Wall clock time and date at job start Tue Mar 31 2020 22:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46500 * 119.99872 * 2 1 4 4 C 1.53006 * 109.46988 * 270.00063 * 3 2 1 5 5 O 1.42904 * 109.47042 * 65.00529 * 4 3 2 6 6 C 1.42891 * 114.00105 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47350 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47096 * 64.99861 * 7 6 5 9 9 C 1.36929 * 120.00094 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99867 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00024 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00183 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99980 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47185 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47140 * 119.99614 * 13 11 9 16 16 H 1.48507 * 109.46827 * 239.99331 * 13 11 9 17 17 C 1.34777 * 120.00382 * 180.02562 * 2 1 3 18 18 O 1.21282 * 120.00345 * 179.97438 * 17 2 1 19 19 C 1.50699 * 119.99614 * 359.97438 * 17 2 1 20 20 H 1.09004 * 109.47103 * 60.00237 * 19 17 2 21 21 C 1.53002 * 109.47389 * 300.00226 * 19 17 2 22 22 C 1.52997 * 109.46978 * 300.00250 * 21 19 17 23 23 C 1.53006 * 109.47164 * 299.99874 * 22 21 19 24 24 C 1.52997 * 109.47127 * 59.99836 * 23 22 21 25 25 C 1.52996 * 109.47235 * 180.02562 * 19 17 2 26 26 H 1.09001 * 109.47372 * 180.02562 * 25 19 17 27 27 C 1.53001 * 109.47302 * 299.99905 * 25 19 17 28 28 C 1.52994 * 117.50199 * 248.75000 * 27 25 19 29 29 C 1.52999 * 117.50246 * 180.08578 * 27 25 19 30 30 H 1.09010 * 109.46973 * 269.99475 * 1 2 3 31 31 H 1.09002 * 109.47753 * 29.99466 * 1 2 3 32 32 H 1.09002 * 109.47831 * 150.00028 * 1 2 3 33 33 H 1.08993 * 109.47349 * 30.00347 * 3 2 1 34 34 H 1.09005 * 109.47039 * 150.00522 * 3 2 1 35 35 H 1.08998 * 109.46688 * 184.99949 * 4 3 2 36 36 H 1.08997 * 109.47377 * 304.99812 * 4 3 2 37 37 H 1.09006 * 109.47057 * 299.99968 * 6 5 4 38 38 H 1.08997 * 109.47571 * 59.99504 * 6 5 4 39 39 H 1.08993 * 109.46908 * 184.99747 * 7 6 5 40 40 H 1.08998 * 109.46593 * 305.00279 * 7 6 5 41 41 H 0.97001 * 119.99745 * 359.97438 * 8 7 6 42 42 H 0.96999 * 120.00141 * 180.02562 * 12 11 9 43 43 H 1.09002 * 109.47097 * 60.00051 * 21 19 17 44 44 H 1.09001 * 109.47142 * 180.02562 * 21 19 17 45 45 H 1.09001 * 109.47375 * 59.99908 * 22 21 19 46 46 H 1.09000 * 109.47140 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.46505 * 299.99708 * 23 22 21 48 48 H 1.08996 * 109.46884 * 180.02562 * 23 22 21 49 49 H 1.09002 * 109.47153 * 180.02562 * 24 23 22 50 50 H 1.09001 * 109.46832 * 60.00321 * 24 23 22 51 51 H 1.09006 * 115.54462 * 34.41409 * 27 25 19 52 52 H 1.09002 * 117.50116 * 359.97438 * 28 27 25 53 53 H 1.08997 * 117.50282 * 145.01669 * 28 27 25 54 54 H 1.09003 * 117.49621 * 214.98134 * 29 27 25 55 55 H 1.08998 * 117.50039 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 8 1.2058 1.9936 -2.0814 6 6 1.3321 2.4176 -3.4401 7 6 -0.0570 2.6907 -4.0205 8 7 -0.6665 3.8218 -3.3166 9 6 -1.9191 4.2508 -3.6658 10 1 -2.4575 3.7557 -4.4604 11 6 -2.4964 5.3229 -2.9993 12 7 -1.8401 5.9266 -2.0312 13 14 -4.2049 5.9087 -3.4762 14 1 -4.7243 5.0693 -4.5856 15 1 -5.1111 5.7978 -2.3050 16 1 -4.1373 7.3251 -3.9174 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1671 -0.0010 19 6 1.3854 -2.4722 -0.0005 20 1 0.7584 -2.5298 -0.8903 21 6 0.5062 -2.5536 1.2490 22 6 1.3862 -2.4728 2.4979 23 6 2.3805 -3.6357 2.4974 24 6 3.2597 -3.5544 1.2478 25 6 2.3796 -3.6352 -0.0005 26 1 1.8346 -4.5792 -0.0010 27 6 3.2592 -3.5542 -1.2498 28 6 3.0718 -4.6343 -2.3170 29 6 4.3235 -4.6374 -1.4359 30 1 -0.3633 -0.0001 1.0278 31 1 -0.3635 0.8900 -0.5137 32 1 -0.3635 -0.8900 -0.5138 33 1 1.6084 2.0283 0.5138 34 1 3.1499 1.1384 0.5138 35 1 3.0730 2.6064 -1.4438 36 1 2.9641 0.9132 -1.9816 37 1 1.9295 3.3284 -3.4825 38 1 1.8208 1.6354 -4.0209 39 1 0.0324 2.9279 -5.0805 40 1 -0.6823 1.8065 -3.8974 41 1 -0.1831 4.2662 -2.6027 42 1 -2.2437 6.6755 -1.5652 43 1 -0.2022 -1.7251 1.2494 44 1 -0.0385 -3.4978 1.2492 45 1 1.9312 -1.5288 2.4980 46 1 0.7598 -2.5303 3.3881 47 1 1.8355 -4.5796 2.4974 48 1 3.0072 -3.5783 3.3873 49 1 3.9677 -4.3831 1.2472 50 1 3.8047 -2.6104 1.2479 51 1 3.5011 -2.5472 -1.5899 52 1 2.3222 -5.4029 -2.1290 53 1 3.1908 -4.3381 -3.3592 54 1 5.2655 -4.3432 -1.8988 55 1 4.3974 -5.4076 -0.6681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284875495.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:55 Heat of formation + Delta-G solvation = -71.327022 kcal Electronic energy + Delta-G solvation = -31251.150399 eV Core-core repulsion = 27288.239741 eV Total energy + Delta-G solvation = -3962.910657 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.94254 -39.44651 -38.61561 -37.13507 -36.73840 -36.10507 -33.47879 -32.49921 -31.31790 -30.68033 -29.23361 -27.52887 -25.55016 -25.10466 -24.27959 -23.51305 -22.89193 -22.76404 -21.44860 -21.09304 -19.65769 -19.23534 -17.97936 -17.53312 -17.31966 -16.83227 -16.77690 -16.61321 -16.08179 -15.90772 -15.50637 -15.19525 -15.06856 -14.79865 -14.62269 -14.49786 -14.22813 -14.04239 -13.85719 -13.52734 -13.37966 -13.23243 -13.07887 -12.94269 -12.79777 -12.76151 -12.60620 -12.53370 -12.45097 -12.34813 -12.08693 -11.91647 -11.83840 -11.69094 -11.61079 -11.29118 -11.22651 -10.96736 -10.83570 -10.58783 -10.52982 -10.23245 -9.55854 -8.97224 -7.91839 -5.20506 1.48984 1.49778 1.59969 1.71694 2.09175 2.58031 2.76882 2.96846 3.42027 3.46932 3.71660 3.75853 3.94718 3.98495 4.06857 4.11490 4.12221 4.16462 4.19645 4.28629 4.33590 4.41678 4.44954 4.47129 4.48375 4.52452 4.57542 4.63121 4.64197 4.67036 4.70236 4.76219 4.78991 4.83495 4.89440 4.96837 4.99788 5.04698 5.09428 5.13081 5.18491 5.26750 5.29106 5.31002 5.38142 5.41848 5.50456 5.50857 5.54833 5.72294 6.27353 6.31579 6.52108 7.27771 7.36291 8.11711 8.36473 9.31916 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.002478 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.715903 B =11296.012849 C =11856.402975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.606 5.606 3 C 0.121 3.879 4 C 0.049 3.951 5 O -0.389 6.389 6 C 0.067 3.933 7 C 0.153 3.847 8 N -0.740 5.740 9 C -0.243 4.243 10 H 0.076 0.924 11 C -0.076 4.076 12 N -0.969 5.969 13 Si 0.974 3.026 14 H -0.266 1.266 15 H -0.293 1.293 16 H -0.294 1.294 17 C 0.519 3.481 18 O -0.563 6.563 19 C -0.097 4.097 20 H 0.102 0.898 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.026 4.026 26 H 0.089 0.911 27 C -0.151 4.151 28 C -0.181 4.181 29 C -0.177 4.177 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.024 0.976 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.037 0.963 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.085 0.915 52 H 0.106 0.894 53 H 0.088 0.912 54 H 0.085 0.915 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.454 -23.888 7.214 26.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.338 5.338 3 C -0.002 4.002 4 C -0.028 4.028 5 O -0.308 6.308 6 C -0.010 4.010 7 C 0.026 3.974 8 N -0.383 5.383 9 C -0.375 4.375 10 H 0.094 0.906 11 C -0.268 4.268 12 N -0.620 5.620 13 Si 0.803 3.197 14 H -0.190 1.190 15 H -0.220 1.220 16 H -0.221 1.221 17 C 0.309 3.691 18 O -0.443 6.443 19 C -0.118 4.118 20 H 0.120 0.880 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.159 4.159 25 C -0.045 4.045 26 H 0.107 0.893 27 C -0.170 4.170 28 C -0.217 4.217 29 C -0.214 4.214 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.056 0.944 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.083 0.917 51 H 0.103 0.897 52 H 0.124 0.876 53 H 0.106 0.894 54 H 0.104 0.896 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.749 -23.922 7.189 26.814 hybrid contribution -0.215 1.206 -0.260 1.252 sum 9.533 -22.717 6.928 25.592 Atomic orbital electron populations 1.22039 0.78299 1.03793 1.02141 1.47854 1.07819 1.05423 1.72705 1.21455 0.98502 0.85547 0.94700 1.22918 0.86465 0.99125 0.94327 1.87971 1.29563 1.87542 1.25755 1.22632 0.97113 0.98332 0.82923 1.20840 0.91821 0.89991 0.94714 1.42488 1.17281 1.36195 1.42322 1.19676 0.93509 1.10448 1.13839 0.90636 1.25567 1.02551 0.99547 0.99183 1.69840 1.39375 1.25560 1.27178 0.85071 0.79736 0.77550 0.77380 1.19005 1.21972 1.22146 1.21035 0.87751 0.85824 0.74482 1.90587 1.15106 1.87458 1.51153 1.21368 0.97743 0.91327 1.01390 0.88031 1.21836 0.97387 1.04701 0.91880 1.21530 0.97784 0.98072 0.98345 1.21532 0.97553 0.98761 0.97447 1.21724 0.98006 1.02631 0.93534 1.20467 0.94067 0.96838 0.93090 0.89284 1.22384 1.02078 0.94771 0.97737 1.23117 1.00633 1.01854 0.96139 1.22905 0.93475 1.01839 1.03221 0.90971 0.92004 0.89625 0.89670 0.88469 0.92084 0.93863 0.93640 0.91252 0.94060 0.95780 0.79298 0.94094 0.89794 0.88874 0.94400 0.90601 0.90748 0.92272 0.92162 0.91734 0.89723 0.87596 0.89353 0.89649 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.76 8.62 127.77 1.10 2.86 16 2 N -0.61 -14.78 2.84 -846.75 -2.40 -17.18 16 3 C 0.12 3.14 5.81 86.38 0.50 3.65 16 4 C 0.05 1.40 6.28 71.98 0.45 1.85 16 5 O -0.39 -13.41 9.11 -148.98 -1.36 -14.77 16 6 C 0.07 2.23 6.07 71.98 0.44 2.67 16 7 C 0.15 6.20 6.65 86.38 0.57 6.77 16 8 N -0.74 -38.39 5.55 -343.46 -1.91 -40.29 16 9 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 10 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 11 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 12 N -0.97 -59.73 13.06 21.65 0.28 -59.44 16 13 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 16 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 17 C 0.52 12.57 5.10 87.66 0.45 13.02 16 18 O -0.56 -16.53 11.28 -3.04 -0.03 -16.57 16 19 C -0.10 -1.76 1.74 -11.54 -0.02 -1.78 16 20 H 0.10 1.74 7.40 -2.38 -0.02 1.72 16 21 C -0.12 -1.72 5.09 30.59 0.16 -1.56 16 22 C -0.12 -1.89 5.70 30.60 0.17 -1.72 16 23 C -0.12 -1.75 5.92 30.60 0.18 -1.57 16 24 C -0.12 -2.27 4.77 30.58 0.15 -2.13 16 25 C -0.03 -0.46 2.08 -10.81 -0.02 -0.48 16 26 H 0.09 1.26 7.90 -2.39 -0.02 1.24 16 27 C -0.15 -3.09 4.50 -10.80 -0.05 -3.13 16 28 C -0.18 -3.01 10.18 30.62 0.31 -2.69 16 29 C -0.18 -3.12 9.74 30.62 0.30 -2.82 16 30 H 0.07 1.33 6.95 -2.38 -0.02 1.32 16 31 H 0.06 1.78 7.12 -2.39 -0.02 1.76 16 32 H 0.09 1.58 6.01 -2.39 -0.01 1.56 16 33 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 34 H 0.10 2.44 7.42 -2.38 -0.02 2.42 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.38 20.94 7.67 -92.71 -0.71 20.23 16 42 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.08 1.16 4.53 -2.39 -0.01 1.15 16 44 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.04 0.78 7.22 -2.39 -0.02 0.76 16 46 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.06 1.05 7.29 -2.39 -0.02 1.03 16 50 H 0.06 1.63 5.51 -2.39 -0.01 1.61 16 51 H 0.08 2.27 6.10 -2.38 -0.01 2.25 16 52 H 0.11 1.43 8.05 -2.39 -0.02 1.41 16 53 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 54 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 55 H 0.10 1.54 7.61 -2.39 -0.02 1.52 16 Total: -1.00 -68.22 415.15 2.76 -65.46 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: 0.15 Total: 38.47 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 6.00 Total: -3.86 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -4.03 Total: -116.92 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.39 Total: -31.34 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -68.22 2.76 -65.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284875495.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.867 kcal (2) G-P(sol) polarization free energy of solvation -68.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds