Wall clock time and date at job start Tue Mar 31 2020 22:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99805 * 2 1 4 4 C 1.53002 * 109.46856 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47053 * 185.34349 * 4 3 2 6 6 C 1.50703 * 110.43697 * 294.15126 * 5 4 3 7 7 O 1.21276 * 119.99998 * 112.52866 * 6 5 4 8 8 N 1.34775 * 119.99621 * 292.52280 * 6 5 4 9 9 C 1.46503 * 120.00028 * 185.50139 * 8 6 5 10 10 H 1.09007 * 108.31751 * 327.38966 * 9 8 6 11 11 C 1.52559 * 108.51837 * 209.76890 * 9 8 6 12 12 C 1.50877 * 109.36115 * 153.73493 * 11 9 8 13 13 C 1.54295 * 110.23753 * 91.80146 * 12 11 9 14 14 N 1.47605 * 111.94012 * 319.70134 * 13 12 11 15 15 C 1.36938 * 118.64289 * 137.77611 * 14 13 12 16 16 H 1.07993 * 120.00106 * 215.13320 * 15 14 13 17 17 C 1.38812 * 119.99764 * 35.13631 * 15 14 13 18 18 N 1.31620 * 120.00340 * 3.80539 * 17 15 14 19 19 Si 1.86798 * 119.99716 * 183.53307 * 17 15 14 20 20 H 1.48499 * 109.47429 * 90.00141 * 19 17 15 21 21 H 1.48509 * 109.47082 * 209.99923 * 19 17 15 22 22 H 1.48496 * 109.47261 * 329.99744 * 19 17 15 23 23 C 1.44581 * 122.71305 * 317.49951 * 14 13 12 24 24 C 1.47098 * 108.51174 * 85.00190 * 9 8 6 25 25 C 1.54890 * 110.59988 * 56.76780 * 5 4 3 26 26 C 1.54889 * 102.75146 * 156.67685 * 25 5 4 27 27 C 1.54259 * 104.19515 * 322.05620 * 26 25 5 28 28 C 1.53879 * 106.59790 * 23.61274 * 27 26 25 29 29 H 1.09001 * 109.46918 * 300.00230 * 1 2 3 30 30 H 1.08995 * 109.46879 * 60.00322 * 1 2 3 31 31 H 1.09007 * 109.46829 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47548 * 59.99874 * 3 2 1 33 33 H 1.09002 * 109.46850 * 299.99228 * 3 2 1 34 34 H 1.09006 * 109.46957 * 65.34697 * 4 3 2 35 35 H 1.08992 * 109.47303 * 305.34405 * 4 3 2 36 36 H 0.96997 * 120.00739 * 5.50751 * 8 6 5 37 37 H 1.08997 * 109.49087 * 273.70520 * 11 9 8 38 38 H 1.08999 * 109.48737 * 33.76812 * 11 9 8 39 39 H 1.09011 * 109.36563 * 212.08115 * 12 11 9 40 40 H 1.09000 * 109.36721 * 331.82092 * 12 11 9 41 41 H 1.08993 * 109.14173 * 199.01437 * 13 12 11 42 42 H 1.09000 * 108.95840 * 80.26196 * 13 12 11 43 43 H 0.96995 * 120.00107 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.44996 * 211.02760 * 23 14 13 45 45 H 1.08999 * 109.44441 * 330.94414 * 23 14 13 46 46 H 1.08997 * 109.32552 * 63.79221 * 24 9 8 47 47 H 1.09005 * 109.18744 * 304.23274 * 24 9 8 48 48 H 1.09004 * 110.75531 * 274.99077 * 25 5 4 49 49 H 1.09000 * 110.75464 * 38.35954 * 25 5 4 50 50 H 1.09003 * 110.48506 * 203.38015 * 26 25 5 51 51 H 1.08996 * 110.60039 * 80.79463 * 26 25 5 52 52 H 1.08996 * 110.03862 * 264.32576 * 27 26 25 53 53 H 1.08997 * 110.07375 * 142.91841 * 27 26 25 54 54 H 1.09002 * 110.03122 * 240.71402 * 28 27 26 55 55 H 1.09003 * 110.07551 * 119.30675 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1572 2.5761 0.1350 6 6 3.8531 3.4082 -1.0841 7 8 3.1237 4.3728 -0.9934 8 7 4.3920 3.0805 -2.2752 9 6 4.1953 3.9553 -3.4338 10 1 3.2156 4.4252 -3.3459 11 6 4.2101 3.0985 -4.6959 12 6 3.4069 3.7827 -5.7744 13 6 4.3229 4.6765 -6.6362 14 7 5.3195 5.3955 -5.8186 15 6 6.6066 5.4818 -6.2783 16 1 7.4316 5.4557 -5.5819 17 6 6.8507 5.6028 -7.6394 18 7 5.8449 5.7100 -8.4815 19 14 8.6071 5.6211 -8.2752 20 1 9.0401 4.2323 -8.5734 21 1 8.6768 6.4380 -9.5134 22 1 9.5006 6.2076 -7.2443 23 6 4.9917 6.0174 -4.5552 24 6 5.2224 5.0079 -3.4039 25 6 3.6432 3.2814 1.4146 26 6 4.7596 4.3144 1.7075 27 6 6.0642 3.5734 1.3485 28 6 5.6811 2.4683 0.3486 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8642 0.7284 -0.9332 35 1 3.8504 0.5635 0.8391 36 1 4.9099 2.2654 -2.3655 37 1 5.2378 2.9683 -5.0351 38 1 3.7723 2.1241 -4.4792 39 1 2.9368 3.0300 -6.4075 40 1 2.6358 4.4003 -5.3140 41 1 3.7121 5.4042 -7.1705 42 1 4.8443 4.0532 -7.3626 43 1 6.0155 5.7950 -9.4326 44 1 5.6265 6.8907 -4.4050 45 1 3.9464 6.3262 -4.5632 46 1 6.2073 4.5541 -3.5139 47 1 5.1711 5.5315 -2.4492 48 1 2.6938 3.7821 1.2249 49 1 3.5492 2.5710 2.2359 50 1 4.7560 4.5914 2.7617 51 1 4.6382 5.1982 1.0813 52 1 6.5013 3.1317 2.2439 53 1 6.7721 4.2634 0.8893 54 1 5.9323 1.4901 0.7589 55 1 6.2024 2.6215 -0.5963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280775784.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:52 Heat of formation + Delta-G solvation = -101.204865 kcal Electronic energy + Delta-G solvation = -31813.804364 eV Core-core repulsion = 27849.598106 eV Total energy + Delta-G solvation = -3964.206258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.82313 -39.81022 -38.76746 -37.95799 -36.34278 -34.23221 -33.51264 -33.26824 -31.67449 -29.64560 -28.84915 -27.84492 -26.75014 -25.77139 -25.15803 -23.72142 -23.20352 -21.60854 -21.22277 -21.11960 -20.00109 -18.57352 -17.83985 -17.56707 -17.27875 -17.02609 -16.91257 -16.33901 -15.93638 -15.82630 -15.68518 -15.34526 -15.27200 -15.24427 -14.83873 -14.28357 -14.24367 -14.15823 -13.83262 -13.58198 -13.22087 -13.16489 -13.02255 -12.75163 -12.64583 -12.47658 -12.41802 -12.23413 -12.14101 -12.12221 -12.05106 -11.91621 -11.76966 -11.75621 -11.58725 -11.50546 -11.46363 -11.36686 -11.30748 -10.67148 -10.56051 -10.46942 -10.01887 -8.52221 -7.84099 -5.41983 1.46789 1.47999 1.56778 1.68792 2.22547 2.51103 2.71608 3.31375 3.44923 3.60304 3.66574 3.72696 3.80156 4.04495 4.08105 4.12039 4.19607 4.31472 4.34117 4.43959 4.44760 4.45758 4.48361 4.50978 4.54973 4.56692 4.67369 4.68785 4.77480 4.80676 4.83208 4.93611 4.95630 4.98956 5.03768 5.06618 5.07861 5.11349 5.13270 5.16397 5.24321 5.26800 5.33458 5.36306 5.48298 5.50118 5.57722 5.61376 5.70281 5.82430 6.15721 6.46765 6.63862 7.22396 7.32286 7.93880 8.37821 9.19969 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.002997 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.613937 B = 9340.001960 C =10403.011502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.060 3.940 4 C -0.095 4.095 5 C -0.074 4.074 6 C 0.524 3.476 7 O -0.580 6.580 8 N -0.718 5.718 9 C 0.169 3.831 10 H 0.057 0.943 11 C -0.099 4.099 12 C -0.131 4.131 13 C 0.191 3.809 14 N -0.601 5.601 15 C -0.266 4.266 16 H 0.061 0.939 17 C -0.041 4.041 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.282 1.282 21 H -0.296 1.296 22 H -0.271 1.271 23 C 0.161 3.839 24 C -0.131 4.131 25 C -0.102 4.102 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.111 4.111 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.027 0.973 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.408 0.592 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.050 0.950 41 H -0.008 1.008 42 H 0.042 0.958 43 H 0.249 0.751 44 H 0.037 0.963 45 H 0.032 0.968 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.059 0.941 49 H 0.099 0.901 50 H 0.081 0.919 51 H 0.039 0.961 52 H 0.088 0.912 53 H 0.053 0.947 54 H 0.104 0.896 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 -12.830 21.594 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.017 4.017 4 C -0.133 4.133 5 C -0.078 4.078 6 C 0.311 3.689 7 O -0.459 6.459 8 N -0.369 5.369 9 C 0.065 3.935 10 H 0.075 0.925 11 C -0.137 4.137 12 C -0.170 4.170 13 C 0.066 3.934 14 N -0.324 5.324 15 C -0.397 4.397 16 H 0.079 0.921 17 C -0.237 4.237 18 N -0.579 5.579 19 Si 0.793 3.207 20 H -0.208 1.208 21 H -0.223 1.223 22 H -0.195 1.195 23 C 0.033 3.967 24 C -0.172 4.172 25 C -0.140 4.140 26 C -0.164 4.164 27 C -0.161 4.161 28 C -0.149 4.149 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.245 0.755 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.010 0.990 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.117 0.883 50 H 0.100 0.900 51 H 0.058 0.942 52 H 0.106 0.894 53 H 0.072 0.928 54 H 0.122 0.878 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.531 -12.266 21.471 25.339 hybrid contribution 0.672 0.615 -1.198 1.505 sum -4.859 -11.651 20.273 23.882 Atomic orbital electron populations 1.22917 0.79812 1.03925 1.00473 1.87799 1.21163 1.28187 1.95532 1.22587 0.94713 0.84332 1.00046 1.21505 0.92395 0.94240 1.05132 1.21606 0.98565 0.94716 0.92864 1.20905 0.78387 0.84635 0.84938 1.90654 1.38458 1.30879 1.85934 1.46281 1.54801 1.26619 1.09198 1.19678 0.98543 0.90559 0.84746 0.92517 1.21095 1.01369 0.97948 0.93329 1.21906 0.98022 0.99032 0.98024 1.20837 0.89251 0.92144 0.91141 1.43763 1.07148 1.60927 1.20517 1.19397 0.84895 1.44455 0.90958 0.92141 1.26019 1.00584 0.99631 0.97476 1.70167 1.31005 1.54808 1.01967 0.85311 0.80490 0.77485 0.77369 1.20849 1.22260 1.19542 1.20645 0.97247 0.93280 0.85511 1.21571 0.99136 0.97944 0.98551 1.22487 0.98481 0.97841 0.95153 1.22337 0.94828 0.97688 1.01550 1.22146 0.97137 0.97147 0.99670 1.22313 0.90889 1.01342 1.00360 0.93109 0.94346 0.87927 0.92259 0.95466 0.90297 0.87610 0.75550 0.91977 0.90210 0.90623 0.93173 0.98984 0.93989 0.94153 0.94496 0.95009 0.92598 0.93172 0.92186 0.88265 0.90029 0.94239 0.89363 0.92775 0.87775 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.22 10.70 -148.98 -1.59 -9.82 16 3 C 0.06 1.17 5.52 71.98 0.40 1.57 16 4 C -0.10 -1.51 4.59 30.59 0.14 -1.37 16 5 C -0.07 -1.37 0.48 -51.85 -0.02 -1.40 16 6 C 0.52 14.06 5.31 87.66 0.47 14.52 16 7 O -0.58 -20.40 15.09 -3.02 -0.05 -20.45 16 8 N -0.72 -18.65 4.43 -452.05 -2.00 -20.66 16 9 C 0.17 5.51 2.00 43.01 0.09 5.60 16 10 H 0.06 2.10 6.58 -2.38 -0.02 2.09 16 11 C -0.10 -3.22 5.00 29.76 0.15 -3.08 16 12 C -0.13 -4.80 5.71 30.34 0.17 -4.63 16 13 C 0.19 9.21 4.66 86.61 0.40 9.62 16 14 N -0.60 -29.92 2.24 -697.70 -1.56 -31.48 16 15 C -0.27 -14.44 9.36 84.03 0.79 -13.66 16 16 H 0.06 3.23 7.83 -2.91 -0.02 3.20 16 17 C -0.04 -2.28 5.11 84.86 0.43 -1.85 16 18 N -0.93 -54.89 10.95 21.65 0.24 -54.66 16 19 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C 0.16 7.02 5.65 87.37 0.49 7.52 16 24 C -0.13 -4.80 5.20 29.39 0.15 -4.64 16 25 C -0.10 -1.85 4.27 31.89 0.14 -1.72 16 26 C -0.13 -2.38 6.57 31.67 0.21 -2.17 16 27 C -0.12 -1.95 6.80 31.32 0.21 -1.74 16 28 C -0.11 -1.68 5.85 31.32 0.18 -1.50 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.06 1.09 6.80 -2.39 -0.02 1.07 16 33 H 0.03 0.65 7.63 -2.39 -0.02 0.63 16 34 H 0.08 1.22 7.94 -2.38 -0.02 1.20 16 35 H 0.11 1.28 8.00 -2.39 -0.02 1.26 16 36 H 0.41 8.46 7.93 -92.71 -0.74 7.72 16 37 H 0.06 2.29 7.49 -2.39 -0.02 2.27 16 38 H 0.08 2.13 8.05 -2.39 -0.02 2.11 16 39 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 40 H 0.05 1.82 7.32 -2.39 -0.02 1.80 16 41 H -0.01 -0.43 7.95 -2.39 -0.02 -0.45 16 42 H 0.04 2.24 6.64 -2.39 -0.02 2.23 16 43 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 44 H 0.04 1.66 7.99 -2.38 -0.02 1.64 16 45 H 0.03 1.37 8.06 -2.39 -0.02 1.35 16 46 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.05 1.83 8.04 -2.38 -0.02 1.81 16 48 H 0.06 1.36 7.02 -2.38 -0.02 1.35 16 49 H 0.10 1.30 8.06 -2.39 -0.02 1.28 16 50 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 51 H 0.04 0.99 8.05 -2.39 -0.02 0.97 16 52 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 54 H 0.10 1.04 7.74 -2.39 -0.02 1.02 16 55 H 0.06 1.10 7.09 -2.39 -0.02 1.08 16 Total: -1.00 -67.83 413.04 2.81 -65.02 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.11 Total: 22.81 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 5.65 Total: 2.70 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -3.33 Total: -106.80 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.64 Total: -30.27 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.83 2.81 -65.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280775784.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.185 kcal (2) G-P(sol) polarization free energy of solvation -67.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds