.02535 1.02720 0.89555 0.93755 0.91629 0.92348 0.94756 0.85209 0.86430 0.90163 0.87465 0.89660 0.90370 0.89688 0.91628 0.97979 0.96293 0.94490 0.97094 0.93234 0.91685 0.92553 0.91004 0.91856 0.91635 0.93261 0.91352 0.92830 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.06 1.23 6.53 71.98 0.47 1.70 16 3 O -0.39 -9.04 8.75 -135.19 -1.18 -10.22 16 4 C 0.11 2.07 1.42 30.59 0.04 2.11 16 5 H 0.05 1.11 7.52 -2.39 -0.02 1.09 16 6 C -0.13 -2.30 3.62 29.85 0.11 -2.19 16 7 C 0.52 13.92 7.73 87.66 0.68 14.60 16 8 O -0.58 -20.10 15.75 10.75 0.17 -19.93 16 9 N -0.62 -15.85 3.34 -812.46 -2.72 -18.57 16 10 C 0.10 2.12 6.63 87.01 0.58 2.70 16 11 C -0.11 -2.84 5.99 31.60 0.19 -2.65 16 12 C -0.07 -2.33 0.61 -51.90 -0.03 -2.36 16 13 C -0.12 -4.19 5.85 31.31 0.18 -4.01 16 14 C 0.18 8.92 5.41 86.81 0.47 9.39 16 15 N -0.62 -31.17 3.41 -693.48 -2.36 -33.54 16 16 C -0.24 -13.12 10.26 84.04 0.86 -12.26 16 17 H 0.08 4.30 7.84 -2.91 -0.02 4.28 16 18 C -0.07 -3.75 5.44 84.86 0.46 -3.29 16 19 N -0.95 -57.10 10.49 21.65 0.23 -56.87 16 20 Si 0.98 45.38 29.56 68.60 2.03 47.40 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 C 0.15 5.94 6.10 86.21 0.53 6.47 16 25 C 0.13 3.99 6.14 86.08 0.53 4.51 16 26 C -0.11 -1.46 2.91 -10.79 -0.03 -1.49 16 27 C -0.14 -1.72 8.61 71.98 0.62 -1.10 16 28 C -0.15 -1.52 8.78 71.98 0.63 -0.89 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.93 7.92 -2.39 -0.02 0.91 16 33 H 0.03 0.79 7.98 -2.39 -0.02 0.77 16 34 H 0.13 1.62 6.49 -2.39 -0.02 1.60 16 35 H 0.12 1.76 6.37 -2.39 -0.02 1.74 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.11 1.49 7.49 -2.38 -0.02 1.47 16 38 H 0.08 2.06 7.85 -2.39 -0.02 2.04 16 39 H 0.08 2.35 8.00 -2.38 -0.02 2.33 16 40 H 0.08 2.68 7.80 -2.39 -0.02 2.66 16 41 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 42 H 0.00 0.11 7.95 -2.39 -0.02 0.09 16 43 H 0.02 1.07 6.95 -2.39 -0.02 1.05 16 44 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 45 H 0.01 0.47 7.79 -2.39 -0.02 0.45 16 46 H 0.05 1.85 7.96 -2.38 -0.02 1.83 16 47 H 0.06 1.99 7.88 -2.39 -0.02 1.97 16 48 H 0.06 1.81 7.62 -2.38 -0.02 1.79 16 49 H 0.07 0.96 7.92 -2.38 -0.02 0.95 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.06 0.68 6.46 -2.38 -0.02 0.66 16 52 H 0.05 0.73 7.82 -2.38 -0.02 0.71 16 53 H 0.07 0.59 6.79 -2.39 -0.02 0.58 16 54 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 55 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -71.84 418.68 4.02 -67.82 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.83 Total: 14.52 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 7.02 Total: 9.38 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -4.85 Total: -108.98 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.01 Total: -30.15 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -71.84 4.02 -67.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277516034.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.031 kcal (2) G-P(sol) polarization free energy of solvation -71.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds