Wall clock time and date at job start Tue Mar 31 2020 22:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99787 * 2 1 4 4 C 1.52992 * 109.47008 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47151 * 65.00135 * 4 3 2 6 6 C 1.36941 * 119.99691 * 269.99472 * 5 4 3 7 7 H 1.07997 * 119.99780 * 145.87487 * 6 5 4 8 8 C 1.38816 * 120.00064 * 325.88104 * 6 5 4 9 9 N 1.31616 * 119.99760 * 336.94619 * 8 6 5 10 10 Si 1.86801 * 119.99626 * 156.94807 * 8 6 5 11 11 H 1.48495 * 109.47417 * 59.99967 * 10 8 6 12 12 H 1.48503 * 109.46835 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47084 * 299.99692 * 10 8 6 14 14 C 1.46493 * 120.00219 * 89.99846 * 5 4 3 15 15 C 1.53004 * 109.47035 * 89.40136 * 14 5 4 16 16 N 1.46502 * 109.47026 * 180.02562 * 15 14 5 17 17 C 1.34783 * 120.00168 * 180.02562 * 16 15 14 18 18 O 1.21277 * 119.99372 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00037 * 179.97438 * 17 16 15 20 20 H 1.09004 * 109.46874 * 299.99444 * 19 17 16 21 21 C 1.52998 * 109.47327 * 59.99881 * 19 17 16 22 22 C 1.53000 * 109.47286 * 59.99685 * 21 19 17 23 23 C 1.53004 * 109.47061 * 60.00125 * 22 21 19 24 24 C 1.52998 * 109.46969 * 300.00069 * 23 22 21 25 25 C 1.53000 * 109.47286 * 60.00068 * 24 23 22 26 26 H 1.09001 * 109.47615 * 59.99481 * 25 24 23 27 27 C 1.52998 * 109.47286 * 179.97438 * 25 24 23 28 28 C 1.53003 * 117.49667 * 248.74261 * 27 25 24 29 29 C 1.53007 * 117.50011 * 180.08540 * 27 25 24 30 30 H 1.08996 * 109.47589 * 300.00128 * 1 2 3 31 31 H 1.09003 * 109.47523 * 60.00441 * 1 2 3 32 32 H 1.09002 * 109.47103 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46741 * 59.99563 * 3 2 1 34 34 H 1.09004 * 109.46892 * 299.99820 * 3 2 1 35 35 H 1.08997 * 109.47295 * 304.99800 * 4 3 2 36 36 H 1.09003 * 109.47382 * 184.99873 * 4 3 2 37 37 H 0.97005 * 119.99115 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.46981 * 329.40333 * 14 5 4 39 39 H 1.08996 * 109.47452 * 209.40028 * 14 5 4 40 40 H 1.09000 * 109.47075 * 60.00255 * 15 14 5 41 41 H 1.08994 * 109.47592 * 299.99925 * 15 14 5 42 42 H 0.96997 * 120.00253 * 359.97438 * 16 15 14 43 43 H 1.09005 * 109.46670 * 300.00043 * 21 19 17 44 44 H 1.09000 * 109.47456 * 179.97438 * 21 19 17 45 45 H 1.09000 * 109.47402 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.47099 * 300.00495 * 22 21 19 47 47 H 1.09001 * 109.46585 * 59.99763 * 23 22 21 48 48 H 1.08996 * 109.46912 * 180.02562 * 23 22 21 49 49 H 1.09000 * 109.47456 * 299.99792 * 24 23 22 50 50 H 1.08997 * 109.47303 * 179.97438 * 24 23 22 51 51 H 1.08997 * 115.55312 * 34.41715 * 27 25 24 52 52 H 1.09000 * 117.49764 * 0.02562 * 28 27 25 53 53 H 1.09003 * 117.49588 * 145.01883 * 28 27 25 54 54 H 1.08993 * 117.49901 * 214.97993 * 29 27 25 55 55 H 1.09002 * 117.49272 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0978 -0.7974 -1.3344 7 1 3.8764 -1.3033 -2.2625 8 6 4.5052 -1.5272 -0.2261 9 7 5.1945 -0.9419 0.7302 10 14 4.0752 -3.3401 -0.0921 11 1 4.6629 -4.0746 -1.2411 12 1 4.6223 -3.8862 1.1759 13 1 2.5990 -3.5009 -0.1047 14 6 4.2882 1.3998 -2.4130 15 6 5.7648 1.7984 -2.3733 16 7 6.0763 2.6348 -3.5351 17 6 7.3268 3.1060 -3.7104 18 8 8.1940 2.8381 -2.9061 19 6 7.6473 3.9658 -4.9059 20 1 7.4460 3.4069 -5.8198 21 6 6.7786 5.2249 -4.8761 22 6 7.0611 6.0093 -3.5933 23 6 8.5379 6.4076 -3.5538 24 6 9.4066 5.1485 -3.5835 25 6 9.1241 4.3641 -4.8664 26 1 9.3558 4.9859 -5.7311 27 6 9.9932 3.1053 -4.8964 28 6 11.1113 3.0436 -5.9391 29 6 9.8576 2.1819 -6.1088 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6884 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8507 0.5686 0.8427 36 1 3.9784 2.1766 0.0902 37 1 5.4794 -1.4520 1.5045 38 1 3.6690 2.2967 -2.3920 39 1 4.0872 0.8409 -3.3269 40 1 6.3839 0.9016 -2.3943 41 1 5.9659 2.3574 -1.4594 42 1 5.3827 2.8488 -4.1786 43 1 5.7265 4.9411 -4.9042 44 1 7.0107 5.8471 -5.7405 45 1 6.4419 6.9061 -3.5718 46 1 6.8293 5.3874 -2.7286 47 1 8.7697 7.0295 -4.4185 48 1 8.7392 6.9660 -2.6396 49 1 9.1748 4.5266 -2.7189 50 1 10.4586 5.4322 -3.5558 51 1 10.1814 2.6407 -3.9285 52 1 11.2279 3.9000 -6.6033 53 1 12.0350 2.5381 -5.6571 54 1 9.9569 1.1099 -5.9386 55 1 9.1488 2.4710 -6.8848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284658069.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:46 Heat of formation + Delta-G solvation = -71.466352 kcal Electronic energy + Delta-G solvation = -31147.250355 eV Core-core repulsion = 27184.333655 eV Total energy + Delta-G solvation = -3962.916699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.67613 -39.05369 -38.65197 -37.35717 -37.05315 -35.58803 -33.37720 -32.18744 -31.32040 -30.84023 -28.92922 -27.11576 -25.81785 -24.70859 -24.00214 -23.69513 -22.98499 -21.94264 -21.85624 -21.08257 -20.28510 -18.66128 -17.51242 -17.23334 -17.07804 -16.77164 -16.61588 -16.52298 -16.30934 -15.80324 -15.53643 -15.30970 -15.28122 -15.04031 -14.76191 -14.50610 -14.22463 -13.94471 -13.56034 -13.42811 -13.39461 -13.00981 -12.96896 -12.85296 -12.69246 -12.52489 -12.44571 -12.36440 -12.33191 -12.24744 -11.95218 -11.89347 -11.75959 -11.62587 -11.52379 -11.33742 -11.26102 -10.80412 -10.58473 -10.46366 -10.32543 -10.26518 -9.87883 -8.58678 -7.76888 -5.32638 1.46328 1.50926 1.57197 1.87097 2.33998 2.60296 2.94380 3.22550 3.37018 3.60713 3.73096 3.80949 3.86454 4.06446 4.12903 4.16613 4.20276 4.29410 4.38265 4.42379 4.46795 4.49543 4.55379 4.56644 4.63435 4.63823 4.69879 4.72285 4.76670 4.78636 4.80358 4.84057 4.90583 4.94239 4.94889 5.03344 5.05094 5.14724 5.16697 5.27842 5.28129 5.28753 5.34897 5.39614 5.43995 5.50178 5.59265 5.71460 5.79571 5.85051 6.45825 6.68385 6.78216 7.21942 7.51840 7.91805 8.38701 9.20874 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.002867 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.298137 B = 9765.206945 C =10981.270594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.058 3.942 4 C 0.136 3.864 5 N -0.585 5.585 6 C -0.243 4.243 7 H 0.053 0.947 8 C -0.028 4.028 9 N -0.919 5.919 10 Si 0.948 3.052 11 H -0.279 1.279 12 H -0.298 1.298 13 H -0.280 1.280 14 C 0.145 3.855 15 C 0.126 3.874 16 N -0.717 5.717 17 C 0.511 3.489 18 O -0.577 6.577 19 C -0.095 4.095 20 H 0.113 0.887 21 C -0.105 4.105 22 C -0.125 4.125 23 C -0.114 4.114 24 C -0.127 4.127 25 C -0.025 4.025 26 H 0.100 0.900 27 C -0.155 4.155 28 C -0.170 4.170 29 C -0.185 4.185 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.247 0.753 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.027 0.973 42 H 0.411 0.589 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.029 0.971 47 H 0.083 0.917 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.058 0.942 51 H 0.074 0.926 52 H 0.113 0.887 53 H 0.087 0.913 54 H 0.075 0.925 55 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.517 16.606 -15.065 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.020 4.020 4 C 0.009 3.991 5 N -0.306 5.306 6 C -0.373 4.373 7 H 0.071 0.929 8 C -0.224 4.224 9 N -0.565 5.565 10 Si 0.777 3.223 11 H -0.206 1.206 12 H -0.225 1.225 13 H -0.206 1.206 14 C 0.018 3.982 15 C -0.001 4.001 16 N -0.370 5.370 17 C 0.300 3.700 18 O -0.457 6.457 19 C -0.117 4.117 20 H 0.131 0.869 21 C -0.142 4.142 22 C -0.162 4.162 23 C -0.151 4.151 24 C -0.165 4.165 25 C -0.044 4.044 26 H 0.118 0.882 27 C -0.173 4.173 28 C -0.207 4.207 29 C -0.222 4.222 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.046 0.954 42 H 0.247 0.753 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.099 0.901 46 H 0.048 0.952 47 H 0.101 0.899 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.092 0.908 52 H 0.132 0.868 53 H 0.105 0.895 54 H 0.094 0.906 55 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.285 16.161 -14.338 21.643 hybrid contribution -0.335 -1.319 0.802 1.579 sum 0.949 14.842 -13.537 20.111 Atomic orbital electron populations 1.22816 0.81618 1.02502 1.00136 1.88157 1.19568 1.28726 1.95189 1.23170 0.96263 0.84019 0.98598 1.21023 0.90112 0.96184 0.91758 1.43856 1.74920 1.02310 1.09468 1.19001 1.37582 0.82978 0.97776 0.92902 1.25520 0.97352 1.00709 0.98866 1.70089 1.37792 1.37087 1.11491 0.85651 0.78181 0.82055 0.76377 1.20554 1.22467 1.20644 1.21149 0.90930 0.94760 0.91371 1.21726 0.99376 0.91987 0.87002 1.46007 1.11738 1.52098 1.27146 1.21289 0.81517 0.79624 0.87617 1.90615 1.47587 1.59907 1.47545 1.21491 0.97509 0.96750 0.95907 0.86871 1.21588 0.99209 0.94339 0.99101 1.21583 0.97025 1.00254 0.97377 1.21514 0.94496 0.96821 1.02264 1.21751 0.99432 0.96794 0.98500 1.20489 0.91156 0.93840 0.98871 0.88198 1.22333 1.02009 0.99155 0.93831 1.23093 0.92595 1.02808 1.02165 1.22967 1.01723 0.96831 1.00702 0.93582 0.93575 0.90236 0.93521 0.93751 0.91190 0.93339 0.94427 0.91310 0.92544 0.96110 0.95432 0.75282 0.90127 0.87938 0.90065 0.95228 0.89869 0.92718 0.92829 0.92320 0.90768 0.86835 0.89475 0.90635 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -17.13 10.18 -148.98 -1.52 -18.64 16 3 C 0.06 2.25 6.28 71.98 0.45 2.70 16 4 C 0.14 6.29 5.73 86.38 0.49 6.79 16 5 N -0.59 -28.33 2.43 -702.02 -1.71 -30.04 16 6 C -0.24 -13.37 8.98 84.03 0.75 -12.61 16 7 H 0.05 2.92 7.93 -2.91 -0.02 2.90 16 8 C -0.03 -1.59 4.95 84.86 0.42 -1.17 16 9 N -0.92 -55.59 11.33 21.65 0.25 -55.35 16 10 Si 0.95 47.03 29.61 68.60 2.03 49.06 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 13 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 14 C 0.14 5.56 5.78 86.38 0.50 6.06 16 15 C 0.13 5.10 6.00 86.38 0.52 5.62 16 16 N -0.72 -21.30 5.45 -463.05 -2.52 -23.82 16 17 C 0.51 15.69 5.36 87.66 0.47 16.16 16 18 O -0.58 -23.51 11.82 -3.02 -0.04 -23.54 16 19 C -0.10 -1.91 2.39 -11.54 -0.03 -1.93 16 20 H 0.11 1.83 7.29 -2.38 -0.02 1.81 16 21 C -0.10 -1.52 5.36 30.59 0.16 -1.35 16 22 C -0.12 -2.32 5.70 30.60 0.17 -2.14 16 23 C -0.11 -2.10 5.92 30.60 0.18 -1.92 16 24 C -0.13 -3.04 4.91 30.59 0.15 -2.89 16 25 C -0.03 -0.52 2.08 -10.79 -0.02 -0.54 16 26 H 0.10 1.50 7.90 -2.39 -0.02 1.48 16 27 C -0.15 -3.86 4.05 -10.79 -0.04 -3.90 16 28 C -0.17 -3.26 10.18 30.62 0.31 -2.95 16 29 C -0.19 -3.97 9.74 30.62 0.30 -3.67 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 3.89 5.33 -2.39 -0.01 3.87 16 36 H 0.05 2.09 8.07 -2.39 -0.02 2.07 16 37 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 38 H 0.07 2.21 8.08 -2.39 -0.02 2.19 16 39 H 0.06 2.08 8.03 -2.39 -0.02 2.06 16 40 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.41 8.86 7.89 -92.71 -0.73 8.13 16 43 H 0.08 0.98 7.56 -2.38 -0.02 0.96 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.03 0.76 7.22 -2.39 -0.02 0.74 16 47 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.05 1.77 5.51 -2.39 -0.01 1.76 16 50 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 51 H 0.07 2.52 6.89 -2.39 -0.02 2.50 16 52 H 0.11 1.64 8.05 -2.39 -0.02 1.62 16 53 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 54 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 55 H 0.11 1.87 7.61 -2.39 -0.02 1.86 16 Total: -1.00 -73.68 422.23 2.65 -71.03 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.11 Total: 27.02 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.04 Total: 4.28 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -3.98 Total: -109.21 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.55 Total: -42.19 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -73.68 2.65 -71.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284658069.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.439 kcal (2) G-P(sol) polarization free energy of solvation -73.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds