Wall clock time and date at job start Tue Mar 31 2020 22:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99881 * 2 1 4 4 C 1.52998 * 109.46959 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47337 * 276.08020 * 4 3 2 6 6 O 1.21281 * 119.99851 * 241.93875 * 5 4 3 7 7 N 1.34775 * 119.99985 * 61.94223 * 5 4 3 8 8 C 1.47419 * 125.64831 * 351.64526 * 7 5 4 9 9 C 1.54910 * 104.83276 * 155.84115 * 8 7 5 10 10 C 1.55151 * 101.61793 * 36.98831 * 9 8 7 11 11 C 1.47023 * 125.64832 * 171.60684 * 7 5 4 12 12 H 1.08997 * 109.88418 * 300.50597 * 11 7 5 13 13 C 1.53001 * 109.88148 * 61.52315 * 11 7 5 14 14 N 1.46500 * 109.47058 * 183.19758 * 13 11 7 15 15 C 1.46498 * 120.00049 * 92.69618 * 14 13 11 16 16 C 1.36933 * 120.00104 * 272.69524 * 14 13 11 17 17 H 1.08008 * 119.99570 * 6.81636 * 16 14 13 18 18 C 1.38809 * 120.00344 * 186.82570 * 16 14 13 19 19 N 1.31620 * 119.99931 * 7.42163 * 18 16 14 20 20 Si 1.86799 * 120.00022 * 187.42828 * 18 16 14 21 21 H 1.48498 * 109.47336 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47263 * 119.99557 * 20 18 16 23 23 H 1.48502 * 109.47037 * 239.99408 * 20 18 16 24 24 C 1.53002 * 109.47102 * 36.08357 * 4 3 2 25 25 C 1.53003 * 109.47400 * 179.97438 * 24 4 3 26 26 C 1.53004 * 109.46998 * 299.99997 * 25 24 4 27 27 C 1.53002 * 109.47043 * 59.99784 * 26 25 24 28 28 C 1.52998 * 109.47102 * 299.99864 * 27 26 25 29 29 H 1.09002 * 109.47207 * 299.99939 * 1 2 3 30 30 H 1.08997 * 109.47215 * 60.00382 * 1 2 3 31 31 H 1.09005 * 109.47296 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47126 * 59.99795 * 3 2 1 33 33 H 1.08998 * 109.47333 * 299.99759 * 3 2 1 34 34 H 1.08998 * 110.36944 * 36.99975 * 8 7 5 35 35 H 1.09003 * 110.36672 * 274.68168 * 8 7 5 36 36 H 1.09000 * 111.00291 * 155.08735 * 9 8 7 37 37 H 1.09004 * 111.00384 * 278.89244 * 9 8 7 38 38 H 1.09005 * 110.71932 * 82.88102 * 10 9 8 39 39 H 1.09002 * 110.72252 * 206.15373 * 10 9 8 40 40 H 1.09001 * 109.46983 * 303.19517 * 13 11 7 41 41 H 1.08999 * 109.47313 * 63.19162 * 13 11 7 42 42 H 1.09001 * 109.47462 * 356.31699 * 15 14 13 43 43 H 1.08997 * 109.47457 * 116.31995 * 15 14 13 44 44 H 1.09001 * 109.46851 * 236.32044 * 15 14 13 45 45 H 0.96999 * 119.99732 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.47046 * 299.99629 * 24 4 3 47 47 H 1.09000 * 109.47317 * 59.99476 * 24 4 3 48 48 H 1.08994 * 109.47500 * 179.97438 * 25 24 4 49 49 H 1.09004 * 109.46848 * 59.99216 * 25 24 4 50 50 H 1.09000 * 109.46747 * 299.99823 * 26 25 24 51 51 H 1.08999 * 109.47026 * 180.02562 * 26 25 24 52 52 H 1.09001 * 109.46523 * 180.02562 * 27 26 25 53 53 H 1.09000 * 109.47317 * 60.00388 * 27 26 25 54 54 H 1.09000 * 109.47463 * 300.00435 * 28 27 26 55 55 H 1.09004 * 109.47332 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0237 0.9952 1.4137 6 8 4.7588 1.8183 1.9167 7 7 3.6437 -0.0890 2.1184 8 6 2.6265 -1.0713 1.7016 9 6 2.9892 -2.3674 2.4688 10 6 3.4682 -1.8003 3.8312 11 6 4.1754 -0.4882 3.4296 12 1 5.2503 -0.6540 3.3589 13 6 3.8839 0.6017 4.4631 14 7 4.4833 0.2300 5.7471 15 6 5.8320 0.6905 6.0866 16 6 3.7830 -0.5479 6.6300 17 1 2.8366 -0.9784 6.3375 18 6 4.2892 -0.7830 7.9010 19 7 5.3649 -0.1439 8.3095 20 14 3.4439 -2.0064 9.0315 21 1 2.2642 -2.5859 8.3403 22 1 4.3937 -3.0920 9.3848 23 1 3.0016 -1.3137 10.2683 24 6 3.9521 -0.0179 -0.8486 25 6 5.4773 -0.1384 -0.8485 26 6 6.0896 1.1358 -1.4337 27 6 5.6729 2.3384 -0.5845 28 6 4.1477 2.4588 -0.5846 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 2.6799 -1.2396 0.6261 35 1 1.6308 -0.7294 1.9839 36 1 2.1135 -3.0038 2.5965 37 1 3.7919 -2.9072 1.9663 38 1 2.6193 -1.5964 4.4840 39 1 4.1679 -2.4856 4.3097 40 1 4.3083 1.5467 4.1240 41 1 2.8060 0.7098 4.5830 42 1 6.2526 1.2370 5.2425 43 1 5.7841 1.3458 6.9562 44 1 6.4629 -0.1689 6.3136 45 1 5.7188 -0.3085 9.1975 46 1 3.5155 -0.9257 -0.4319 47 1 3.5988 0.1191 -1.8706 48 1 5.7742 -0.9954 -1.4531 49 1 5.8309 -0.2752 0.1735 50 1 5.7360 1.2726 -2.4556 51 1 7.1762 1.0498 -1.4340 52 1 6.1088 3.2462 -1.0017 53 1 6.0265 2.2016 0.4375 54 1 3.7941 2.5956 -1.6065 55 1 3.8508 3.3158 0.0200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281939918.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:48 Heat of formation + Delta-G solvation = -60.297925 kcal Electronic energy + Delta-G solvation = -33248.393478 eV Core-core repulsion = 29285.961078 eV Total energy + Delta-G solvation = -3962.432400 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.14357 -39.56600 -38.68082 -37.56687 -37.09327 -33.72568 -33.20202 -32.28923 -31.44988 -30.42501 -28.03109 -27.88379 -26.87655 -26.12026 -24.98418 -23.56481 -23.03898 -22.63781 -21.73682 -21.08060 -19.34672 -18.87692 -17.82737 -17.33510 -17.07798 -16.94817 -16.71109 -16.57327 -15.89705 -15.58040 -15.41023 -15.07785 -15.04996 -14.79570 -14.68995 -14.35733 -14.11205 -13.86248 -13.70060 -13.45370 -13.22425 -13.11003 -13.06133 -12.95860 -12.79375 -12.69466 -12.66763 -12.62454 -12.28762 -12.26472 -12.01580 -11.97459 -11.87458 -11.64398 -11.54919 -11.47590 -11.37371 -10.96840 -10.90454 -10.69664 -10.42097 -10.26067 -9.56357 -8.86208 -7.70687 -5.19623 1.46925 1.47801 1.58233 1.70643 2.10270 2.53637 2.83696 3.35337 3.41821 3.66018 3.70507 3.77900 3.83168 3.90703 4.05430 4.14424 4.22270 4.29331 4.36664 4.40694 4.50053 4.51194 4.54331 4.56439 4.62673 4.65836 4.68020 4.71814 4.74998 4.75636 4.90172 4.92744 4.94094 5.02403 5.04437 5.07351 5.11962 5.19478 5.22354 5.25648 5.27970 5.33082 5.38443 5.41451 5.43956 5.49907 5.60392 5.65593 5.70748 5.77533 6.21746 6.29638 6.77318 7.16177 7.32244 7.86867 8.30670 9.27455 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.003754 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.180351 B = 7457.856634 C = 8392.021725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.386 6.386 3 C 0.074 3.926 4 C -0.064 4.064 5 C 0.529 3.471 6 O -0.580 6.580 7 N -0.606 5.606 8 C 0.103 3.897 9 C -0.131 4.131 10 C -0.105 4.105 11 C 0.128 3.872 12 H 0.032 0.968 13 C 0.156 3.844 14 N -0.619 5.619 15 C 0.189 3.811 16 C -0.239 4.239 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.973 3.027 21 H -0.260 1.260 22 H -0.294 1.294 23 H -0.296 1.296 24 C -0.101 4.101 25 C -0.124 4.124 26 C -0.113 4.113 27 C -0.134 4.134 28 C -0.088 4.088 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.035 0.965 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.003 0.997 43 H 0.030 0.970 44 H 0.004 0.996 45 H 0.242 0.758 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.024 0.976 50 H 0.085 0.915 51 H 0.055 0.945 52 H 0.067 0.933 53 H 0.049 0.951 54 H 0.101 0.899 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.772 -1.959 -26.575 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.305 6.305 3 C -0.003 4.003 4 C -0.067 4.067 5 C 0.319 3.681 6 O -0.460 6.460 7 N -0.339 5.339 8 C -0.018 4.018 9 C -0.169 4.169 10 C -0.143 4.143 11 C 0.021 3.979 12 H 0.050 0.950 13 C 0.029 3.971 14 N -0.344 5.344 15 C 0.044 3.956 16 C -0.368 4.368 17 H 0.104 0.896 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.802 3.198 21 H -0.184 1.184 22 H -0.221 1.221 23 H -0.224 1.224 24 C -0.137 4.137 25 C -0.162 4.162 26 C -0.150 4.150 27 C -0.171 4.171 28 C -0.126 4.126 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.022 0.978 43 H 0.048 0.952 44 H 0.023 0.977 45 H 0.052 0.948 46 H 0.106 0.894 47 H 0.117 0.883 48 H 0.099 0.901 49 H 0.043 0.957 50 H 0.103 0.897 51 H 0.073 0.927 52 H 0.086 0.914 53 H 0.068 0.932 54 H 0.119 0.881 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.206 -1.637 -26.206 27.824 hybrid contribution 0.185 0.046 1.786 1.796 sum -9.020 -1.591 -24.420 26.081 Atomic orbital electron populations 1.22903 0.80128 1.04024 1.00452 1.88105 1.20801 1.26261 1.95352 1.22400 0.90417 0.85950 1.01501 1.20915 0.95292 0.99877 0.90600 1.20821 0.79785 0.79356 0.88164 1.90628 1.39514 1.43751 1.72097 1.48706 1.40610 1.25706 1.18890 1.23216 0.90385 0.86422 1.01746 1.22957 1.02456 0.97335 0.94172 1.22428 0.99868 0.94310 0.97728 1.22098 0.96257 0.96434 0.83062 0.94976 1.21016 0.95800 0.95368 0.84912 1.44181 1.14688 1.60082 1.15404 1.20658 0.84471 0.96066 0.94447 1.19718 1.02815 1.21496 0.92809 0.89576 1.25715 0.99109 1.02312 0.98916 1.70414 1.25957 1.45465 1.18395 0.85081 0.77930 0.78241 0.78552 1.18362 1.22112 1.22372 1.21720 0.95049 0.96442 1.00528 1.21589 0.96057 0.98818 0.99690 1.21518 0.99936 0.93828 0.99748 1.21708 0.95877 0.98786 1.00750 1.21350 0.95530 0.94304 1.01383 0.94672 0.92645 0.87969 0.94649 0.89339 0.85423 0.91086 0.87903 0.90607 0.91589 0.92156 0.94710 0.94547 0.97836 0.95160 0.97745 0.94767 0.89406 0.88267 0.90064 0.95727 0.89657 0.92656 0.91396 0.93209 0.88056 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.65 113.37 1.21 1.43 16 2 O -0.39 -5.84 4.70 -148.98 -0.70 -6.54 16 3 C 0.07 1.28 4.98 71.98 0.36 1.64 16 4 C -0.06 -1.38 0.50 -52.93 -0.03 -1.40 16 5 C 0.53 17.12 4.74 87.66 0.42 17.53 16 6 O -0.58 -24.09 12.44 -3.03 -0.04 -24.13 16 7 N -0.61 -19.34 3.03 -787.98 -2.39 -21.73 16 8 C 0.10 2.41 4.58 86.86 0.40 2.81 16 9 C -0.13 -3.12 7.08 31.98 0.23 -2.89 16 10 C -0.11 -3.64 5.46 31.80 0.17 -3.47 16 11 C 0.13 5.07 3.17 45.36 0.14 5.21 16 12 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 13 C 0.16 7.38 5.15 86.38 0.45 7.82 16 14 N -0.62 -33.92 2.89 -726.94 -2.10 -36.02 16 15 C 0.19 10.76 8.99 127.77 1.15 11.91 16 16 C -0.24 -13.37 8.77 84.03 0.74 -12.63 16 17 H 0.09 4.53 6.42 -2.91 -0.02 4.51 16 18 C -0.07 -3.94 5.40 84.86 0.46 -3.48 16 19 N -0.95 -58.91 9.62 21.65 0.21 -58.70 16 20 Si 0.97 46.05 29.56 68.60 2.03 48.08 16 21 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 24 C -0.10 -1.76 4.10 30.60 0.13 -1.63 16 25 C -0.12 -2.53 5.70 30.60 0.17 -2.36 16 26 C -0.11 -2.15 5.92 30.60 0.18 -1.97 16 27 C -0.13 -3.17 5.63 30.59 0.17 -3.00 16 28 C -0.09 -1.80 4.24 30.59 0.13 -1.68 16 29 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.04 0.75 7.92 -2.39 -0.02 0.73 16 33 H 0.09 1.05 7.91 -2.39 -0.02 1.03 16 34 H 0.13 2.46 2.92 -2.39 -0.01 2.45 16 35 H 0.07 1.63 6.88 -2.39 -0.02 1.61 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 2.44 6.28 -2.38 -0.01 2.43 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.03 1.77 6.25 -2.39 -0.01 1.76 16 41 H 0.04 1.70 7.99 -2.39 -0.02 1.68 16 42 H 0.00 0.17 7.79 -2.39 -0.02 0.15 16 43 H 0.03 1.87 6.64 -2.39 -0.02 1.85 16 44 H 0.00 0.24 7.49 -2.39 -0.02 0.23 16 45 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 46 H 0.09 1.56 4.41 -2.39 -0.01 1.54 16 47 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.02 0.68 7.22 -2.38 -0.02 0.67 16 50 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.05 1.64 5.59 -2.39 -0.01 1.63 16 54 H 0.10 1.37 8.12 -2.39 -0.02 1.35 16 55 H 0.05 1.26 8.08 -2.39 -0.02 1.24 16 Total: -1.00 -73.11 392.58 4.33 -68.78 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.86 Total: 16.43 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 6.47 Total: 13.84 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -4.28 Total: -116.45 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.74 Total: -30.67 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -73.11 4.33 -68.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281939918.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.482 kcal (2) G-P(sol) polarization free energy of solvation -73.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds