Wall clock time and date at job start Tue Mar 31 2020 22:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99530 * 2 1 4 4 C 1.53007 * 109.46863 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47113 * 185.09347 * 4 3 2 6 6 C 1.50694 * 110.01982 * 304.81977 * 5 4 3 7 7 O 1.21282 * 120.00417 * 113.82950 * 6 5 4 8 8 N 1.34777 * 120.00150 * 293.83351 * 6 5 4 9 9 C 1.46497 * 120.00259 * 184.48953 * 8 6 5 10 10 H 1.08998 * 109.20350 * 34.99778 * 9 8 6 11 11 C 1.50120 * 109.21093 * 154.36127 * 9 8 6 12 12 C 1.52529 * 105.41634 * 218.02649 * 11 9 8 13 13 C 1.46240 * 114.27877 * 270.59147 * 12 11 9 14 14 N 1.50170 * 107.52929 * 58.40806 * 13 12 11 15 15 C 1.36933 * 120.53867 * 109.61418 * 14 13 12 16 16 H 1.08003 * 120.00022 * 204.04603 * 15 14 13 17 17 C 1.38814 * 120.00091 * 24.04028 * 15 14 13 18 18 N 1.31616 * 119.99925 * 27.24525 * 17 15 14 19 19 Si 1.86802 * 119.99913 * 207.24367 * 17 15 14 20 20 H 1.48489 * 109.47288 * 94.99860 * 19 17 15 21 21 H 1.48506 * 109.46774 * 214.99906 * 19 17 15 22 22 H 1.48499 * 109.46917 * 334.99372 * 19 17 15 23 23 C 1.43439 * 118.92258 * 289.58623 * 14 13 12 24 24 C 1.54845 * 109.20593 * 275.64042 * 9 8 6 25 25 C 1.54267 * 110.06940 * 66.23887 * 5 4 3 26 26 C 1.54893 * 104.19240 * 142.91464 * 25 5 4 27 27 C 1.54878 * 102.75122 * 322.05642 * 26 25 5 28 28 C 1.53872 * 110.03119 * 183.42526 * 5 4 3 29 29 H 1.08998 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46611 * 299.99296 * 1 2 3 31 31 H 1.08992 * 109.47551 * 59.99535 * 1 2 3 32 32 H 1.09002 * 109.47443 * 60.00604 * 3 2 1 33 33 H 1.09004 * 109.47560 * 300.00037 * 3 2 1 34 34 H 1.09001 * 109.46795 * 65.09863 * 4 3 2 35 35 H 1.08996 * 109.46949 * 305.09649 * 4 3 2 36 36 H 0.97004 * 119.99874 * 4.48561 * 8 6 5 37 37 H 1.09000 * 110.24802 * 336.99171 * 11 9 8 38 38 H 1.08997 * 110.25158 * 99.05464 * 11 9 8 39 39 H 1.08998 * 108.52166 * 31.83296 * 12 11 9 40 40 H 1.09000 * 108.52284 * 149.35140 * 12 11 9 41 41 H 1.08997 * 109.84445 * 177.91186 * 13 12 11 42 42 H 1.09000 * 109.84740 * 298.90593 * 13 12 11 43 43 H 0.97000 * 119.99737 * 179.97438 * 18 17 15 44 44 H 1.09006 * 108.15763 * 213.28805 * 23 14 13 45 45 H 1.08999 * 108.15916 * 330.06614 * 23 14 13 46 46 H 1.08997 * 109.36041 * 320.99200 * 24 9 8 47 47 H 1.08995 * 109.36270 * 80.58505 * 24 9 8 48 48 H 1.08995 * 110.49075 * 24.23738 * 25 5 4 49 49 H 1.09000 * 110.48383 * 261.58865 * 25 5 4 50 50 H 1.09002 * 110.75210 * 203.73491 * 26 25 5 51 51 H 1.09007 * 110.75595 * 80.37449 * 26 25 5 52 52 H 1.08996 * 110.49162 * 156.62323 * 27 26 25 53 53 H 1.09005 * 110.48692 * 279.13333 * 27 26 25 54 54 H 1.09000 * 110.03165 * 121.38352 * 28 5 4 55 55 H 1.09002 * 110.07623 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1573 2.5767 0.1274 6 6 3.6360 3.4770 -0.9629 7 8 2.9390 4.4289 -0.6819 8 7 3.9443 3.2242 -2.2504 9 6 3.5206 4.1531 -3.3010 10 1 3.5580 5.1719 -2.9153 11 6 4.4529 4.0335 -4.4715 12 6 4.6283 5.4547 -4.9970 13 6 3.6466 5.8477 -6.0071 14 7 2.2839 5.7092 -5.3914 15 6 1.5415 6.8191 -5.0879 16 1 0.7780 6.7663 -4.3258 17 6 1.7701 8.0121 -5.7598 18 7 2.2581 7.9960 -6.9820 19 14 1.3850 9.6404 -4.9292 20 1 2.6154 10.1743 -4.2921 21 1 0.8920 10.6082 -5.9419 22 1 0.3412 9.4330 -3.8935 23 6 1.7724 4.3955 -5.1270 24 6 2.0675 3.8200 -3.7198 25 6 3.8303 3.1775 1.5102 26 6 5.1157 3.9470 1.9035 27 6 6.2418 3.0238 1.3760 28 6 5.6906 2.4790 0.0422 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 3.8631 0.7248 -0.9330 35 1 3.8514 0.5669 0.8399 36 1 4.4467 2.4273 -2.4813 37 1 5.4126 3.6293 -4.1496 38 1 4.0133 3.3986 -5.2406 39 1 4.5566 6.1457 -4.1571 40 1 5.6248 5.5433 -5.4297 41 1 3.8151 6.8829 -6.3038 42 1 3.7280 5.1948 -6.8761 43 1 2.4175 8.8296 -7.4516 44 1 0.6914 4.4176 -5.2654 45 1 2.1933 3.7123 -5.8646 46 1 1.9353 2.7382 -3.7365 47 1 1.3750 4.2556 -2.9997 48 1 3.6239 2.3862 2.2308 49 1 2.9837 3.8603 1.4389 50 1 5.1830 4.0588 2.9857 51 1 5.1503 4.9187 1.4109 52 1 7.1550 3.5942 1.2068 53 1 6.4264 2.2088 2.0760 54 1 6.0576 3.0826 -0.7879 55 1 5.9925 1.4399 -0.0900 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280775780.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:47 Heat of formation + Delta-G solvation = -94.901469 kcal Electronic energy + Delta-G solvation = -32063.349750 eV Core-core repulsion = 28099.416828 eV Total energy + Delta-G solvation = -3963.932922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.80185 -39.87574 -38.80425 -38.04799 -36.30325 -34.32922 -33.46720 -33.34026 -31.66669 -29.64391 -28.91704 -27.97691 -26.81741 -25.83665 -25.07041 -23.65682 -23.01467 -21.91111 -21.53236 -20.83932 -19.96626 -18.58007 -17.90813 -17.53199 -17.23387 -16.99833 -16.94229 -16.33850 -16.07755 -16.02164 -15.70836 -15.56627 -15.18810 -15.03164 -14.85461 -14.38266 -14.23266 -14.02531 -13.85667 -13.56572 -13.27108 -13.24711 -13.11480 -12.76726 -12.69110 -12.58416 -12.45447 -12.26264 -12.21138 -12.05136 -12.01591 -11.91334 -11.84293 -11.69138 -11.66353 -11.58600 -11.41912 -11.35864 -11.22319 -10.71828 -10.61146 -10.40584 -9.97049 -8.73594 -7.93328 -5.28024 1.39090 1.43170 1.51396 1.69567 2.24008 2.48539 2.69223 3.14895 3.42793 3.57789 3.58571 3.77549 3.90864 4.00496 4.03567 4.08274 4.19579 4.26580 4.33847 4.40686 4.43820 4.44215 4.47737 4.49234 4.53681 4.54641 4.62982 4.67611 4.78053 4.79274 4.83177 4.86750 4.96323 4.97162 5.02555 5.03719 5.06198 5.07460 5.17364 5.22071 5.22941 5.25355 5.35047 5.38086 5.42813 5.48000 5.62462 5.66328 5.69092 5.78805 6.10760 6.38124 6.66112 7.09316 7.36583 7.87004 8.34882 9.11606 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011999 B = 0.003353 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.950298 B = 8348.246836 C = 8942.616650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.058 3.942 4 C -0.092 4.092 5 C -0.071 4.071 6 C 0.515 3.485 7 O -0.585 6.585 8 N -0.713 5.713 9 C 0.168 3.832 10 H 0.044 0.956 11 C -0.106 4.106 12 C -0.124 4.124 13 C 0.146 3.854 14 N -0.600 5.600 15 C -0.258 4.258 16 H 0.048 0.952 17 C -0.038 4.038 18 N -0.915 5.915 19 Si 0.943 3.057 20 H -0.288 1.288 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.158 3.842 24 C -0.135 4.135 25 C -0.113 4.113 26 C -0.128 4.128 27 C -0.117 4.117 28 C -0.112 4.112 29 H 0.106 0.894 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.026 0.974 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.412 0.588 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.252 0.748 44 H 0.019 0.981 45 H 0.049 0.951 46 H 0.078 0.922 47 H 0.021 0.979 48 H 0.093 0.907 49 H 0.052 0.948 50 H 0.081 0.919 51 H 0.039 0.961 52 H 0.070 0.930 53 H 0.090 0.910 54 H 0.064 0.936 55 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.222 -19.456 15.460 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C -0.019 4.019 4 C -0.130 4.130 5 C -0.074 4.074 6 C 0.303 3.697 7 O -0.465 6.465 8 N -0.364 5.364 9 C 0.064 3.936 10 H 0.062 0.938 11 C -0.144 4.144 12 C -0.163 4.163 13 C 0.022 3.978 14 N -0.321 5.321 15 C -0.388 4.388 16 H 0.066 0.934 17 C -0.234 4.234 18 N -0.560 5.560 19 Si 0.772 3.228 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.029 3.971 24 C -0.177 4.177 25 C -0.151 4.151 26 C -0.165 4.165 27 C -0.154 4.154 28 C -0.150 4.150 29 H 0.125 0.875 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.250 0.750 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.037 0.963 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.040 0.960 48 H 0.112 0.888 49 H 0.071 0.929 50 H 0.100 0.900 51 H 0.058 0.942 52 H 0.089 0.911 53 H 0.109 0.891 54 H 0.082 0.918 55 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.861 -18.799 15.510 25.933 hybrid contribution -0.975 1.663 0.004 1.928 sum 7.887 -17.136 15.514 24.424 Atomic orbital electron populations 1.22910 0.79969 1.03998 1.00252 1.87787 1.20966 1.27881 1.95494 1.22590 0.95350 0.84359 0.99558 1.21598 0.91626 0.94201 1.05553 1.21428 0.98171 0.94132 0.93661 1.21129 0.78976 0.85144 0.84456 1.90704 1.39577 1.32782 1.83442 1.46247 1.57295 1.27070 1.05836 1.20762 0.93686 0.92053 0.87142 0.93798 1.21265 0.99349 0.97108 0.96649 1.20799 0.99600 0.96400 0.99512 1.20359 0.82768 1.01663 0.92976 1.44203 1.15463 1.00870 1.71609 1.19238 1.16207 0.89784 1.13621 0.93382 1.25304 1.02236 1.00660 0.95223 1.70188 1.50033 1.26247 1.09565 0.85620 0.77665 0.81325 0.78199 1.21547 1.21451 1.20467 1.20362 0.96153 0.86727 0.93861 1.23094 0.96028 0.99973 0.98580 1.22442 0.98671 0.99884 0.94071 1.22495 0.94790 0.97916 1.01309 1.22354 0.97476 0.99267 0.96336 1.22308 0.89755 1.03868 0.99030 0.87521 0.93563 0.94556 0.93460 0.95585 0.89231 0.87610 0.75030 0.88500 0.90018 0.95039 0.91221 0.91101 0.95494 0.93870 0.96282 0.93239 0.90321 0.96004 0.88832 0.92913 0.90017 0.94164 0.91106 0.89140 0.91751 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.01 113.37 1.25 1.69 16 2 O -0.40 -8.77 10.70 -148.98 -1.59 -10.37 16 3 C 0.06 1.29 5.43 71.98 0.39 1.68 16 4 C -0.09 -1.50 4.29 30.60 0.13 -1.36 16 5 C -0.07 -1.36 0.54 -52.21 -0.03 -1.39 16 6 C 0.52 14.86 4.93 87.66 0.43 15.30 16 7 O -0.59 -23.59 15.08 -3.04 -0.05 -23.63 16 8 N -0.71 -18.28 4.56 -443.96 -2.03 -20.31 16 9 C 0.17 5.66 2.20 44.69 0.10 5.76 16 10 H 0.04 1.94 6.31 -2.39 -0.02 1.93 16 11 C -0.11 -3.06 5.34 29.51 0.16 -2.90 16 12 C -0.12 -4.59 5.20 28.36 0.15 -4.45 16 13 C 0.15 6.75 5.45 83.58 0.46 7.21 16 14 N -0.60 -30.36 2.59 -707.88 -1.84 -32.20 16 15 C -0.26 -14.94 9.55 84.03 0.80 -14.14 16 16 H 0.05 2.89 7.96 -2.91 -0.02 2.86 16 17 C -0.04 -2.18 4.81 84.86 0.41 -1.77 16 18 N -0.91 -54.05 11.26 21.65 0.24 -53.81 16 19 Si 0.94 47.04 29.63 68.60 2.03 49.07 16 20 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 22 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 23 C 0.16 6.71 5.18 87.58 0.45 7.16 16 24 C -0.13 -4.98 5.98 31.86 0.19 -4.79 16 25 C -0.11 -2.33 4.78 31.67 0.15 -2.18 16 26 C -0.13 -2.38 6.91 31.88 0.22 -2.16 16 27 C -0.12 -1.55 6.83 31.66 0.22 -1.34 16 28 C -0.11 -1.56 5.87 31.32 0.18 -1.37 16 29 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 1.08 7.31 -2.39 -0.02 1.07 16 33 H 0.03 0.71 7.32 -2.38 -0.02 0.69 16 34 H 0.09 1.22 8.04 -2.39 -0.02 1.20 16 35 H 0.11 1.32 8.05 -2.39 -0.02 1.30 16 36 H 0.41 7.30 8.24 -92.71 -0.76 6.53 16 37 H 0.10 2.09 7.86 -2.39 -0.02 2.07 16 38 H 0.08 2.26 6.28 -2.39 -0.01 2.25 16 39 H 0.03 1.34 6.93 -2.39 -0.02 1.32 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 41 H 0.07 3.81 5.39 -2.39 -0.01 3.80 16 42 H 0.03 1.20 8.12 -2.39 -0.02 1.18 16 43 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.02 0.86 8.00 -2.38 -0.02 0.84 16 45 H 0.05 1.88 6.88 -2.39 -0.02 1.87 16 46 H 0.08 2.42 8.12 -2.39 -0.02 2.40 16 47 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.09 1.49 7.79 -2.39 -0.02 1.47 16 49 H 0.05 1.47 6.76 -2.39 -0.02 1.45 16 50 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 51 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 52 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 54 H 0.06 1.02 7.43 -2.39 -0.02 1.01 16 55 H 0.11 0.87 7.67 -2.39 -0.02 0.85 16 Total: -1.00 -73.49 411.49 2.53 -70.96 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.09 Total: 19.33 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.66 Total: 0.95 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -3.62 Total: -106.31 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.64 Total: -34.00 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -73.49 2.53 -70.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280775780.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.942 kcal (2) G-P(sol) polarization free energy of solvation -73.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds