Wall clock time and date at job start Tue Mar 31 2020 22:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46497 * 119.99999 * 2 1 4 4 C 1.53010 * 109.46789 * 269.99485 * 3 2 1 5 5 O 1.42895 * 109.46626 * 65.00304 * 4 3 2 6 6 C 1.42909 * 113.99357 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46677 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47400 * 64.99648 * 7 6 5 9 9 C 1.36939 * 120.00077 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99728 * 359.72656 * 9 8 7 11 11 C 1.38815 * 119.99845 * 180.02562 * 9 8 7 12 12 N 1.31617 * 119.99916 * 179.72546 * 11 9 8 13 13 Si 1.86803 * 119.99958 * 359.72107 * 11 9 8 14 14 H 1.48500 * 109.46986 * 90.00489 * 13 11 9 15 15 H 1.48496 * 109.47029 * 210.00506 * 13 11 9 16 16 H 1.48499 * 109.47352 * 330.00336 * 13 11 9 17 17 C 1.34784 * 120.00116 * 179.97438 * 2 1 3 18 18 O 1.21279 * 119.99924 * 180.02562 * 17 2 1 19 19 C 1.50695 * 119.99817 * 0.02562 * 17 2 1 20 20 H 1.09001 * 109.47687 * 300.00262 * 19 17 2 21 21 C 1.53004 * 109.47003 * 60.00278 * 19 17 2 22 22 C 1.53000 * 109.46999 * 179.97438 * 21 19 17 23 23 C 1.52995 * 109.47252 * 299.99520 * 22 21 19 24 24 C 1.52998 * 109.47040 * 59.99904 * 23 22 21 25 25 C 1.52993 * 109.47387 * 300.00284 * 24 23 22 26 26 H 1.09001 * 109.47153 * 299.99968 * 25 24 23 27 27 C 1.53001 * 109.47544 * 179.97438 * 25 24 23 28 28 C 1.53003 * 117.49957 * 128.74435 * 27 25 24 29 29 C 1.53003 * 117.49421 * 60.08718 * 27 25 24 30 30 H 1.09008 * 109.47018 * 90.00898 * 1 2 3 31 31 H 1.09003 * 109.47418 * 209.99913 * 1 2 3 32 32 H 1.08991 * 109.47641 * 330.00373 * 1 2 3 33 33 H 1.09001 * 109.47520 * 150.00168 * 3 2 1 34 34 H 1.08999 * 109.47403 * 29.99552 * 3 2 1 35 35 H 1.08997 * 109.47127 * 305.00021 * 4 3 2 36 36 H 1.09000 * 109.46940 * 184.99750 * 4 3 2 37 37 H 1.08993 * 109.47144 * 60.00234 * 6 5 4 38 38 H 1.08994 * 109.47002 * 299.98966 * 6 5 4 39 39 H 1.09007 * 109.47086 * 304.99550 * 7 6 5 40 40 H 1.09001 * 109.46760 * 184.99627 * 7 6 5 41 41 H 0.97004 * 120.00009 * 0.02562 * 8 7 6 42 42 H 0.97000 * 120.00284 * 179.97438 * 12 11 9 43 43 H 1.09005 * 109.46554 * 299.99111 * 21 19 17 44 44 H 1.08993 * 109.47430 * 59.99841 * 21 19 17 45 45 H 1.09001 * 109.47636 * 60.00017 * 22 21 19 46 46 H 1.09007 * 109.47045 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.47643 * 180.02562 * 23 22 21 48 48 H 1.09001 * 109.46942 * 300.00278 * 23 22 21 49 49 H 1.09001 * 109.46948 * 60.00377 * 24 23 22 50 50 H 1.08999 * 109.47257 * 180.02562 * 24 23 22 51 51 H 1.08995 * 115.55074 * 274.41939 * 27 25 24 52 52 H 1.09004 * 117.49770 * 0.02562 * 28 27 25 53 53 H 1.08997 * 117.49936 * 145.02190 * 28 27 25 54 54 H 1.09001 * 117.49707 * 214.97810 * 29 27 25 55 55 H 1.08998 * 117.50479 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 8 1.2061 1.9934 -2.0815 6 6 1.3325 2.4161 -3.4407 7 6 -0.0566 2.6892 -4.0211 8 7 -0.6657 3.8211 -3.3182 9 6 -1.9178 4.2509 -3.6684 10 1 -2.4544 3.7584 -4.4657 11 6 -2.4947 5.3237 -3.0026 12 7 -3.6960 5.7404 -3.3428 13 14 -1.5662 6.1760 -1.6238 14 1 -0.7518 7.2832 -2.1861 15 1 -2.5342 6.7237 -0.6399 16 1 -0.6745 5.1986 -0.9495 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0010 19 6 1.3854 -2.4723 0.0005 20 1 0.7583 -2.5299 0.8902 21 6 0.5063 -2.5536 -1.2491 22 6 -0.2582 -3.8789 -1.2494 23 6 0.7364 -5.0415 -1.2492 24 6 1.6155 -4.9602 0.0004 25 6 2.3800 -3.6349 0.0007 26 1 3.0070 -3.5769 -0.8890 27 6 3.2587 -3.5533 1.2506 28 6 4.7366 -3.2094 1.0540 29 6 4.3261 -4.6339 1.4354 30 1 -0.3633 -0.0002 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5137 33 1 3.1499 1.1384 0.5138 34 1 1.6084 2.0284 0.5137 35 1 2.9642 0.9129 -1.9815 36 1 3.0732 2.6063 -1.4439 37 1 1.8207 1.6331 -4.0208 38 1 1.9301 3.3267 -3.4839 39 1 -0.6823 1.8053 -3.8973 40 1 0.0328 2.9256 -5.0814 41 1 -0.1818 4.2665 -2.6052 42 1 -4.0993 6.4898 -2.8774 43 1 -0.2021 -1.7251 -1.2494 44 1 1.1333 -2.4961 -2.1388 45 1 -0.8853 -3.9370 -0.3597 46 1 -0.8849 -3.9367 -2.1395 47 1 0.1917 -5.9857 -1.2499 48 1 1.3633 -4.9834 -2.1389 49 1 0.9886 -5.0182 0.8901 50 1 2.3244 -5.7881 0.0004 51 1 2.7681 -3.1721 2.1461 52 1 5.0828 -3.0409 0.0342 53 1 5.2183 -2.6022 1.8203 54 1 4.5380 -4.9632 2.4527 55 1 4.4020 -5.4031 0.6670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284875493.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:47 Heat of formation + Delta-G solvation = -72.974994 kcal Electronic energy + Delta-G solvation = -31200.256735 eV Core-core repulsion = 27237.274616 eV Total energy + Delta-G solvation = -3962.982119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65383 -39.53064 -38.78038 -37.29356 -36.75458 -36.10004 -33.67930 -32.62539 -31.36437 -30.87133 -29.50250 -27.50591 -25.31780 -25.07223 -24.26017 -23.48661 -22.85765 -22.80017 -21.13173 -20.88446 -19.99843 -19.73725 -18.15525 -17.62034 -17.34394 -17.07527 -16.60047 -16.49981 -16.06569 -15.77707 -15.67306 -15.11788 -15.00190 -14.83883 -14.76523 -14.57923 -14.19372 -14.15430 -13.97834 -13.76760 -13.44398 -13.37482 -13.16697 -12.94341 -12.82589 -12.73747 -12.63054 -12.42276 -12.33902 -12.17909 -12.14432 -11.92517 -11.87388 -11.72820 -11.57430 -11.31860 -11.26438 -11.00566 -10.94871 -10.75209 -10.57527 -10.20920 -9.58619 -9.28147 -8.01246 -5.33897 1.39382 1.41874 1.50608 1.70227 2.08665 2.50175 2.74252 3.02461 3.30844 3.53658 3.57745 3.66659 3.73956 4.02827 4.04981 4.09616 4.16446 4.18478 4.24949 4.28818 4.30069 4.37896 4.39499 4.45177 4.48300 4.50441 4.52546 4.55920 4.59711 4.61643 4.70103 4.74971 4.81065 4.84595 4.87549 4.97485 5.01729 5.02956 5.10308 5.15175 5.18890 5.24559 5.27293 5.34329 5.35935 5.41780 5.45462 5.55046 5.61749 5.76070 6.21104 6.27690 6.48531 7.09508 7.26309 7.85715 8.06012 9.20293 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.002635 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.825286 B =10623.657113 C =11328.775580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.609 5.609 3 C 0.119 3.881 4 C 0.047 3.953 5 O -0.391 6.391 6 C 0.064 3.936 7 C 0.156 3.844 8 N -0.753 5.753 9 C -0.233 4.233 10 H 0.057 0.943 11 C -0.064 4.064 12 N -0.984 5.984 13 Si 0.956 3.044 14 H -0.280 1.280 15 H -0.295 1.295 16 H -0.252 1.252 17 C 0.511 3.489 18 O -0.559 6.559 19 C -0.090 4.090 20 H 0.109 0.891 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.121 4.121 24 C -0.105 4.105 25 C -0.029 4.029 26 H 0.054 0.946 27 C -0.139 4.139 28 C -0.158 4.158 29 C -0.176 4.176 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.027 0.973 40 H 0.046 0.954 41 H 0.367 0.633 42 H 0.258 0.742 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.053 0.947 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.092 0.908 52 H 0.076 0.924 53 H 0.078 0.922 54 H 0.099 0.901 55 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.139 -23.903 10.877 30.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.341 5.341 3 C -0.004 4.004 4 C -0.030 4.030 5 O -0.311 6.311 6 C -0.013 4.013 7 C 0.029 3.971 8 N -0.399 5.399 9 C -0.364 4.364 10 H 0.075 0.925 11 C -0.256 4.256 12 N -0.635 5.635 13 Si 0.783 3.217 14 H -0.206 1.206 15 H -0.222 1.222 16 H -0.176 1.176 17 C 0.300 3.700 18 O -0.437 6.437 19 C -0.111 4.111 20 H 0.127 0.873 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.158 4.158 24 C -0.143 4.143 25 C -0.048 4.048 26 H 0.072 0.928 27 C -0.157 4.157 28 C -0.196 4.196 29 C -0.213 4.213 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.200 0.800 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.111 0.889 52 H 0.094 0.906 53 H 0.096 0.904 54 H 0.117 0.883 55 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.418 -23.940 10.842 30.469 hybrid contribution 0.364 1.272 0.261 1.349 sum 15.782 -22.668 11.103 29.769 Atomic orbital electron populations 1.21999 0.78276 1.03524 1.02175 1.47852 1.07800 1.05504 1.72947 1.21518 0.98646 0.85433 0.94797 1.22950 0.86388 0.99380 0.94299 1.87970 1.29755 1.87693 1.25657 1.22679 0.96742 0.98940 0.82922 1.20822 0.91894 0.89466 0.94869 1.42628 1.16992 1.37560 1.42706 1.19053 0.92593 1.10693 1.14026 0.92520 1.25490 0.97486 0.99921 1.02660 1.69884 1.17295 1.30270 1.46060 0.85391 0.78042 0.78811 0.79472 1.20603 1.22204 1.17613 1.21139 0.87915 0.85913 0.75041 1.90673 1.14785 1.87643 1.50597 1.21343 0.97429 0.90968 1.01341 0.87286 1.21770 0.98467 0.99962 0.95596 1.21520 0.97662 0.93099 1.02916 1.21571 0.97649 0.98769 0.97815 1.21537 0.98447 0.95675 0.98628 1.20457 0.94462 0.93774 0.96067 0.92782 1.22115 0.91027 1.03770 0.98779 1.22631 0.97882 0.97743 1.01295 1.23082 1.03330 0.92041 1.02809 0.92632 0.89024 0.91331 0.88400 0.89343 0.93929 0.91580 0.91038 0.92711 0.95510 0.93592 0.79978 0.93357 0.90086 0.93284 0.90595 0.91394 0.90618 0.92827 0.90912 0.91155 0.88935 0.90566 0.90384 0.88252 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.66 8.45 127.77 1.08 2.74 16 2 N -0.61 -13.58 2.84 -846.75 -2.40 -15.98 16 3 C 0.12 2.71 5.86 86.38 0.51 3.22 16 4 C 0.05 1.17 6.28 71.99 0.45 1.63 16 5 O -0.39 -11.95 9.85 -148.98 -1.47 -13.42 16 6 C 0.06 1.89 6.07 71.98 0.44 2.33 16 7 C 0.16 5.91 6.64 86.38 0.57 6.48 16 8 N -0.75 -35.71 5.35 -343.44 -1.84 -37.55 16 9 C -0.23 -13.43 10.47 84.03 0.88 -12.55 16 10 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 11 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 12 N -0.98 -63.42 13.97 21.65 0.30 -63.12 16 13 Si 0.96 45.89 27.73 68.60 1.90 47.79 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 15 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 16 H -0.25 -11.02 6.53 99.48 0.65 -10.37 16 17 C 0.51 11.71 6.80 87.65 0.60 12.31 16 18 O -0.56 -15.60 12.74 -3.03 -0.04 -15.64 16 19 C -0.09 -1.55 1.24 -11.54 -0.01 -1.56 16 20 H 0.11 1.56 7.40 -2.39 -0.02 1.54 16 21 C -0.12 -2.01 4.84 30.60 0.15 -1.86 16 22 C -0.11 -1.48 5.92 30.59 0.18 -1.30 16 23 C -0.12 -1.47 5.92 30.59 0.18 -1.29 16 24 C -0.11 -1.32 5.04 30.59 0.15 -1.17 16 25 C -0.03 -0.49 1.52 -10.79 -0.02 -0.50 16 26 H 0.05 1.16 7.86 -2.39 -0.02 1.14 16 27 C -0.14 -2.48 4.07 -10.79 -0.04 -2.53 16 28 C -0.16 -3.25 8.32 30.62 0.25 -2.99 16 29 C -0.18 -2.71 9.74 30.62 0.30 -2.41 16 30 H 0.06 1.30 6.95 -2.38 -0.02 1.28 16 31 H 0.09 1.34 6.01 -2.39 -0.01 1.33 16 32 H 0.07 1.44 7.89 -2.39 -0.02 1.42 16 33 H 0.10 2.16 7.42 -2.39 -0.02 2.15 16 34 H 0.09 1.95 7.89 -2.39 -0.02 1.93 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.37 16.84 5.54 -92.71 -0.51 16.33 16 42 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 43 H 0.08 1.41 4.53 -2.38 -0.01 1.40 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.07 0.82 7.29 -2.39 -0.02 0.81 16 51 H 0.09 1.67 8.11 -2.39 -0.02 1.65 16 52 H 0.08 1.81 7.90 -2.38 -0.02 1.79 16 53 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 54 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 55 H 0.10 1.35 7.61 -2.39 -0.02 1.33 16 Total: -1.00 -70.97 418.66 2.87 -68.10 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.28 Total: 32.63 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 6.13 Total: -2.81 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -3.94 Total: -116.65 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -1.51 Total: -29.06 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Total: -70.97 2.87 -68.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284875493.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.879 kcal (2) G-P(sol) polarization free energy of solvation -70.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds