Wall clock time and date at job start Tue Mar 31 2020 22:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46500 * 120.00254 * 2 1 4 4 C 1.52992 * 109.47424 * 270.00339 * 3 2 1 5 5 O 1.42905 * 109.47297 * 64.99481 * 4 3 2 6 6 C 1.42900 * 114.00157 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46996 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47380 * 64.99972 * 7 6 5 9 9 C 1.36936 * 119.99609 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00310 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99632 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00019 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99916 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46920 * 60.00415 * 13 11 9 15 15 H 1.48498 * 109.47193 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47383 * 300.00271 * 13 11 9 17 17 C 1.34774 * 120.00423 * 180.02562 * 2 1 3 18 18 O 1.21275 * 120.00636 * 185.91237 * 17 2 1 19 19 C 1.50711 * 119.99844 * 5.90691 * 17 2 1 20 20 H 1.09000 * 109.46754 * 305.79655 * 19 17 2 21 21 C 1.52999 * 109.46827 * 65.79291 * 19 17 2 22 22 C 1.53006 * 109.47062 * 60.00057 * 21 19 17 23 23 C 1.53007 * 109.46961 * 59.99887 * 22 21 19 24 24 C 1.52998 * 109.46954 * 299.99992 * 23 22 21 25 25 C 1.52998 * 109.46921 * 185.79549 * 19 17 2 26 26 H 1.09007 * 109.46391 * 180.02562 * 25 19 17 27 27 C 1.52998 * 109.47211 * 60.00243 * 25 19 17 28 28 C 1.53004 * 117.49685 * 128.62277 * 27 25 19 29 29 C 1.52999 * 117.49823 * 59.99885 * 27 25 19 30 30 H 1.09001 * 109.47272 * 270.56280 * 1 2 3 31 31 H 1.09005 * 109.47350 * 30.56916 * 1 2 3 32 32 H 1.09004 * 109.47037 * 150.56482 * 1 2 3 33 33 H 1.09005 * 109.46889 * 30.00054 * 3 2 1 34 34 H 1.08997 * 109.47643 * 149.99880 * 3 2 1 35 35 H 1.09000 * 109.47402 * 184.99465 * 4 3 2 36 36 H 1.08999 * 109.47389 * 304.99788 * 4 3 2 37 37 H 1.09008 * 109.47153 * 299.99884 * 6 5 4 38 38 H 1.08994 * 109.47501 * 59.99894 * 6 5 4 39 39 H 1.08998 * 109.46975 * 185.00243 * 7 6 5 40 40 H 1.09003 * 109.46915 * 304.99429 * 7 6 5 41 41 H 0.96995 * 119.99959 * 359.97438 * 8 7 6 42 42 H 0.97004 * 119.99728 * 179.97438 * 12 11 9 43 43 H 1.08994 * 109.47473 * 300.00433 * 21 19 17 44 44 H 1.09001 * 109.47178 * 179.97438 * 21 19 17 45 45 H 1.09000 * 109.47071 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.47121 * 300.00188 * 22 21 19 47 47 H 1.08998 * 109.47083 * 59.99660 * 23 22 21 48 48 H 1.08995 * 109.46921 * 179.97438 * 23 22 21 49 49 H 1.09004 * 109.46987 * 179.97438 * 24 23 22 50 50 H 1.08998 * 109.47459 * 299.99901 * 24 23 22 51 51 H 1.08998 * 115.55045 * 274.32450 * 27 25 19 52 52 H 1.08996 * 117.49968 * 359.97438 * 28 27 25 53 53 H 1.08998 * 117.49864 * 145.02518 * 28 27 25 54 54 H 1.08999 * 117.49537 * 214.97455 * 29 27 25 55 55 H 1.08997 * 117.49921 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4424 5 8 1.2059 1.9936 -2.0813 6 6 1.3323 2.4165 -3.4404 7 6 -0.0567 2.6908 -4.0204 8 7 -0.6648 3.8230 -3.3171 9 6 -1.9166 4.2539 -3.6669 10 1 -2.4558 3.7588 -4.4609 11 6 -2.4930 5.3264 -3.0001 12 7 -1.8360 5.9294 -2.0320 13 14 -4.2004 5.9146 -3.4777 14 1 -5.1750 4.8099 -3.2902 15 1 -4.5850 7.0653 -2.6216 16 1 -4.1984 6.3365 -4.9015 17 6 2.1389 -1.1671 -0.0005 18 8 3.3468 -1.1700 0.1077 19 6 1.3914 -2.4688 -0.1354 20 1 0.6177 -2.5245 0.6304 21 6 0.7448 -2.5445 -1.5200 22 6 1.8308 -2.4661 -2.5950 23 6 2.8045 -3.6337 -2.4223 24 6 3.4510 -3.5580 -1.0376 25 6 2.3651 -3.6363 0.0373 26 1 1.8244 -4.5777 -0.0607 27 6 3.0115 -3.5606 1.4220 28 6 2.9724 -4.8202 2.2897 29 6 2.0856 -3.6231 2.6383 30 1 -0.3634 0.0101 1.0276 31 1 -0.3634 0.8849 -0.5227 32 1 -0.3633 -0.8950 -0.5051 33 1 1.6084 2.0284 0.5139 34 1 3.1499 1.1384 0.5138 35 1 3.0731 2.6065 -1.4437 36 1 2.9641 0.9132 -1.9815 37 1 1.9299 3.3272 -3.4836 38 1 1.8206 1.6337 -4.0207 39 1 0.0325 2.9272 -5.0807 40 1 -0.6831 1.8073 -3.8966 41 1 -0.1806 4.2674 -2.6037 42 1 -2.2386 6.6791 -1.5664 43 1 0.0513 -1.7127 -1.6431 44 1 0.2046 -3.4861 -1.6178 45 1 1.3703 -2.5205 -3.5814 46 1 2.3715 -1.5248 -2.4973 47 1 2.2639 -4.5751 -2.5198 48 1 3.5779 -3.5782 -3.1883 49 1 4.1443 -4.3901 -0.9144 50 1 3.9916 -2.6166 -0.9400 51 1 3.8952 -2.9266 1.4942 52 1 2.4857 -5.7026 1.8743 53 1 3.8304 -5.0150 2.9330 54 1 2.3603 -3.0305 3.5109 55 1 1.0159 -3.7185 2.4521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284875494.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:51 Heat of formation + Delta-G solvation = -68.885611 kcal Electronic energy + Delta-G solvation = -31574.718898 eV Core-core repulsion = 27611.914109 eV Total energy + Delta-G solvation = -3962.804790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92765 -39.42189 -38.59199 -37.11129 -36.72607 -36.10177 -33.47227 -32.48339 -31.35893 -30.71591 -29.22419 -27.47902 -25.54202 -25.15652 -24.04643 -23.68080 -22.84846 -22.76143 -21.49625 -21.13647 -19.62127 -19.22346 -18.00771 -17.54016 -17.26816 -16.74669 -16.70910 -16.68471 -16.11144 -15.84849 -15.56142 -15.24008 -15.03679 -14.89428 -14.52508 -14.47210 -14.25984 -14.10774 -13.84519 -13.57192 -13.34369 -13.20392 -13.09295 -12.98394 -12.77679 -12.69414 -12.58709 -12.50622 -12.42823 -12.29229 -12.14910 -11.89627 -11.87103 -11.71734 -11.61565 -11.34797 -11.19668 -10.93576 -10.81942 -10.60045 -10.54150 -10.17645 -9.54468 -8.96271 -7.90988 -5.19551 1.48897 1.52109 1.58186 1.72953 2.11316 2.58710 2.78044 2.93739 3.42602 3.49420 3.69639 3.81243 3.95379 3.97093 4.07475 4.08997 4.09438 4.14228 4.19382 4.30623 4.32145 4.41780 4.46315 4.46735 4.48235 4.51045 4.56636 4.61205 4.65621 4.69039 4.69915 4.74797 4.81035 4.85045 4.88604 4.98359 5.01364 5.04849 5.05630 5.15018 5.21037 5.25992 5.28655 5.31716 5.36738 5.43173 5.48658 5.50946 5.57595 5.74310 6.28357 6.32746 6.54390 7.30518 7.36909 8.12953 8.37361 9.32380 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.002535 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.193365 B =11041.796477 C =11315.308642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.607 5.607 3 C 0.120 3.880 4 C 0.050 3.950 5 O -0.387 6.387 6 C 0.067 3.933 7 C 0.153 3.847 8 N -0.739 5.739 9 C -0.245 4.245 10 H 0.076 0.924 11 C -0.076 4.076 12 N -0.969 5.969 13 Si 0.974 3.026 14 H -0.277 1.277 15 H -0.296 1.296 16 H -0.278 1.278 17 C 0.523 3.477 18 O -0.563 6.563 19 C -0.096 4.096 20 H 0.106 0.894 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.126 4.126 25 C -0.026 4.026 26 H 0.090 0.910 27 C -0.150 4.150 28 C -0.173 4.173 29 C -0.185 4.185 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.025 0.975 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.034 0.966 47 H 0.075 0.925 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.071 0.929 51 H 0.087 0.913 52 H 0.105 0.895 53 H 0.092 0.908 54 H 0.084 0.916 55 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 -23.918 5.155 26.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.339 5.339 3 C -0.003 4.003 4 C -0.027 4.027 5 O -0.306 6.306 6 C -0.009 4.009 7 C 0.027 3.973 8 N -0.382 5.382 9 C -0.376 4.376 10 H 0.094 0.906 11 C -0.268 4.268 12 N -0.620 5.620 13 Si 0.802 3.198 14 H -0.203 1.203 15 H -0.223 1.223 16 H -0.204 1.204 17 C 0.313 3.687 18 O -0.443 6.443 19 C -0.117 4.117 20 H 0.123 0.877 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.163 4.163 25 C -0.045 4.045 26 H 0.108 0.892 27 C -0.168 4.168 28 C -0.210 4.210 29 C -0.222 4.222 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.053 0.947 47 H 0.093 0.907 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.105 0.895 52 H 0.124 0.876 53 H 0.110 0.890 54 H 0.103 0.897 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.640 -23.940 5.202 26.327 hybrid contribution -0.290 1.263 0.035 1.296 sum 9.350 -22.677 5.237 25.082 Atomic orbital electron populations 1.22188 0.78402 1.04599 1.02263 1.47821 1.07752 1.05409 1.72909 1.21446 0.98538 0.85584 0.94781 1.22908 0.86529 0.99084 0.94201 1.87980 1.29425 1.87546 1.25676 1.22621 0.97079 0.98283 0.82944 1.20834 0.91846 0.89970 0.94657 1.42469 1.17305 1.36102 1.42361 1.19611 0.93617 1.10497 1.13922 0.90627 1.25568 1.02537 0.99570 0.99152 1.69832 1.39510 1.25500 1.27142 0.85212 0.79952 0.77314 0.77279 1.20290 1.22267 1.20417 1.20978 0.87609 0.85706 0.74398 1.90536 1.15516 1.87327 1.50935 1.21414 0.98633 0.91600 1.00045 0.87650 1.21778 0.97776 1.04108 0.91805 1.21514 0.96944 0.98103 0.99137 1.21508 0.98326 0.98464 0.96785 1.21805 0.97887 1.02916 0.93731 1.20478 0.94853 0.96629 0.92513 0.89218 1.22311 1.01460 1.01473 0.91602 1.23072 1.02307 0.92409 1.03169 1.22967 0.97855 1.02471 0.98933 0.91790 0.91842 0.88505 0.89887 0.88474 0.92165 0.93798 0.93794 0.91196 0.94147 0.95704 0.79342 0.94113 0.90618 0.88581 0.91203 0.94723 0.90678 0.92411 0.92184 0.91101 0.89504 0.87644 0.88958 0.89721 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.54 9.73 127.77 1.24 2.78 16 2 N -0.61 -15.01 2.84 -846.77 -2.40 -17.41 16 3 C 0.12 3.15 5.86 86.38 0.51 3.66 16 4 C 0.05 1.42 6.28 71.98 0.45 1.87 16 5 O -0.39 -13.16 9.10 -148.98 -1.36 -14.52 16 6 C 0.07 2.23 6.07 71.98 0.44 2.66 16 7 C 0.15 6.16 6.64 86.38 0.57 6.73 16 8 N -0.74 -38.20 5.55 -343.45 -1.91 -40.11 16 9 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 10 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 11 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 12 N -0.97 -59.82 13.06 21.65 0.28 -59.54 16 13 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 15 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 C 0.52 12.68 5.18 87.66 0.45 13.14 16 18 O -0.56 -16.46 11.40 -3.01 -0.03 -16.49 16 19 C -0.10 -1.73 1.56 -11.54 -0.02 -1.74 16 20 H 0.11 1.62 6.91 -2.39 -0.02 1.60 16 21 C -0.12 -1.94 5.09 30.60 0.16 -1.79 16 22 C -0.12 -2.28 5.70 30.60 0.17 -2.10 16 23 C -0.11 -1.93 5.92 30.60 0.18 -1.75 16 24 C -0.13 -2.46 4.91 30.59 0.15 -2.31 16 25 C -0.03 -0.45 2.08 -10.79 -0.02 -0.47 16 26 H 0.09 1.23 7.90 -2.38 -0.02 1.21 16 27 C -0.15 -2.83 4.11 -10.79 -0.04 -2.87 16 28 C -0.17 -2.54 10.18 30.60 0.31 -2.23 16 29 C -0.19 -2.99 9.73 30.60 0.30 -2.70 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.85 7.11 -2.38 -0.02 1.83 16 32 H 0.10 1.81 4.00 -2.38 -0.01 1.80 16 33 H 0.08 2.24 8.07 -2.38 -0.02 2.22 16 34 H 0.10 2.48 7.35 -2.39 -0.02 2.47 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.37 20.89 7.67 -92.71 -0.71 20.18 16 42 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.08 1.37 5.26 -2.39 -0.01 1.35 16 44 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.03 0.85 7.22 -2.39 -0.02 0.83 16 47 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 48 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 50 H 0.07 1.84 5.31 -2.39 -0.01 1.82 16 51 H 0.09 2.14 7.04 -2.39 -0.02 2.12 16 52 H 0.11 1.25 8.05 -2.39 -0.02 1.23 16 53 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 54 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 55 H 0.10 1.41 7.61 -2.39 -0.02 1.39 16 Total: -1.00 -67.73 416.98 2.92 -64.81 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: 0.15 Total: 39.08 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 6.16 Total: -3.96 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -4.03 Total: -117.05 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -1.39 Total: -31.01 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -67.73 2.92 -64.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284875494.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.077 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds