Wall clock time and date at job start Tue Mar 31 2020 21:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.46797 * 2 1 4 4 C 1.42905 * 113.99481 * 185.02903 * 3 2 1 5 5 H 1.08991 * 109.47266 * 13.41496 * 4 3 2 6 6 C 1.53002 * 109.46949 * 133.41472 * 4 3 2 7 7 C 1.50696 * 109.47191 * 294.99898 * 6 4 3 8 8 O 1.21281 * 119.99918 * 359.97438 * 7 6 4 9 9 N 1.34780 * 120.00275 * 180.02562 * 7 6 4 10 10 C 1.47606 * 126.91813 * 0.02562 * 9 7 6 11 11 C 1.54353 * 107.05374 * 204.96659 * 10 9 7 12 12 C 1.53089 * 104.72457 * 357.72809 * 11 10 9 13 13 C 1.53639 * 111.78239 * 100.54398 * 12 11 10 14 14 C 1.55180 * 101.41628 * 155.67950 * 13 12 11 15 15 N 1.47559 * 105.00970 * 324.52282 * 14 13 12 16 16 C 1.36939 * 125.67581 * 203.81950 * 15 14 13 17 17 H 1.07999 * 120.00024 * 164.01179 * 16 15 14 18 18 C 1.38817 * 119.99929 * 344.01686 * 16 15 14 19 19 N 1.31615 * 119.99716 * 351.05437 * 18 16 15 20 20 Si 1.86800 * 119.99962 * 171.05422 * 18 16 15 21 21 H 1.48494 * 109.46902 * 94.95958 * 20 18 16 22 22 H 1.48506 * 109.47039 * 214.95928 * 20 18 16 23 23 H 1.48499 * 109.47071 * 334.95808 * 20 18 16 24 24 C 1.47412 * 108.65342 * 23.85323 * 15 14 13 25 25 C 1.48406 * 126.91791 * 179.97438 * 9 7 6 26 26 C 1.53001 * 109.47130 * 253.40754 * 4 3 2 27 27 C 1.53003 * 109.46655 * 53.85636 * 26 4 3 28 28 C 1.53000 * 109.47094 * 173.85381 * 26 4 3 29 29 H 1.08998 * 109.46935 * 299.99701 * 1 2 3 30 30 H 1.08998 * 109.46714 * 59.99728 * 1 2 3 31 31 H 1.08998 * 109.46519 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46935 * 240.00299 * 2 1 3 33 33 H 1.08995 * 109.47145 * 120.00011 * 2 1 3 34 34 H 1.08997 * 109.47589 * 174.99541 * 6 4 3 35 35 H 1.09003 * 109.47221 * 54.99346 * 6 4 3 36 36 H 1.09006 * 109.91684 * 85.61812 * 10 9 7 37 37 H 1.09000 * 109.92043 * 324.32097 * 10 9 7 38 38 H 1.09001 * 110.40590 * 116.57021 * 11 10 9 39 39 H 1.08998 * 110.40789 * 238.88131 * 11 10 9 40 40 H 1.09007 * 111.03663 * 273.71833 * 13 12 11 41 41 H 1.08999 * 111.03585 * 37.64826 * 13 12 11 42 42 H 1.09000 * 110.33796 * 205.63643 * 14 13 12 43 43 H 1.09002 * 110.41913 * 83.44864 * 14 13 12 44 44 H 0.96997 * 119.99764 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.98851 * 238.53920 * 24 15 14 46 46 H 1.08994 * 110.01927 * 117.24651 * 24 15 14 47 47 H 1.09010 * 110.67909 * 260.85297 * 25 9 7 48 48 H 1.08999 * 110.68972 * 24.02773 * 25 9 7 49 49 H 1.08995 * 109.47575 * 293.85846 * 26 4 3 50 50 H 1.09007 * 109.47126 * 53.87905 * 27 26 4 51 51 H 1.09003 * 109.46863 * 173.87786 * 27 26 4 52 52 H 1.08998 * 109.47431 * 293.88146 * 27 26 4 53 53 H 1.09000 * 109.47257 * 60.00686 * 28 26 4 54 54 H 1.09002 * 109.47134 * 180.02562 * 28 26 4 55 55 H 1.08995 * 109.47290 * 300.00641 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4618 -0.1144 5 1 3.8449 0.5019 -0.4167 6 6 3.7695 2.5210 -1.1638 7 6 3.2964 2.0587 -2.5178 8 8 2.7399 0.9872 -2.6323 9 7 3.4926 2.8354 -3.6016 10 6 4.1491 4.1569 -3.6383 11 6 3.5972 4.9024 -4.8721 12 6 2.6507 3.9017 -5.5402 13 6 1.1807 4.1947 -5.2028 14 6 0.4532 3.5452 -6.4099 15 7 1.3447 3.7763 -7.5628 16 6 0.9596 3.8067 -8.8766 17 1 1.6158 4.2312 -9.6220 18 6 -0.2742 3.2919 -9.2503 19 7 -0.9972 2.6189 -8.3805 20 14 -0.9083 3.5542 -10.9877 21 1 -0.5603 2.3779 -11.8245 22 1 -2.3836 3.7205 -10.9564 23 1 -0.2849 4.7730 -11.5633 24 6 2.7189 3.9683 -7.0652 25 6 3.0929 2.5336 -4.9987 26 6 4.0152 1.8727 1.2365 27 6 3.5447 0.8960 2.3162 28 6 5.5429 1.8465 1.1559 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.8486 2.6721 -1.1881 35 1 3.2769 3.4591 -0.9077 36 1 5.2281 4.0330 -3.7313 37 1 3.9134 4.7140 -2.7316 38 1 3.0516 5.7945 -4.5644 39 1 4.4085 5.1688 -5.5495 40 1 0.8910 3.7158 -4.2674 41 1 0.9944 5.2679 -5.1650 42 1 -0.5111 4.0259 -6.5744 43 1 0.3193 2.4764 -6.2430 44 1 -1.8592 2.2589 -8.6417 45 1 3.0963 4.9415 -7.3791 46 1 3.3668 3.1779 -7.4440 47 1 3.9407 2.1517 -5.5676 48 1 2.2646 1.8254 -5.0179 49 1 3.6818 2.8796 1.4872 50 1 3.7828 -0.1235 2.0127 51 1 4.0489 1.1226 3.2557 52 1 2.4672 0.9931 2.4494 53 1 5.8781 2.5423 0.3868 54 1 5.9626 2.1388 2.1185 55 1 5.8763 0.8396 0.9052 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277516035.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:56 Heat of formation + Delta-G solvation = -89.586543 kcal Electronic energy + Delta-G solvation = -31350.937472 eV Core-core repulsion = 27387.235022 eV Total energy + Delta-G solvation = -3963.702450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51691 -40.27692 -38.97362 -37.12783 -36.04020 -34.47824 -32.67631 -32.08945 -30.99330 -30.79058 -29.60734 -27.89062 -27.35444 -26.07824 -24.47632 -23.67709 -23.44785 -22.29996 -21.01387 -20.30759 -19.97629 -18.79383 -18.02648 -17.92352 -17.01803 -16.79331 -16.73289 -16.45824 -15.86016 -15.66155 -15.24354 -15.11811 -15.03501 -14.69586 -14.50011 -14.28376 -14.03693 -13.86405 -13.56546 -13.41915 -13.38072 -13.05092 -12.99513 -12.96678 -12.90208 -12.86498 -12.80285 -12.58864 -12.53014 -12.39997 -12.08196 -11.99819 -11.92501 -11.87254 -11.66422 -11.60581 -11.47458 -11.42960 -11.21622 -10.77041 -10.69151 -10.27530 -9.63777 -8.83170 -7.90081 -5.27883 1.44012 1.45894 1.55861 1.70541 1.99332 2.48450 2.79803 3.27662 3.42088 3.57056 3.69503 3.74890 3.77157 3.81851 4.05088 4.13866 4.22661 4.25955 4.28189 4.33135 4.39181 4.40943 4.46973 4.51180 4.53895 4.59923 4.61296 4.74264 4.75440 4.80391 4.84742 4.87308 4.92513 4.93031 5.00918 5.01866 5.02941 5.07781 5.08661 5.10356 5.18701 5.22420 5.28124 5.35449 5.42508 5.45189 5.46299 5.48047 5.56063 5.67156 6.18672 6.39069 6.64876 7.04884 7.23066 7.73889 8.43348 9.22597 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.002634 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.785006 B =10626.693029 C =11784.233929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.064 3.936 3 O -0.392 6.392 4 C 0.106 3.894 5 H 0.053 0.947 6 C -0.132 4.132 7 C 0.522 3.478 8 O -0.586 6.586 9 N -0.622 5.622 10 C 0.102 3.898 11 C -0.111 4.111 12 C -0.071 4.071 13 C -0.109 4.109 14 C 0.184 3.816 15 N -0.623 5.623 16 C -0.244 4.244 17 H 0.083 0.917 18 C -0.067 4.067 19 N -0.951 5.951 20 Si 0.979 3.021 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.263 1.263 24 C 0.146 3.854 25 C 0.128 3.872 26 C -0.105 4.105 27 C -0.145 4.145 28 C -0.147 4.147 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.061 0.939 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.018 0.982 43 H -0.014 1.014 44 H 0.247 0.753 45 H 0.049 0.951 46 H 0.020 0.980 47 H 0.075 0.925 48 H 0.038 0.962 49 H 0.083 0.917 50 H 0.047 0.953 51 H 0.069 0.931 52 H 0.049 0.951 53 H 0.070 0.930 54 H 0.071 0.929 55 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.098 3.179 22.766 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.012 4.012 3 O -0.311 6.311 4 C 0.048 3.952 5 H 0.071 0.929 6 C -0.172 4.172 7 C 0.313 3.687 8 O -0.466 6.466 9 N -0.356 5.356 10 C -0.019 4.019 11 C -0.149 4.149 12 C -0.073 4.073 13 C -0.148 4.148 14 C 0.059 3.941 15 N -0.350 5.350 16 C -0.373 4.373 17 H 0.100 0.900 18 C -0.261 4.261 19 N -0.599 5.599 20 Si 0.807 3.193 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.187 1.187 24 C 0.021 3.979 25 C 0.005 3.995 26 C -0.123 4.123 27 C -0.202 4.202 28 C -0.204 4.204 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.037 0.963 43 H 0.004 0.996 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.038 0.962 47 H 0.093 0.907 48 H 0.057 0.943 49 H 0.101 0.899 50 H 0.066 0.934 51 H 0.088 0.912 52 H 0.069 0.931 53 H 0.089 0.911 54 H 0.090 0.910 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.534 2.671 22.697 27.633 hybrid contribution -1.112 -0.877 -1.522 2.080 sum 14.422 1.794 21.174 25.682 Atomic orbital electron populations 1.21718 0.93981 1.02750 1.01986 1.22492 0.95470 0.83669 0.99559 1.87808 1.21934 1.27047 1.94344 1.22001 0.81461 0.97607 0.94164 0.92894 1.22070 1.04826 1.01478 0.88795 1.21027 0.78124 0.83429 0.86130 1.90676 1.44717 1.24741 1.86455 1.49063 1.58836 1.21103 1.06559 1.22471 0.97954 0.81580 0.99918 1.22393 0.98742 0.97261 0.96463 1.21452 0.95725 0.95475 0.94635 1.22596 0.94770 1.00618 0.96766 1.21084 0.92652 0.94800 0.85575 1.44892 1.03470 1.84477 1.02125 1.19429 1.01619 1.31937 0.84320 0.89952 1.25823 0.99086 0.99148 1.01993 1.70193 1.13443 1.40436 1.35818 0.85059 0.76936 0.78113 0.79189 1.21402 1.22162 1.18737 1.21310 0.86529 0.98533 0.91499 1.22075 0.98722 0.96446 0.82286 1.21500 0.96614 1.00875 0.93341 1.21808 1.01237 0.98599 0.98604 1.21897 0.93067 1.02280 1.03186 0.91204 0.94406 0.89914 0.94965 0.92104 0.84556 0.86736 0.88571 0.88140 0.89021 0.88235 0.92431 0.90289 0.96305 0.99578 0.94445 0.93337 0.96156 0.90692 0.94315 0.89853 0.93367 0.91155 0.93142 0.91094 0.91004 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 10.28 71.98 0.74 -2.79 16 2 C 0.06 1.64 5.77 71.98 0.42 2.06 16 3 O -0.39 -10.36 8.69 -135.21 -1.17 -11.53 16 4 C 0.11 2.17 1.39 30.60 0.04 2.21 16 5 H 0.05 1.23 7.40 -2.39 -0.02 1.22 16 6 C -0.13 -2.42 4.37 29.85 0.13 -2.29 16 7 C 0.52 15.06 7.77 87.66 0.68 15.74 16 8 O -0.59 -22.73 14.42 10.74 0.15 -22.57 16 9 N -0.62 -16.60 3.31 -810.18 -2.68 -19.27 16 10 C 0.10 1.69 6.77 86.63 0.59 2.27 16 11 C -0.11 -2.25 6.06 31.08 0.19 -2.06 16 12 C -0.07 -2.32 0.68 -51.79 -0.04 -2.36 16 13 C -0.11 -4.20 5.97 31.56 0.19 -4.01 16 14 C 0.18 9.66 5.25 86.92 0.46 10.12 16 15 N -0.62 -32.90 3.41 -693.07 -2.36 -35.26 16 16 C -0.24 -13.99 10.21 84.03 0.86 -13.13 16 17 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 18 C -0.07 -3.95 5.39 84.86 0.46 -3.49 16 19 N -0.95 -60.19 10.92 21.65 0.24 -59.95 16 20 Si 0.98 46.87 29.56 68.60 2.03 48.90 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.15 5.86 6.43 86.14 0.55 6.41 16 25 C 0.13 4.35 5.88 86.23 0.51 4.86 16 26 C -0.10 -1.45 2.69 -10.79 -0.03 -1.48 16 27 C -0.15 -2.03 7.88 71.98 0.57 -1.46 16 28 C -0.15 -1.41 8.97 71.98 0.65 -0.76 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.03 0.99 7.05 -2.39 -0.02 0.97 16 33 H 0.06 1.25 6.62 -2.39 -0.02 1.24 16 34 H 0.14 1.52 6.39 -2.39 -0.02 1.50 16 35 H 0.11 1.80 7.91 -2.39 -0.02 1.78 16 36 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.10 1.14 7.55 -2.39 -0.02 1.12 16 38 H 0.09 1.68 7.62 -2.39 -0.02 1.66 16 39 H 0.10 1.67 7.81 -2.39 -0.02 1.66 16 40 H 0.06 2.23 8.00 -2.38 -0.02 2.21 16 41 H 0.08 2.77 7.80 -2.39 -0.02 2.75 16 42 H 0.02 1.09 7.35 -2.39 -0.02 1.07 16 43 H -0.01 -0.83 7.88 -2.39 -0.02 -0.85 16 44 H 0.25 15.17 8.31 -92.71 -0.77 14.39 16 45 H 0.05 1.77 7.78 -2.39 -0.02 1.75 16 46 H 0.02 0.84 7.63 -2.39 -0.02 0.82 16 47 H 0.07 2.42 7.82 -2.38 -0.02 2.40 16 48 H 0.04 1.69 7.64 -2.39 -0.02 1.67 16 49 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.05 0.69 7.81 -2.38 -0.02 0.68 16 51 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.05 0.82 7.33 -2.39 -0.02 0.81 16 53 H 0.07 0.51 6.50 -2.39 -0.02 0.49 16 54 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 55 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -79.37 416.59 3.99 -75.37 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.83 Total: 14.49 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 6.95 Total: 9.83 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -4.80 Total: -114.49 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.02 Total: -34.11 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -79.37 3.99 -75.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277516035.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.213 kcal (2) G-P(sol) polarization free energy of solvation -79.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds