Wall clock time and date at job start Tue Mar 31 2020 22:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99863 * 2 1 4 4 C 1.53000 * 109.47281 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46898 * 64.99600 * 4 3 2 6 6 C 1.36939 * 120.00067 * 270.00096 * 5 4 3 7 7 H 1.08002 * 119.99801 * 145.88397 * 6 5 4 8 8 C 1.38808 * 119.99914 * 325.87476 * 6 5 4 9 9 N 1.31620 * 120.00252 * 336.95476 * 8 6 5 10 10 Si 1.86804 * 119.99587 * 156.95285 * 8 6 5 11 11 H 1.48495 * 109.47057 * 60.00315 * 10 8 6 12 12 H 1.48502 * 109.46749 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47205 * 300.00122 * 10 8 6 14 14 C 1.46504 * 120.00116 * 90.00360 * 5 4 3 15 15 C 1.53002 * 109.47210 * 89.40664 * 14 5 4 16 16 N 1.46497 * 109.46928 * 180.02562 * 15 14 5 17 17 C 1.34783 * 119.99923 * 179.97438 * 16 15 14 18 18 O 1.21284 * 119.99560 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99991 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.47623 * 300.00683 * 19 17 16 21 21 C 1.53002 * 109.47116 * 60.00434 * 19 17 16 22 22 C 1.52998 * 109.47383 * 179.97438 * 21 19 17 23 23 C 1.52989 * 109.47378 * 300.00095 * 22 21 19 24 24 C 1.53006 * 109.47242 * 59.99815 * 23 22 21 25 25 C 1.53002 * 109.47005 * 300.00018 * 24 23 22 26 26 H 1.09001 * 109.46996 * 299.99866 * 25 24 23 27 27 C 1.52993 * 109.47167 * 179.97438 * 25 24 23 28 28 C 1.53003 * 117.50061 * 128.62429 * 27 25 24 29 29 C 1.53003 * 117.49998 * 59.99701 * 27 25 24 30 30 H 1.09000 * 109.47108 * 60.00293 * 1 2 3 31 31 H 1.09007 * 109.47141 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47504 * 300.00289 * 1 2 3 33 33 H 1.09000 * 109.47391 * 59.99774 * 3 2 1 34 34 H 1.09003 * 109.46955 * 299.99747 * 3 2 1 35 35 H 1.08998 * 109.47024 * 304.99995 * 4 3 2 36 36 H 1.09005 * 109.47243 * 184.99613 * 4 3 2 37 37 H 0.96996 * 119.99794 * 179.97438 * 9 8 6 38 38 H 1.09003 * 109.46849 * 329.41054 * 14 5 4 39 39 H 1.08999 * 109.47436 * 209.41290 * 14 5 4 40 40 H 1.09001 * 109.47374 * 300.00093 * 15 14 5 41 41 H 1.09003 * 109.46896 * 60.00419 * 15 14 5 42 42 H 0.97001 * 120.00512 * 0.02562 * 16 15 14 43 43 H 1.08998 * 109.47115 * 300.00028 * 21 19 17 44 44 H 1.09002 * 109.47330 * 59.99367 * 21 19 17 45 45 H 1.09003 * 109.47398 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.46673 * 60.00096 * 22 21 19 47 47 H 1.08999 * 109.47277 * 300.00202 * 23 22 21 48 48 H 1.09000 * 109.47778 * 179.97438 * 23 22 21 49 49 H 1.09003 * 109.47298 * 180.02562 * 24 23 22 50 50 H 1.08999 * 109.46668 * 60.00014 * 24 23 22 51 51 H 1.09006 * 115.55129 * 274.33385 * 27 25 24 52 52 H 1.08998 * 117.49436 * 359.97438 * 28 27 25 53 53 H 1.09002 * 117.49823 * 145.02252 * 28 27 25 54 54 H 1.08992 * 117.50163 * 214.97729 * 29 27 25 55 55 H 1.08997 * 117.49615 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.0978 -0.7975 -1.3343 7 1 3.8764 -1.3034 -2.2625 8 6 4.5052 -1.5273 -0.2261 9 7 5.1945 -0.9419 0.7303 10 14 4.0752 -3.3402 -0.0921 11 1 4.6630 -4.0746 -1.2411 12 1 4.6214 -3.8859 1.1765 13 1 2.5990 -3.5011 -0.1047 14 6 4.2882 1.3997 -2.4130 15 6 5.7649 1.7982 -2.3735 16 7 6.0763 2.6344 -3.5353 17 6 7.3267 3.1064 -3.7102 18 8 8.1940 2.8383 -2.9059 19 6 7.6471 3.9661 -4.9057 20 1 7.4464 3.4071 -5.8196 21 6 6.7777 5.2248 -4.8765 22 6 7.1035 6.0980 -6.0898 23 6 8.5799 6.4969 -6.0494 24 6 9.4494 5.2383 -6.0786 25 6 9.1237 4.3651 -4.8652 26 1 9.3241 4.9240 -3.9511 27 6 9.9926 3.1063 -4.8947 28 6 10.7787 2.7605 -3.6284 29 6 11.5106 3.2947 -4.8614 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8463 -0.8900 35 1 3.8507 0.5686 0.8427 36 1 3.9784 2.1767 0.0901 37 1 5.4788 -1.4518 1.5048 38 1 3.6692 2.2967 -2.3919 39 1 4.0870 0.8409 -3.3269 40 1 5.9661 2.3571 -1.4596 41 1 6.3839 0.9012 -2.3945 42 1 5.3826 2.8491 -4.1784 43 1 5.7259 4.9405 -4.9049 44 1 6.9784 5.7838 -3.9625 45 1 6.4838 6.9944 -6.0693 46 1 6.9031 5.5390 -7.0039 47 1 8.7804 7.0558 -5.1353 48 1 8.8122 7.1187 -6.9140 49 1 10.5013 5.5225 -6.0493 50 1 9.2490 4.6795 -6.9927 51 1 9.6011 2.2785 -5.4862 52 1 10.6771 3.4302 -2.7745 53 1 10.9044 1.7052 -3.3865 54 1 12.1178 2.5907 -5.4305 55 1 11.8902 4.3155 -4.8189 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284658068.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:41 Heat of formation + Delta-G solvation = -75.096717 kcal Electronic energy + Delta-G solvation = -30739.455594 eV Core-core repulsion = 26776.381470 eV Total energy + Delta-G solvation = -3963.074124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.37749 -39.19125 -38.77097 -37.35575 -37.16984 -35.51997 -33.35671 -32.23386 -31.31329 -30.85999 -28.93060 -27.11609 -25.80774 -24.62165 -24.26429 -23.57406 -23.02098 -21.85070 -21.23381 -21.05311 -20.56940 -18.69967 -18.07510 -17.32364 -17.07132 -16.72408 -16.45260 -16.39714 -16.18327 -15.74414 -15.56291 -15.32057 -15.14934 -14.91102 -14.86788 -14.66448 -14.17409 -14.14286 -13.62726 -13.42261 -13.36582 -13.25459 -12.90840 -12.69420 -12.63254 -12.44932 -12.38290 -12.36373 -12.25275 -12.15923 -11.95251 -11.93506 -11.75109 -11.56959 -11.52347 -11.29926 -11.28063 -10.96380 -10.76066 -10.46350 -10.32051 -10.22860 -9.90830 -8.58798 -7.76912 -5.32838 1.46233 1.51009 1.57116 1.83255 2.31998 2.59949 3.01014 3.22580 3.36836 3.59363 3.67287 3.75690 3.86125 4.08740 4.15291 4.20463 4.28926 4.31893 4.37241 4.41713 4.47135 4.48869 4.54138 4.55468 4.57848 4.63468 4.65209 4.69967 4.76659 4.77133 4.82080 4.84081 4.92588 4.93311 4.94927 5.05026 5.14313 5.14683 5.20986 5.25929 5.28670 5.30455 5.32383 5.38818 5.44351 5.48410 5.60614 5.65637 5.71721 5.84653 6.45744 6.68398 6.76030 7.21832 7.48201 7.91671 8.38524 9.20734 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.002674 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.405115 B =10467.958952 C =11900.322567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.058 3.942 4 C 0.135 3.865 5 N -0.585 5.585 6 C -0.244 4.244 7 H 0.054 0.946 8 C -0.028 4.028 9 N -0.919 5.919 10 Si 0.948 3.052 11 H -0.279 1.279 12 H -0.298 1.298 13 H -0.280 1.280 14 C 0.144 3.856 15 C 0.125 3.875 16 N -0.716 5.716 17 C 0.500 3.500 18 O -0.572 6.572 19 C -0.089 4.089 20 H 0.113 0.887 21 C -0.108 4.108 22 C -0.112 4.112 23 C -0.121 4.121 24 C -0.105 4.105 25 C -0.031 4.031 26 H 0.052 0.948 27 C -0.139 4.139 28 C -0.169 4.169 29 C -0.167 4.167 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.247 0.753 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.028 0.972 41 H 0.021 0.979 42 H 0.411 0.589 43 H 0.081 0.919 44 H 0.052 0.948 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.054 0.946 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.089 0.911 52 H 0.073 0.927 53 H 0.066 0.934 54 H 0.100 0.900 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 16.581 -15.881 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.021 4.021 4 C 0.009 3.991 5 N -0.306 5.306 6 C -0.374 4.374 7 H 0.071 0.929 8 C -0.225 4.225 9 N -0.564 5.564 10 Si 0.778 3.222 11 H -0.205 1.205 12 H -0.225 1.225 13 H -0.207 1.207 14 C 0.018 3.982 15 C -0.002 4.002 16 N -0.369 5.369 17 C 0.287 3.713 18 O -0.451 6.451 19 C -0.110 4.110 20 H 0.131 0.869 21 C -0.146 4.146 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.142 4.142 25 C -0.050 4.050 26 H 0.071 0.929 27 C -0.157 4.157 28 C -0.207 4.207 29 C -0.203 4.203 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.248 0.752 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.107 0.893 52 H 0.092 0.908 53 H 0.085 0.915 54 H 0.118 0.882 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.773 16.140 -15.154 22.210 hybrid contribution -0.452 -1.228 0.803 1.535 sum 1.322 14.913 -14.351 20.738 Atomic orbital electron populations 1.22816 0.81620 1.02503 1.00136 1.88155 1.19567 1.28732 1.95190 1.23173 0.96271 0.84019 0.98605 1.21029 0.90110 0.96210 0.91749 1.43858 1.74920 1.02304 1.09480 1.19011 1.37624 0.83001 0.97809 0.92873 1.25528 0.97348 1.00740 0.98876 1.70086 1.37759 1.37105 1.11455 0.85646 0.78164 0.82032 0.76382 1.20522 1.22471 1.20672 1.21155 0.90928 0.94780 0.91374 1.21747 0.99398 0.92035 0.86998 1.46001 1.11645 1.52076 1.27204 1.21455 0.81778 0.80142 0.87925 1.90721 1.47421 1.59832 1.47092 1.21402 0.97192 0.96610 0.95791 0.86942 1.21548 0.99168 0.94148 0.99713 1.21521 0.96385 0.99667 0.97414 1.21583 0.94968 0.97071 1.02247 1.21541 1.00135 0.95712 0.96812 1.20492 0.91427 0.93997 0.99095 0.92902 1.22157 0.93164 0.99365 1.00988 1.22586 1.05529 1.00109 0.92450 1.23075 0.93875 1.02644 1.00750 0.93578 0.90234 0.93579 0.93510 0.93749 0.91186 0.93284 0.94414 0.91276 0.92540 0.95322 0.96021 0.75224 0.90020 0.92882 0.90511 0.90458 0.92754 0.90290 0.91254 0.90788 0.89297 0.90829 0.91507 0.88197 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -17.13 10.18 -148.98 -1.52 -18.64 16 3 C 0.06 2.24 6.28 71.98 0.45 2.69 16 4 C 0.14 6.28 5.73 86.38 0.49 6.77 16 5 N -0.59 -28.33 2.43 -701.99 -1.71 -30.04 16 6 C -0.24 -13.44 8.98 84.03 0.75 -12.68 16 7 H 0.05 2.93 7.93 -2.91 -0.02 2.91 16 8 C -0.03 -1.61 4.95 84.86 0.42 -1.19 16 9 N -0.92 -55.51 11.33 21.65 0.25 -55.26 16 10 Si 0.95 47.02 29.61 68.60 2.03 49.05 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 13 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 14 C 0.14 5.54 5.78 86.38 0.50 6.04 16 15 C 0.13 5.05 6.00 86.38 0.52 5.57 16 16 N -0.72 -21.29 5.45 -463.05 -2.52 -23.81 16 17 C 0.50 15.53 6.87 87.66 0.60 16.13 16 18 O -0.57 -23.39 13.17 -3.04 -0.04 -23.43 16 19 C -0.09 -1.84 2.04 -11.54 -0.02 -1.86 16 20 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 21 C -0.11 -1.71 5.10 30.59 0.16 -1.55 16 22 C -0.11 -1.26 5.92 30.59 0.18 -1.07 16 23 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 24 C -0.10 -1.52 5.04 30.60 0.15 -1.37 16 25 C -0.03 -0.67 1.52 -10.79 -0.02 -0.68 16 26 H 0.05 1.38 7.86 -2.39 -0.02 1.36 16 27 C -0.14 -3.44 4.07 -10.79 -0.04 -3.48 16 28 C -0.17 -5.04 8.32 30.60 0.25 -4.79 16 29 C -0.17 -3.57 9.74 30.60 0.30 -3.27 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 3.89 5.33 -2.39 -0.01 3.87 16 36 H 0.05 2.11 8.07 -2.38 -0.02 2.09 16 37 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.07 2.21 8.08 -2.39 -0.02 2.19 16 39 H 0.06 2.08 8.03 -2.39 -0.02 2.06 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.41 8.86 7.89 -92.71 -0.73 8.13 16 43 H 0.08 1.08 7.56 -2.39 -0.02 1.06 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 0.96 7.29 -2.39 -0.02 0.95 16 50 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.09 2.28 8.11 -2.38 -0.02 2.26 16 52 H 0.07 2.44 7.91 -2.39 -0.02 2.42 16 53 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 54 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 55 H 0.10 1.90 7.60 -2.39 -0.02 1.88 16 Total: -1.00 -72.84 427.01 2.73 -70.12 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.10 Total: 25.99 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 6.13 Total: 6.03 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -3.98 Total: -109.11 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -1.56 Total: -42.08 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -72.84 2.73 -70.12 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284658068.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.978 kcal (2) G-P(sol) polarization free energy of solvation -72.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds